mRNA_H-elongata_contig100233.29.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100233.29.1 vs. uniprot
Match: A0A6H5KC98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC98_9PHAE) HSP 1 Score: 343 bits (881), Expect = 3.530e-102 Identity = 186/302 (61.59%), Postives = 201/302 (66.56%), Query Frame = 1 Query: 4 YANASHALAKLGVPVALPGGGRGAAPQQLHLQQTVQQLQATQHLATHRA-------------FNGGDRGSLPAATGSRRASTAVSKEAASCLPPCFMCGEDVTHWGMNAGNGEAIKCARDGCDRVFHVTCVAHLLRDAAACTPGGSGAAAGTWECPIHHCARCGVDENGLQLGASARQVPAGDI----HWGGRHG----GNERELGGNR------------SRRLWQCTWCSVAFCLSHLPPQLATAGRKARVADANQCVHCRSPSPRVKLAILLEKMCSRLANHHLAIPFLRPFLPGIASP 810 Y N SHA AKLG+PVALP GGRGAAPQQLHLQQT+QQLQATQ+ + AA PPCF+C +D+THWG NAGNGEAI CARDGC RVFHVTCVA+LL+DAAA TPGG GA AGTWECP+H CA CG DENGLQLG AG + GR G G R+ G SRRLWQCTWCSVAFC+ HLP QLATAGRKARVADANQCVHCRSPSPRVKLAILLE MCSR+ANHHLAIPFLRPF+PGIASP Sbjct: 465 YTNPSHAFAKLGIPVALPEGGRGAAPQQLHLQQTMQQLQATQNFGATATPQQQRHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRXAAELPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEKKDISNAGLVVLAPPLAGRSGVSGVGGWRKSGXXXXXXXXXXXXXAGSRRLWQCTWCSVAFCMKHLPSQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIANHHLAIPFLRPFMPGIASP 766
BLAST of mRNA_H-elongata_contig100233.29.1 vs. uniprot
Match: D8LPU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU7_ECTSI) HSP 1 Score: 304 bits (778), Expect = 2.970e-88 Identity = 150/216 (69.44%), Postives = 163/216 (75.46%), Query Frame = 1 Query: 241 PPCFMCGEDVTHWGMNAGNGEAIKCARDGCDRVFHVTCVAHLLRDAAACTPGGSGAAAGTWECPIHHCARCGVDENGLQLGASARQVPAGDI----HWGGRHG----GNERELGGNR------------SRRLWQCTWCSVAFCLSHLPPQLATAGRKARVADANQCVHCRSPSPRVKLAILLEKMCSRLANHHLAIPFLRPFLPGIASPLKNEED 828 PPCF+C +D+THWG NAGNGEAI CARDGC RVFHVTCVA+LL+DAAA TPGG GA AGTWECP+H CA CG DENGLQLG AG + GR G G R+ G SRRLWQCTWCSVAFC+ HLPPQLATAGRKARVADANQCVHCRSPSPRVKLAILLE MCSR+ANHHLAIPFLRPF+PGIASP ++ D Sbjct: 433 PPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEKKDSSNAGLVVLASPLSGRSGVSGVGGWRKSGXXXXXXXXXXXXXXGSRRLWQCTWCSVAFCMKHLPPQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIANHHLAIPFLRPFMPGIASPFGDDND 648
BLAST of mRNA_H-elongata_contig100233.29.1 vs. uniprot
Match: A0A7S2GUQ6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUQ6_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.750e-11 Identity = 61/230 (26.52%), Postives = 93/230 (40.43%), Query Frame = 1 Query: 247 CFMCGEDVTHWGMNAGNGEAIKCARDGCDRVFHVTCVAHLLRDAAACTPGGS----GAAAGTWECPIHHCARCGVDENGLQLGASARQVPAGDIHWGGRHGGNERELGGNRSRRLWQCTWCSVAFCLSHLPPQL--------------------------------ATAGRKARVADAN----QCVHCRSPSPRVKLAILLEKMCSRLANHHLAIPFLRPFLPG--IASP 810 C +CG GE + C C +VFH CV ++ P G G G W CP H+C C L + +R ++ +L++C+ C++++C H+P +L ++A K R A + +CV+C+ P R LA LLE +R+ANH+LA+PFLRP+L G +ASP Sbjct: 48 CMVCG----------CQGELMLCDYPDCQKVFHKACVWP-----SSLGPAGGLSIDGRTTGEWICPRHYCCIC--------LSSESRD---------------------DQDFQLYKCSDCTISYCEHHVPDELIPGLNKGSGLDNNKATLRNSQTQACSHSHSQCSSAAEKTRAAGRSSEKFKCVYCKEPKARTILARLLESAWARMANHYLALPFLRPYLSGHQMASP 233
BLAST of mRNA_H-elongata_contig100233.29.1 vs. uniprot
