mRNA_H-elongata_contig100216.26.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: D8LBK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK7_ECTSI) HSP 1 Score: 133 bits (335), Expect = 1.010e-34 Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1 Query: 1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222 RPL REAPG+VHAIY+GGLK+TPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGS+ PLLPRIVNLL+G+ C Sbjct: 615 RPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSMVPLLPRIVNLLKGNPC 688
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A6H5K7N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N4_9PHAE) HSP 1 Score: 133 bits (335), Expect = 1.250e-34 Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1 Query: 1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222 RPL REAPG+VHAIY+GGLK+TPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGS+ PLLPRIVNLL+G+ C Sbjct: 788 RPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSLVPLLPRIVNLLKGNPC 861
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A835YS15_9STRA (MoeA N-terminal region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS15_9STRA) HSP 1 Score: 120 bits (302), Expect = 2.900e-30 Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 1 Query: 4 PLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222 PL R APGIVHAIY+ GLK+TPLAVLSRPVAGTR NTLVVTLPGSVKAV EN+ ++ PLLPRIVNLLQG++C Sbjct: 550 PLLQRHAPGIVHAIYQAGLKHTPLAVLSRPVAGTRGNTLVVTLPGSVKAVNENMTALVPLLPRIVNLLQGNEC 622
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A812RY17_SYMMI (Gphn protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RY17_SYMMI) HSP 1 Score: 102 bits (254), Expect = 1.650e-26 Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 1 Query: 1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222 RPLF REAP + A+ GLK+TPLAVLSRPV GTRN TL+ TLPGSVKAV+EN+ ++ PLLPRI+NL+ +C Sbjct: 39 RPLFHREAPAVAQALINEGLKHTPLAVLSRPVVGTRNETLICTLPGSVKAVRENIQALKPLLPRIMNLISTGKC 112
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A7S3XZE9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZE9_HETAK) HSP 1 Score: 96.3 bits (238), Expect = 9.790e-24 Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1 Query: 4 PLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222 PL REAPG+V A+ + G ++TPLAVLSRPVAGTR TLV T+PGS KAVKEN+ + PL+PRI NLL QC Sbjct: 78 PLLHREAPGLVFALMKKGTEHTPLAVLSRPVAGTRGRTLVFTVPGSSKAVKENMEVMIPLIPRICNLLSDRQC 150
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A7S2V159_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V159_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.490e-23 Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 1 Query: 1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222 RP+ REAPG+V A+ + G K TPLAVLSRPVAGTR +L+VTLPGS KAVKENL ++ PLLPRIVNLL + C Sbjct: 658 RPILHREAPGLVFALLQEGTKNTPLAVLSRPVAGTREKSLIVTLPGSTKAVKENLVALIPLLPRIVNLLNDNAC 731
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: W7TR83_9STRA (Molybdenum cofactor biosynthesis protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TR83_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.810e-22 Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222 RPL +EAPG+V I E G K+TP AVLSRPVAG R T +VTLPGS KAVKENL ++ PLLP++ LL+ C Sbjct: 26 RPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATC 99
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: I2CRJ2_NANGC (Gephyrin (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRJ2_NANGC) HSP 1 Score: 91.7 bits (226), Expect = 3.350e-21 Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222 RPL +EAPG+V I E G K+TP AVLSRPVAG R T +VTLPGS KAVKENL ++ PLLP++ LL+ C Sbjct: 144 RPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATC 217
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A4D9D018_9STRA (Molybdopterin adenylyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D018_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.300e-20 Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 1 RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSVAPLLPRIVNLLQGHQC 222 RPL +EAPG+V I E G K+TP AVLSRPVAG R T +VTLPGS KAVKENL ++ PLLP++ LL+ C Sbjct: 221 RPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATC 294
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Match: A0A5C3Q6D6_9AGAR (Molybdopterin adenylyltransferase n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3Q6D6_9AGAR) HSP 1 Score: 90.1 bits (222), Expect = 2.320e-19 Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 1 Query: 4 PLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGS--VAPLLPRIVNLLQG 213 PL R+APG+V I E GLK+TPLA LSRPVAGTR NTLVVTLPGSVKAVKENL + V L V+L++G Sbjct: 89 PLLERQAPGLVQLIMEAGLKHTPLAALSRPVAGTRGNTLVVTLPGSVKAVKENLAALLVRGFLEHAVDLVRG 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100216.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100216.26.1 >prot_H-elongata_contig100216.26.1 ID=prot_H-elongata_contig100216.26.1|Name=mRNA_H-elongata_contig100216.26.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp RPLFIREAPGIVHAIYEGGLKYTPLAVLSRPVAGTRNNTLVVTLPGSVKAback to top mRNA from alignment at H-elongata_contig100216:1823..2047- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100216.26.1 ID=mRNA_H-elongata_contig100216.26.1|Name=mRNA_H-elongata_contig100216.26.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig100216:1823..2047- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100216:1823..2047- >mRNA_H-elongata_contig100216.26.1 ID=mRNA_H-elongata_contig100216.26.1|Name=mRNA_H-elongata_contig100216.26.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig100216:1823..2047- (Himanthalia elongata Himel1 dioecious)back to top |