mRNA_H-elongata_contig100231.28.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: D8LI15_ECTSI (Folate/biopterin transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI15_ECTSI) HSP 1 Score: 231 bits (588), Expect = 2.150e-70 Identity = 112/143 (78.32%), Postives = 126/143 (88.11%), Query Frame = 1 Query: 4 AKRRLDRYMRSEDDLNIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432 +R +DR+ +++LNIY AS+AIVMSYFS+GVALELL TP+AYYLIDDLGAESGVYTVWV+LV LPWSFK YGFLSDCVPIRGLKRKPYMLIGW VHI+SN+ LAIMGTP + VILSF+SACGYLLSDVMTDAIVVEK Sbjct: 106 VQRWIDRHRNRDEELNIYSLASLAIVMSYFSIGVALELLYTPIAYYLIDDLGAESGVYTVWVILVTLPWSFKAAYGFLSDCVPIRGLKRKPYMLIGWGVHILSNSALAIMGTPGEDAVVILSFLSACGYLLSDVMTDAIVVEK 248
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A835YTY0_9STRA (Folate/biopterin transporter n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY0_9STRA) HSP 1 Score: 145 bits (367), Expect = 2.530e-38 Identity = 66/128 (51.56%), Postives = 91/128 (71.09%), Query Frame = 1 Query: 49 NIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432 ++Y S+AI+MSYFSVGV L + PV YLI +LGA S + V+ ++ LPWSFKV +GF+SD PI G++R PY++IGW VHI LA + P+ W + +F++ACGYLLSDVMTD+I+VE+ Sbjct: 104 DLYSLPSLAIIMSYFSVGVVLTFTTVPVTVYLIQELGASSTQFAVYTIVCKLPWSFKVFFGFISDAFPICGMRRLPYLVIGWTVHIACYVTLAFLVQPTVEWVIGAAFVAACGYLLSDVMTDSIMVER 231
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A7S1FNC7_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FNC7_9STRA) HSP 1 Score: 145 bits (365), Expect = 1.590e-37 Identity = 66/128 (51.56%), Postives = 91/128 (71.09%), Query Frame = 1 Query: 49 NIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432 NI ++AI MSYF +GVAL+LL TP+ Y I+DLGA + V ++A+PW FKV+YGFLSDCVPI GL+RKPY + GWV++++ N IL + PS + L F+ GY+L+DVMTDA++VE+ Sbjct: 292 NISSLPNLAIPMSYFCIGVALQLLRTPLIVYFIEDLGATAAEVNVLFTVMAVPWCFKVLYGFLSDCVPISGLRRKPYFMTGWVLYVVCNLILCVAQQPSIQMCIFLVFLQTAGYMLADVMTDALIVER 419
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A1Z5K9Z9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9Z9_FISSO) HSP 1 Score: 138 bits (348), Expect = 2.690e-35 Identity = 66/122 (54.10%), Postives = 87/122 (71.31%), Query Frame = 1 Query: 67 SIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432 ++AI MSYF +GVAL+LL TP+ Y I+DL A V ++A+PW FKV+YGFLSDC+PI GL+RKPY + GWVV I+SN IL I PS ++L F GY+L+DVMTDA++VE+ Sbjct: 214 NLAIPMSYFCIGVALQLLRTPLIVYFIEDLNATPAEVNVLFTVMAVPWCFKVIYGFLSDCLPISGLRRKPYFMTGWVVFIVSNLILMINPIPSIPVCILLVFTQTAGYMLADVMTDALIVER 335
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: D7G1P4_ECTSI (Biopterin transport-related protein BT1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P4_ECTSI) HSP 1 Score: 131 bits (330), Expect = 3.390e-33 Identity = 61/138 (44.20%), Postives = 95/138 (68.84%), Query Frame = 1 Query: 19 DRYMRSEDDLNIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432 D++MR NI+ + A+VMSYF VG A+ L+TP++YY+++ +GA G + + L LPWSFK++YGF+SD PI G++RKPY ++GW+V++++N +A PS + S I + G++LSDV TDAI+VE+ Sbjct: 64 DKWMR-----NIWAVQNRAVVMSYFCVGFAIRFLTTPISYYMVNVIGASPGQQNIMLTLAQLPWSFKLVYGFISDNFPIGGMRRKPYFIMGWLVYVLTNLYVATKEVPSIQLLAVGSLIMSMGFMLSDVTTDAILVER 196
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A6V1WMI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WMI5_HETAK) HSP 1 Score: 130 bits (328), Expect = 5.630e-33 Identity = 61/123 (49.59%), Postives = 86/123 (69.92%), Query Frame = 1 Query: 64 ASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432 A++AI +SYF VG AL LSTP+ YY++ L A +V + +LPWSFK+ YGFLSDCVPIRG++RKPY ++GW ++++ + LA + PS L F+ GY+++DVMTDAIVVE+ Sbjct: 64 ANVAIPLSYFCVGFALNFLSTPLTYYMVHVLDASPAQQSVVRTMQSLPWSFKLAYGFLSDCVPIRGMRRKPYFILGWTIYLLCHLTLAALIQPSIGPLTSLLFLGTVGYMMADVMTDAIVVER 186