Match: A0A7S2SAQ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SAQ8_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.680e-8 Identity = 56/196 (28.57%), Postives = 78/196 (39.80%), Query Frame = 1 Query: 214 VSKEAASCLPP---CFMCGEDVTHWGMNAGNGEAIKCARDGCDRVFHVTCVAHLLRDAAACTPGGSGAAAGTWECPIHHCARCGVDENGLQLGASARQVPAGDIHWGGRHGGNERELGGNRSRRLWQCTWCSVAFCLSHLPPQLATAGRKARVADANQCVHCRSPSPRVKLAILLEKMCSRLANHHLAIPFLRPFL 792 V+K A+ P C +C G G + C GC +VFH C L + P S A W C H CA CG +E+ PA +C C+++FC H + G R + +C C + SPRV LA +L + + +ANH+LA+PFLRP L Sbjct: 230 VNKTASEATPSEESCALC----------CGTGTLLVCDFPGCPKVFHRMCAWPL-----SILPVESPDA--PWFCQRHTCAICGAEED-----------PALPFD---------------------KCETCTISFCAEHRLQGIPEGGALGRPSSRFRCPCCDADSPRVGLAKILFQAWATIANHYLALPFLRPLL 376
BLAST of mRNA_H-elongata_contig100233.29.1 vs. uniprot
Match: A0A397FHH6_9STRA (PHD domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FHH6_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 6.990e-8 Identity = 50/190 (26.32%), Postives = 72/190 (37.89%), Query Frame = 1 Query: 247 CFMCGEDVTHWGMNAGNGEAIKCARDGCDRVFHVTCVAHLLRDAAACTPGGSGAAAGTWECPIHHCARCGVDENGLQLGASARQVPAGDIHWGGRHGGNERELGGNRSRRLWQCTWCSVAFCLSHLP--PQLATAGRKARVADANQCVHCRSPSPRVKLAILLEKMCSRLANHHLAIPFLRPFLPGIASP 810 CF+CG GE + C C +V+H C+ T W CP H C G E +Q ++ +W C C VA + LP P L+ R+ + C HC +PSP+V+LA +LE++ S +A + +PF P L GI P Sbjct: 39 CFLCGL----------GGELVVCEFPRCTKVYHQLCLGAFPFPTDEDTE---------WICPRHSCVLSGRKEPPVQTS----------------------------TKSIWHCLHCPVAVDDTVLPSHPALSKISRREKTMV---CPHCNAPSPKVRLAKILERIWSVIATNRQGMPFCGPLLVGIDRP 178
BLAST of mRNA_H-elongata_contig100233.29.1 vs. uniprot
Match: A0A3L6VEF1_9STRA (PHD-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VEF1_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.330e-7 Identity = 50/190 (26.32%), Postives = 72/190 (37.89%), Query Frame = 1 Query: 247 CFMCGEDVTHWGMNAGNGEAIKCARDGCDRVFHVTCVAHLLRDAAACTPGGSGAAAGTWECPIHHCARCGVDENGLQLGASARQVPAGDIHWGGRHGGNERELGGNRSRRLWQCTWCSVAFCLSHLP--PQLATAGRKARVADANQCVHCRSPSPRVKLAILLEKMCSRLANHHLAIPFLRPFLPGIASP 810 CF+CG GE + C C +V+H C+ T W CP H C G E +Q ++ +W C C VA + LP P L+ R+ + C HC +PSP+V+LA +LE++ S +A + +PF P L GI P Sbjct: 189 CFLCGL----------GGELVVCEFPRCTKVYHQLCLGAFPFPTDEDTE---------WVCPRHSCVLSGRKEPPVQTS----------------------------TKSIWHCLHCPVAVDDTVLPSHPALSKISRREKTMV---CPHCNAPSPKVRLAKILERIWSVIATNRQGMPFCGPLLVGIDRP 328
BLAST of mRNA_H-elongata_contig100233.29.1 vs. uniprot
Match: A0A6G0X3E3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3E3_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.610e-7 Identity = 50/188 (26.60%), Postives = 70/188 (37.23%), Query Frame = 1 Query: 247 CFMCGEDVTHWGMNAGNGEAIKCARDGCDRVFHVTCVAHLLRDAAACTPGGSGAAAGTWECPIHHCARCGVDENGLQLGASARQVPAGDIHWGGRHGGNERELGGNRSRRLWQCTWCSVAFCLSHLPPQLATAGRKARVADANQCVHCRSPSPRVKLAILLEKMCSRLANHHLAIPFLRPFLPGIASP 810 CF+CG GE + C C +V+H C+ T W CP H C G EN + S+ +W C C + S LP A + R ++ C HC +PSPRV+LA LLE++ S +A + +PF P L G+ P Sbjct: 265 CFLCGL----------GGELVVCEFPRCTKVYHQLCLGAYPFPMDEETE---------WICPRHTCVISGRKENPMST---------------------------QTSKTMWHCLNCPIGVETSILPTHSALS-RHSKRDKTIICPHCNAPSPRVRLAKLLERIWSIVATNRQGMPFCGPLLVGVDRP 405
BLAST of mRNA_H-elongata_contig100233.29.1 vs. uniprot
