Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1918 |
| Cds size | 1083 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929543.9514568-UTR-H-elongata_contig10015:7068..7422 | 1622929543.9514568-UTR-H-elongata_contig10015:7068..7422 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10015 7069..7422 + |
| 1691679062.3547537-UTR-H-elongata_contig10015:7068..7422 | 1691679062.3547537-UTR-H-elongata_contig10015:7068..7422 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10015 7069..7422 + |
| 1622929543.978374-UTR-H-elongata_contig10015:7699..7810 | 1622929543.978374-UTR-H-elongata_contig10015:7699..7810 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10015 7700..7810 + |
| 1691679062.4310377-UTR-H-elongata_contig10015:7699..7810 | 1691679062.4310377-UTR-H-elongata_contig10015:7699..7810 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10015 7700..7810 + |
| 1622929544.0906715-UTR-H-elongata_contig10015:8893..9263 | 1622929544.0906715-UTR-H-elongata_contig10015:8893..9263 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10015 8894..9263 + |
| 1691679062.4658475-UTR-H-elongata_contig10015:8893..9263 | 1691679062.4658475-UTR-H-elongata_contig10015:8893..9263 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10015 8894..9263 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929544.0784879-CDS-H-elongata_contig10015:7810..8893 | 1622929544.0784879-CDS-H-elongata_contig10015:7810..8893 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10015 7811..8893 + |
| 1691679062.4528341-CDS-H-elongata_contig10015:7810..8893 | 1691679062.4528341-CDS-H-elongata_contig10015:7810..8893 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10015 7811..8893 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10015.17.1 >prot_H-elongata_contig10015.17.1 ID=prot_H-elongata_contig10015.17.1|Name=mRNA_H-elongata_contig10015.17.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=361bp
MIDVTKRKLCATDGCSKQPNYGYAGSTKPEYCAKHALDAMINFKKGKMCA
SDGCCKQPSYGKAGSSKREYCSKHALDGMIHFKKRKMCAGDGCSKQPSYG
EAGSTKPEFCAKHALEGMIDVRKTIKCAGNGCSKQPSYEKAGSKKREYCA
KHSLDGMIYLKKGKMCAGDGCSKHPSYGEAGSTKPEFFAKHAMEGMICVR
KRKMCAGDECSKQPNYGNAGSTKPEYCAKHALEGMIDVQKKICAGDGCSR
KPTYGKAGSKKWEYCAQHALEGMGNVLNTRCAGDGSSKLERYGNAGSKRR
DYPAKNAMGVMVSTFPHNTPSSRKRVSKRSKTDNNVGAPFSDNALDVGLG
KSEVSVTKSK* back to topmRNA from alignment at H-elongata_contig10015:7069..9263+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig10015.17.1 ID=mRNA_H-elongata_contig10015.17.1|Name=mRNA_H-elongata_contig10015.17.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2195bp|location=Sequence derived from alignment at H-elongata_contig10015:7069..9263+ (Himanthalia elongata Himel1 dioecious)
