mRNA_H-elongata_contig100355.37.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100355.37.1 vs. uniprot
Match: A0A6H5JG58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG58_9PHAE) HSP 1 Score: 218 bits (554), Expect = 1.770e-63 Identity = 117/200 (58.50%), Postives = 134/200 (67.00%), Query Frame = 1 Query: 1 TASHKQWCLINSDGLRPTARSGHSAVVARESLYIFGGCGHPAELPHCSEDGGETAVSEQADDAMPICLGDLHVYDLARQRWSEV-----ACHGGSHVVQPLERTCAAMCASE---EEDRLFLSGGAGDSPHDLRADLLEFDVRNRTWRLLYDGKNEA--AAPTTTAVAHLPKVCPCRRIGHSIVHDSARNRLVIFGGSTG 570 T K W ++NS G PTARSGH A VAR++LY+FGGCGHP S + ++ +A+PICLGDLHVYDLARQRWSEV A S +P ERTCAAMCASE EDRLFLSGGAGD P+DLR EF VR R WRLLY+G + A AAP T + PCRRIGH++VHDS RNRLVIFGGSTG Sbjct: 2 TGKAKHWSVVNSSGC-PTARSGHCATVARDALYVFGGCGHPTAASSAS---AASVDAQLPAEALPICLGDLHVYDLARQRWSEVRPPTRAADSASEEPRPAERTCAAMCASEGEDAEDRLFLSGGAGDDPYDLRGCCWEFCVRRRAWRLLYEGGSAAPSAAPETMS--------PCRRIGHTMVHDSTRNRLVIFGGSTG 189
BLAST of mRNA_H-elongata_contig100355.37.1 vs. uniprot
Match: D8LLR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR4_ECTSI) HSP 1 Score: 127 bits (318), Expect = 6.920e-32 Identity = 79/190 (41.58%), Postives = 92/190 (48.42%), Query Frame = 1 Query: 1 TASHKQWCLINSDGLRPTARSGHSAVVARESLYIFGGCGHPAELPHCSEDGGETAVSEQADDAMPICLGDLHVYDLARQRWSEVACHGGSHVVQPLERTCAAMCASEEEDRLFLSGGAGDSPHDLRADLLEFDVRNRTWRLLYDGKNEAAAPTTTAVAHLPKVCPCRRIGHSIVHDSARNRLVIFGGSTG 570 T K W L+NS G PTARSGH A VAR++LY+FGGCGHPA S + ++ +A+PICLGDLHVYDLARQRWSE GGS +AAP T + PCRRIGH++VHDS RNRLVIFGGSTG Sbjct: 2 TGKAKHWSLVNSSGC-PTARSGHCATVARDALYVFGGCGHPAAA---SSAAAASVDAQLPAEALPICLGDLHVYDLARQRWSE----GGSAA-------------------------------------------------------PSAAPETMS--------PCRRIGHTMVHDSTRNRLVIFGGSTG 120
BLAST of mRNA_H-elongata_contig100355.37.1 vs. uniprot
Match: D7FP90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP90_ECTSI) HSP 1 Score: 102 bits (254), Expect = 2.620e-22 Identity = 61/187 (32.62%), Postives = 87/187 (46.52%), Query Frame = 1 Query: 10 HKQWCLINSDGLRPTARSGHSAVVARESLYIFGGCGHPAELPHCSEDGGETAVSEQADDAMPICLGDLHVYDLARQRWSEVACHGGSHVVQPLERTCAAMCASEEEDRLFLSGGAGDSPHDLRADLLEFDVRNRTWRLLYDGKNEAAAPTTTAVAHLPKVCPCRRIGHSIVHDSARNRLVIFGGSTG 570 H QW +N+ G P+ RSGH VV Y+FGGCG G + ++ CL D++V++L RWS+V G + PL R MCA L ++GG G LRAD++E++V NRTW + E PC+ G S+ + + L++FGGSTG Sbjct: 34 HNQWTKLNTSGDSPSPRSGHDVVVIGHKAYLFGGCG-----------GEQDQIT---------CLNDVYVFNLELHRWSKVTVKGDA----PLPRASFGMCAGPAPGTLIVAGGTGVEMDSLRADVVEYNVPNRTWTQILTDSEET---------------PCKFYGQSVC--TYGDNLLLFGGSTG 179
BLAST of mRNA_H-elongata_contig100355.37.1 vs. uniprot