Match: A0A397DEQ7_9STRA (PHD-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DEQ7_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.890e-7 Identity = 53/197 (26.90%), Postives = 75/197 (38.07%), Query Frame = 1 Query: 247 CFMCGEDVTHWGMNAGNGEAIKCARDGCDRVFHVTCVAHLLRDAAACTPGGSGAAAGTWECPIHHCARCGVDENGLQLGASARQVPAGDIHWGGRHGGNERELGGNRSRRLWQCTWCSVAFCLSHLP--PQLATAGRKARVADANQCVHCRSPSPRVKLAILLEKMCSRLANHHLAIPFLRPFLPGIASPLKNEEDP 831 CF+CG GE + C C +V+H C+ T W CP H C G E +Q ++ +W C C VA + LP P L+ R+ + C HC +PSP+V+LA +LE++ S +A + +PF P L GI P E DP Sbjct: 199 CFLCGL----------GGELVVCEFPRCTKVYHQLCLGAFPFPTDEDTE---------WICPRHSCVLSGRKEPPVQTS----------------------------TKSIWHCLHCPVAVDDTVLPSHPALSKISRREKTMV---CPHCNAPSPKVRLAKILERIWSVIATNRQGMPFCGPLLVGIDRPA--EMDP 343
BLAST of mRNA_H-elongata_contig100233.29.1 vs. uniprot
Match: A0A3R7E4K7_9STRA (PHD-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7E4K7_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.020e-7 Identity = 53/197 (26.90%), Postives = 75/197 (38.07%), Query Frame = 1 Query: 247 CFMCGEDVTHWGMNAGNGEAIKCARDGCDRVFHVTCVAHLLRDAAACTPGGSGAAAGTWECPIHHCARCGVDENGLQLGASARQVPAGDIHWGGRHGGNERELGGNRSRRLWQCTWCSVAFCLSHLP--PQLATAGRKARVADANQCVHCRSPSPRVKLAILLEKMCSRLANHHLAIPFLRPFLPGIASPLKNEEDP 831 CF+CG GE + C C +V+H C+ T W CP H C G E +Q ++ +W C C VA + LP P L+ R+ + C HC +PSP+V+LA +LE++ S +A + +PF P L GI P E DP Sbjct: 464 CFLCGL----------GGELVVCEFPRCTKVYHQLCLGAFPFPTDEDTE---------WICPRHSCVLSGRKEPPVQTS----------------------------TKSIWHCLHCPVAVDDTVLPSHPALSKISRREKTMV---CPHCNAPSPKVRLAKILERIWSVIATNRQGMPFCGPLLVGIDRPA--EMDP 608
BLAST of mRNA_H-elongata_contig100233.29.1 vs. uniprot
Match: A0A6A4ZHF3_9STRA (PHD-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZHF3_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.090e-7 Identity = 50/190 (26.32%), Postives = 72/190 (37.89%), Query Frame = 1 Query: 247 CFMCGEDVTHWGMNAGNGEAIKCARDGCDRVFHVTCVAHLLRDAAACTPGGSGAAAGTWECPIHHCARCGVDENGLQLGASARQVPAGDIHWGGRHGGNERELGGNRSRRLWQCTWCSVAFCLSHLP--PQLATAGRKARVADANQCVHCRSPSPRVKLAILLEKMCSRLANHHLAIPFLRPFLPGIASP 810 CF+CG GE + C C +V+H C+ T W CP H C G E +Q ++ +W C C VA + LP P L+ R+ + C HC +PSP+V+LA +LE++ S +A + +PF P L GI P Sbjct: 197 CFLCGL----------GGELVVCEFPRCTKVYHQLCLGAFPFPTDEDTE---------WVCPRHSCVLSGRKEPPVQTS----------------------------TKSIWHCLHCPVAVDDTVLPSHPALSKISRREKTMV---CPHCNAPSPKVRLAKILERIWSVIATNRQGMPFCGPLLVGIDRP 336 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100233.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100233.29.1 >prot_H-elongata_contig100233.29.1 ID=prot_H-elongata_contig100233.29.1|Name=mRNA_H-elongata_contig100233.29.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=449bp PYANASHALAKLGVPVALPGGGRGAAPQQLHLQQTVQQLQATQHLATHRAback to top mRNA from alignment at H-elongata_contig100233:485..2320- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100233.29.1 ID=mRNA_H-elongata_contig100233.29.1|Name=mRNA_H-elongata_contig100233.29.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1836bp|location=Sequence derived from alignment at H-elongata_contig100233:485..2320- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100233:485..2320- >mRNA_H-elongata_contig100233.29.1 ID=mRNA_H-elongata_contig100233.29.1|Name=mRNA_H-elongata_contig100233.29.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2694bp|location=Sequence derived from alignment at H-elongata_contig100233:485..2320- (Himanthalia elongata Himel1 dioecious)back to top |