CTTCGGGGTTGCCGGCAGCTCGAACCGGGATCACTGCGCGAATCATGCGC
TAAAGGGTATGGCTAACGTTAAGAATGAAATATATGCTGACTATGGATGC
TCGAACGGATCGAGCTACGGGAAGACCGGAAGCTCAAAATCCCAGTACCG
CGCCGAGCATGCTGTGGAAGGGATGGTCAACGTTGGTTCCAATGCATGTG
CTGCTGATGGATGTTATAGAATTGCGAGCGACGTAAACGTCGGAAGCACG
AAGCGAGAGTACTGCGGTAAGCATTCCTTGGAGGATATGGTCAATGTTAC
TAAACAGTGTACCATTGATGGATGTTCTAAGCAATCAAACTACGGAAATT
CTAGAAGTACCAAACAGGAGTACTGCGCTAAGCATGCCTTGATTGGGATA
ATTTACGTTCAGAAAAAAAAATGTGCTGGTAATGGATGTTGTAAGGAACC
AATCTACGGAAAGGCTGGCACCAAGAAACAGGAGTACTGCGCTAAGCATG
CATTGGATGGGATGATTAACTTTAAGAAGGAAATATGTGCTGGTGATGGA
TGTTCTAAGCAACCAAGCTACGGAAAGGTTGGCAGCAATAAACGGGAGTA
CTGCCCTAAGCATGCCTTAGAGGGGATGATTCACGTAAAGAAGAGGAAAA
TATGTGACGGTGATGGATGTTCCAAGCGACCACACTACGTAAAGGCTGGC
AGCACGAAACCGGAGTACTGTGCTAAGCATGCATTGGAGGGGATGATTGA
CGTAACCAAGAGGAAACTGTGTGCCACTGATGGATGCTCTAAGCAACCAA
ACTATGGATATGCTGGCAGCACGAAACCGGAGTACTGCGCTAAGCATGCC
TTGGATGCGATGATTAACTTTAAGAAGGGGAAAATGTGTGCCAGTGATGG
ATGTTGTAAGCAACCAAGCTACGGAAAGGCTGGCAGCTCGAAACGGGAGT
ACTGCTCTAAGCATGCATTAGATGGGATGATTCACTTTAAGAAGAGAAAA
ATGTGTGCCGGTGATGGATGCTCTAAGCAACCAAGCTATGGAGAAGCCGG
AAGCACGAAACCGGAATTTTGCGCGAAGCATGCCTTGGAGGGGATGATTG
ACGTTAGGAAGACGATAAAATGTGCCGGTAATGGATGTTCTAAGCAACCA
AGCTATGAAAAGGCTGGCAGCAAGAAACGGGAGTACTGCGCTAAGCATTC
ATTAGATGGGATGATTTACTTGAAGAAGGGGAAAATGTGTGCCGGTGATG
GATGCTCTAAGCATCCAAGCTACGGAGAAGCCGGAAGCACGAAACCGGAG
TTTTTCGCGAAGCATGCCATGGAGGGGATGATTTGCGTTAGGAAGAGGAA
GATGTGTGCCGGTGATGAATGTTCTAAGCAACCAAACTATGGAAATGCTG
GCAGCACGAAACCGGAGTACTGCGCTAAGCATGCCTTGGAGGGAATGATT
GACGTTCAAAAGAAAATATGTGCCGGTGATGGATGTTCTAGGAAACCAAC
CTACGGAAAGGCTGGCAGCAAGAAATGGGAGTACTGTGCTCAGCATGCCT
TGGAGGGAATGGGCAATGTTTTGAACACCAGGTGTGCCGGTGATGGAAGT
TCTAAGCTAGAGAGATACGGAAATGCCGGGAGCAAGAGGCGGGATTACCC
CGCAAAAAATGCTATGGGTGTCATGGTGTCCACCTTCCCTCACAATACTC
CAAGTTCGAGGAAGCGGGTGTCGAAAAGATCTAAAACCGATAATAACGTT
GGAGCCCCCTTTTCCGATAATGCATTAGATGTTGGTTTGGGGAAGTCAGA
GGTATCAGTGACTAAATCCAAGTAGGGGTGTTTTGCAAAGGAGTGAGTTG
ACGGTGTACTGGCGAACGGGAGCGGTGGTATTGCGCTCCGTTTTTTTTGT
TGTTGTAAGATATTCTTCTTTGGTATTTGTTTGGCTGACTACAGGCAGGA
GGTAAAAAAATCCGGTTGTTCATTACACATATTTGGAGCCCGAACAATTT
TATTCTTGTTATTGGTCGAACGAGAAGGACGTCGATAAAATTTTTAAAGC
ATTGCAACGAGCATCGAACATATAGGTAGTAGCTGGGTTGATTCAAGTCG
AGATAAATGATCCACAAATAATGCCAAATCCACAGTATTGAGGGGCCGAA