Match: D7FP81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP81_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 2.380e-16 Identity = 54/191 (28.27%), Postives = 78/191 (40.84%), Query Frame = 1 Query: 1 TASHKQWCLINSDGLRPTARSGHSAVVARESLYIFGGCGHPAELPHCSEDGGETAVSEQADDAMPICLGDLHVYDLARQRWSEVACHGGS-HVVQPLERTCAAMCASEEEDRLFLSGGAGDSPHDLRADLLEFDVRNRTWRLLYDGKNEAAAPTTTAVAHLPKVCPCRRIGHSIVHDSARNRLVIFGGSTG 570 T + +W + + G P+ RSGH V Y+FGGCG D+ CL D++V+DL RW G S H R MC + ++GG G LRAD++E++ R RTW + E PC+ G S+ + + L++FGGSTG Sbjct: 26 TTTMGRWVRLQTSGRPPSPRSGHDVAVIGNKAYLFGGCG--------------------GDEDQITCLNDMYVFDLQLHRWERAVPKGDSIHA-----RASFGMCQGPTPGTVIVAGGTGVEMDSLRADVVEYNTRTRTWTSVLTDSEET---------------PCKFYGQSVC--TYGDNLLLFGGSTG 174
BLAST of mRNA_H-elongata_contig100355.37.1 vs. uniprot
Match: A0A835YYR4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR4_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.510e-12 Identity = 40/141 (28.37%), Postives = 61/141 (43.26%), Query Frame = 1 Query: 10 HKQWCLINSDGLRPTARSGHSAVVARESLYIFGGCGHPAELPHCSEDGGETAVSEQADDAMPICLGDLHVYDLARQRWSEVACHGGSHVVQPLERTCAAMCASEEEDRLFLSGGAGDSPHDLRADLLEFDVRNRTWRLLYD 432 H++W + + G RP ARSG SAV+ R+ +Y+FGGC DG + DLH D WS + GG P R MCA + ++ G+ +D+ +D R+RTW +++ Sbjct: 10 HQEWVHLGTYGDRPCARSGQSAVLVRDKIYVFGGC-----------DG-------------VVVYNDLHCLDTVTHEWSVIHSKGG-----PTPRAAFGMCAGPGAEDFTIACGSNTQYMSAFSDIWSYDTRHRTWTKMFE 121
BLAST of mRNA_H-elongata_contig100355.37.1 vs. uniprot
Match: A0A2D4BH55_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH55_PYTIN) HSP 1 Score: 75.1 bits (183), Expect = 1.720e-12 Identity = 42/142 (29.58%), Postives = 71/142 (50.00%), Query Frame = 1 Query: 10 HKQWCLINSDGLRPTARSGHSAVVARESLYIFGGCGHPAELPHCSEDGGETAVSEQADDAMPICLGDLHVYDLARQRWSEVACHGGSHVVQPLERTCAAMCASEEEDRLFLSGGAGDSPHDLRAD---LLEFDVRNRTWRLL 426 + W +++ G RP RSGHSA+V + +Y+FGG +G C D++ +DL R WS + S+ + P R A CAS ++ +++L GG+G PH + + LL+FD+R ++W ++ Sbjct: 43 YSNWTKLSTSGHRPPVRSGHSALVVGDVMYVFGGY----------NEGN--------------CHNDIYAFDLIRHHWSHIET---SNSISPDGRASHAWCASSDQSKIYLFGGSG--PHWGQTNMGKLLQFDIRRKSWSIV 155
BLAST of mRNA_H-elongata_contig100355.37.1 vs. uniprot
Match: I7MLY8_TETTS (Kelch motif protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MLY8_TETTS) HSP 1 Score: 75.1 bits (183), Expect = 2.140e-12 Identity = 53/184 (28.80%), Postives = 82/184 (44.57%), Query Frame = 1 Query: 19 WCLINSDGLRPTARSGHSAVVAR-ESLYIFGGCGHPAELPHCSEDGGETAVSEQADDAMPICLGDLHVYDLARQRWSEVACHGGSHVVQPLERTCAAMCASEEEDRLFLSGGAGDSPHDLRA-DLLEFDVRNRTWRLLYDGKNEAAAPTTTAVAHLPKVCPCRRIGHSIVHDSARNRLVIFGGS 564 W + ++G P R+GHSA + E +YIFGG E+A L D++ Y++ + W ++ + P R A +CA E +++L GG G ++ A DL EFDV +TWR++ GK PC R GHS+ + N L++FGG+ Sbjct: 11 WIKLQAEGDIPCPRTGHSACSFKNECMYIFGGYS-----------------DEKA-------LNDMYKYNILSKTWEKIEYQNSISEI-PSGRASAQLCAYSEMGKIYLFGGTGMEVNEHSANDLYEFDVNQKTWRIIETGKYS----------------PCERYGHSMTLHN--NFLILFGGA 151
BLAST of mRNA_H-elongata_contig100355.37.1 vs. uniprot