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A835Z8G1_9STRA (Biopterin transport-related protein BT1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G1_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.670e-32 Identity = 58/128 (45.31%), Postives = 84/128 (65.62%), Query Frame = 1 Query: 49 NIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432 +I+ + A+ SYF VG+A+ L TPV+YYL+ +LGA V V L LPWSFK++YGF+SD PI G++RKPY + GW ++ + N +LA G P +L + CG+++SDV TDAI+VE+ Sbjct: 3 DIWAAPNRAVPASYFCVGIAMSFLRTPVSYYLVHELGASPSQQNVVVTLAMLPWSFKLVYGFISDNFPIGGMRRKPYFIAGWFIYSMCNLLLAATGRPGVQSVALLQLLGTCGFMMSDVTTDAIIVER 130
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A7S2H0Y7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0Y7_9STRA) HSP 1 Score: 127 bits (319), Expect = 8.550e-32 Identity = 58/133 (43.61%), Postives = 88/133 (66.17%), Query Frame = 1 Query: 31 RSEDDLNIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVE 429 + +D N+Y ++AI MSY++VG+AL LSTPV+YYL+D+L A+S + + + LPW K+ +G LSD P+ G R+P+ +GW + ++SN L IMGTP + ++LSF G LLSD + DA++VE Sbjct: 16 KGQDVTNLYWTGNMAIAMSYWNVGIALSFLSTPVSYYLVDNLEADSAMVNTYSAITYLPWCLKIFFGILSDVYPMFGWHRRPWFFLGWGIFMVSNLALTIMGTPGTSALLLLSFSQTMGLLLSDTVADAMIVE 148
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: W7TKM6_9STRA (Folate biopterin transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKM6_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.320e-30 Identity = 57/129 (44.19%), Postives = 84/129 (65.12%), Query Frame = 1 Query: 46 LNIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432 +++Y + A++MSY+++G A+ TP+ Y ++ L + ++ALPWSFKV+YG LSDCVPI G +RKPY +IGW + N LA +G PS N + + F S CGY+L+DVM DAI+VE+ Sbjct: 129 ISMYSLQNSALLMSYWTIGFAMTFTGTPLTAYAVNKLNVGPAQLNIAGTMLALPWSFKVLYGLLSDCVPIMGKRRKPYFVIGWSAFVAMNLGLASLGEPSLNALIGMGFFSVCGYMLADVMCDAIIVER 257
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Match: A0A7R9U5H3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5H3_9STRA) HSP 1 Score: 117 bits (294), Expect = 5.200e-28 Identity = 51/134 (38.06%), Postives = 91/134 (67.91%), Query Frame = 1 Query: 31 RSEDDLNIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYTVWVVLVALPWSFKVMYGFLSDCVPIRGLKRKPYMLIGWVVHIISNAILAIMGTPSANWTVILSFISACGYLLSDVMTDAIVVEK 432 ++E L+++ +A+ M+YF +GV++ ++TP+ Y++++LGAE +L++LPWSFK+++GF+SD PI G +RKPYM++G + H ++ LA+MGTP L++++ G ++ DVM D +VVE+ Sbjct: 129 KNEAQLDLWSIEGLALPMAYFVIGVSVSFITTPLQVYMVEELGAEPEAQNTISILMSLPWSFKLLFGFVSDVNPILGWRRKPYMILGSMAHAVAYLSLALMGTPGIQVLSFLTWVATMGQIMVDVMADTLVVER 262 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100231.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100231.28.1 >prot_H-elongata_contig100231.28.1 ID=prot_H-elongata_contig100231.28.1|Name=mRNA_H-elongata_contig100231.28.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp MRSEDDLNIYGWASIAIVMSYFSVGVALELLSTPVAYYLIDDLGAESGVYback to top mRNA from alignment at H-elongata_contig100231:587..1756- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100231.28.1 ID=mRNA_H-elongata_contig100231.28.1|Name=mRNA_H-elongata_contig100231.28.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1170bp|location=Sequence derived from alignment at H-elongata_contig100231:587..1756- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100231:587..1756- >mRNA_H-elongata_contig100231.28.1 ID=mRNA_H-elongata_contig100231.28.1|Name=mRNA_H-elongata_contig100231.28.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig100231:587..1756- (Himanthalia elongata Himel1 dioecious)back to top |