CACGTTCGATGTAACTTATGATCAACTTGGTCTCTTGAATACATA back to topCoding sequence (CDS) from alignment at H-elongata_contig10015:7069..9263+ >mRNA_H-elongata_contig10015.17.1 ID=mRNA_H-elongata_contig10015.17.1|Name=mRNA_H-elongata_contig10015.17.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2166bp|location=Sequence derived from alignment at H-elongata_contig10015:7069..9263+ (Himanthalia elongata Himel1 dioecious)
ATGATTGACGTAACCAAGAGGAAACTGTGTGCCACTGATGGATGCTCTAA
GCAACCAAACTATGGATATGCTGGCAGCACGAAACCGGAGTACTGCGCTA
AGCATGCCTTGGATGCGATGATTAACTTTAAGAAGGGGAAAATGTGTGCC
AGTGATGGATGTTGTAAGCAACCAAGCTACGGAAAGGCTGGCAGCTCGAA
ACGGGAGTACTGCTCTAAGCATGCATTAGATGGGATGATTCACTTTAAGA
AGAGAAAAATGTGTGCCGGTGATGGATGCTCTAAGCAACCAAGCTATGGA
GAAGCCGGAAGCACGAAACCGGAATTTTGCGCGAAGCATGCCTTGGAGGG
GATGATTGACGTTAGGAAGACGATAAAATGTGCCGGTAATGGATGTTCTA
AGCAACCAAGCTATGAAAAGGCTGGCAGCAAGAAACGGGAGTACTGCGCT
AAGCATTCATTAGATGGGATGATTTACTTGAAGAAGGGGAAAATGTGTGC
CGGTGATGGATGCTCTAAGCATCCAAGCTACGGAGAAGCCGGAAGCACGA
AACCGGAGTTTTTCGCGAAGCATGCCATGGAGGGGATGATTTGCGTTAGG
AAGAGGAAGATGTGTGCCGGTGATGAATGTTCTAAGCAACCAAACTATGG
AAATGCTGGCAGCACGAAACCGGAGTACTGCGCTAAGCATGCCTTGGAGG
GAATGATTGACGTTCAAAAGAAAATATGTGCCGGTGATGGATGTTCTAGG
AAACCAACCTACGGAAAGGCTGGCAGCAAGAAATGGGAGTACTGTGCTCA
GCATGCCTTGGAGGGAATGGGCAATGTTTTGAACACCAGGTGTGCCGGTG
ATGGAAGTTCTAAGCTAGAGAGATACGGAAATGCCGGGAGCAAGAGGCGG
GATTACCCCGCAAAAAATGCTATGGGTGTCATGGTGTCCACCTTCCCTCA
CAATACTCCAAGTTCGAGGAAGCGGGTGTCGAAAAGATCTAAAACCGATA
ATAACGTTGGAGCCCCCTTTTCCGATAATGCATTAGATGTTGGTTTGGGG
AAGTCAGAGGTATCAGTGACTAAATCCAAGTAGATGATTGACGTAACCAA
GAGGAAACTGTGTGCCACTGATGGATGCTCTAAGCAACCAAACTATGGAT
ATGCTGGCAGCACGAAACCGGAGTACTGCGCTAAGCATGCCTTGGATGCG
ATGATTAACTTTAAGAAGGGGAAAATGTGTGCCAGTGATGGATGTTGTAA
GCAACCAAGCTACGGAAAGGCTGGCAGCTCGAAACGGGAGTACTGCTCTA
AGCATGCATTAGATGGGATGATTCACTTTAAGAAGAGAAAAATGTGTGCC
GGTGATGGATGCTCTAAGCAACCAAGCTATGGAGAAGCCGGAAGCACGAA
ACCGGAATTTTGCGCGAAGCATGCCTTGGAGGGGATGATTGACGTTAGGA
AGACGATAAAATGTGCCGGTAATGGATGTTCTAAGCAACCAAGCTATGAA
AAGGCTGGCAGCAAGAAACGGGAGTACTGCGCTAAGCATTCATTAGATGG
GATGATTTACTTGAAGAAGGGGAAAATGTGTGCCGGTGATGGATGCTCTA
AGCATCCAAGCTACGGAGAAGCCGGAAGCACGAAACCGGAGTTTTTCGCG
AAGCATGCCATGGAGGGGATGATTTGCGTTAGGAAGAGGAAGATGTGTGC
CGGTGATGAATGTTCTAAGCAACCAAACTATGGAAATGCTGGCAGCACGA
AACCGGAGTACTGCGCTAAGCATGCCTTGGAGGGAATGATTGACGTTCAA
AAGAAAATATGTGCCGGTGATGGATGTTCTAGGAAACCAACCTACGGAAA
GGCTGGCAGCAAGAAATGGGAGTACTGTGCTCAGCATGCCTTGGAGGGAA
TGGGCAATGTTTTGAACACCAGGTGTGCCGGTGATGGAAGTTCTAAGCTA
GAGAGATACGGAAATGCCGGGAGCAAGAGGCGGGATTACCCCGCAAAAAA
TGCTATGGGTGTCATGGTGTCCACCTTCCCTCACAATACTCCAAGTTCGA
GGAAGCGGGTGTCGAAAAGATCTAAAACCGATAATAACGTTGGAGCCCCC
TTTTCCGATAATGCATTAGATGTTGGTTTGGGGAAGTCAGAGGTATCAGT
GACTAAATCCAAGTAG back to top
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