Match: A0A5D6YCU4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCU4_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 5.100e-11 Identity = 39/139 (28.06%), Postives = 69/139 (49.64%), Query Frame = 1 Query: 19 WCLINSDGLRPTARSGHSAVVARESLYIFGGCGHPAELPHCSEDGGETAVSEQADDAMPICLGDLHVYDLARQRWSEVACHGGSHVVQPLERTCAAMCASEEEDRLFLSGGAGDSPHDLRAD---LLEFDVRNRTWRLL 426 W + + G RP RSGHS++V ++ +Y+FGG +G C D++ +DL R W+ + G + P R A CAS ++ +++L GG+G PH + + LL+F++R++ W ++ Sbjct: 43 WTKLTTSGNRPPVRSGHSSLVVKDVMYVFGGY----------NEGN--------------CHNDIYAFDLIRHHWTRIETSNG---ISPDGRASHAWCASTDKTKIYLFGGSG--PHWGQTNMGKLLQFNIRDKNWTIV 152
BLAST of mRNA_H-elongata_contig100355.37.1 vs. uniprot
Match: K3XAG3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAG3_GLOUD) HSP 1 Score: 68.2 bits (165), Expect = 4.390e-10 Identity = 39/139 (28.06%), Postives = 66/139 (47.48%), Query Frame = 1 Query: 19 WCLINSDGLRPTARSGHSAVVARESLYIFGGCGHPAELPHCSEDGGETAVSEQADDAMPICLGDLHVYDLARQRWSEVACHGGSHVVQPLERTCAAMCASEEEDRLFLSGGAGDSPHDLRAD---LLEFDVRNRTWRLL 426 W + + G RP RSGHSA+V + +Y+FGG +G C D++ +DL R W+ + G + P R A CAS ++ +++L GG+G PH + + LL+F++ + W ++ Sbjct: 43 WTKLTTSGNRPPVRSGHSALVVNDVMYVFGGY----------NEGN--------------CHNDIYAFDLIRHHWTRIETSNG---ISPDGRASHAWCASTDKTKIYLFGGSG--PHWGQTNMGKLLQFNILEKNWTIV 152
BLAST of mRNA_H-elongata_contig100355.37.1 vs. uniprot
Match: A0A8K1C5R7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5R7_PYTOL) HSP 1 Score: 62.4 bits (150), Expect = 5.890e-8 Identity = 57/203 (28.08%), Postives = 81/203 (39.90%), Query Frame = 1 Query: 49 PTARSGHSAVVARESLYIFGGCGHPA-------ELPHCS-EDGGETAVSEQA--------------DDAMPICLG--------DLHVYDLARQRWSEVACHGGSHVVQPLERTCAAMCA--SEEEDRLFLSGGAGDSPHDLRADLLEFDVRNRTWRLLYDGKNEAAAPTTTAVAHLPKVCPCRRIGHSIVHDSARNRLVIFGG 561 P R GHSAV+ R+ LY+FGG G +L ED T V+ + DD M +C G DLHV+D W+ V G H+ PL R A CA + ++F+ GG L E + N + D + T V + PC R ++ +D +RL++FGG Sbjct: 153 PAPRGGHSAVLIRKCLYVFGGYGGTGYGRRDFDDLYMLRVEDNSWTKVTSKGRPPEKRAGHQACGVDDLMLVCGGWNSVVQFNDLHVFDTTTSSWTSV---DGPHMASPLPRWNHACCAVLAIPHAKVFIFGGV----------LGEANNYNGQGTYMNDISVLDSGEMTWMVPEIRGTPPCGRADTTLAYDDKGSRLLVFGG 342 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100355.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100355.37.1 >prot_H-elongata_contig100355.37.1 ID=prot_H-elongata_contig100355.37.1|Name=mRNA_H-elongata_contig100355.37.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp TASHKQWCLINSDGLRPTARSGHSAVVARESLYIFGGCGHPAELPHCSEDback to top mRNA from alignment at H-elongata_contig100355:1299..1868- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100355.37.1 ID=mRNA_H-elongata_contig100355.37.1|Name=mRNA_H-elongata_contig100355.37.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=570bp|location=Sequence derived from alignment at H-elongata_contig100355:1299..1868- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100355:1299..1868- >mRNA_H-elongata_contig100355.37.1 ID=mRNA_H-elongata_contig100355.37.1|Name=mRNA_H-elongata_contig100355.37.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig100355:1299..1868- (Himanthalia elongata Himel1 dioecious)back to top |