mRNA_H-elongata_contig100144.16.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: UPI001E672EAC (RNA-binding protein cabeza-like isoform X7 n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E672EAC) HSP 1 Score: 69.7 bits (169), Expect = 6.440e-12 Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1 Query: 139 GGWADSYARSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315 GGW D Y+ R S R+ KPGDWDCPSCQF NFASR C++C+ P+ D++ G R Sbjct: 64 GGW-DRYSDQDRYSSRSSSKPGDWDCPSCQFSNFASRTACFKCR--TPKDGDSFGSGGR 119
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A0P4WHM5_SCYOL (Uncharacterized protein n=2 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4WHM5_SCYOL) HSP 1 Score: 65.9 bits (159), Expect = 9.190e-11 Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 142 GWADSYA-----RSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315 GW D Y+ R S R+ KPGDWDCPSCQF NFASR C++C+ P+ D++ G R Sbjct: 18 GWGDRYSDHDSGSRDRYSSRSNVKPGDWDCPSCQFSNFASRTACFKCR--TPKDGDSFGSGGR 78
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A0P4WEJ4_SCYOL (Uncharacterized protein n=2 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4WEJ4_SCYOL) HSP 1 Score: 65.9 bits (159), Expect = 1.970e-10 Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 142 GWADSYA-----RSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315 GW D Y+ R S R+ KPGDWDCPSCQF NFASR C++C+ P+ D++ G R Sbjct: 18 GWGDRYSDHDSGSRDRYSSRSNVKPGDWDCPSCQFSNFASRTACFKCR--TPKDGDSFGSGGR 78
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A5B7FD34_PORTR (Zinc finger protein VAR3, chloroplastic n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7FD34_PORTR) HSP 1 Score: 65.9 bits (159), Expect = 2.550e-10 Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 142 GWADSYA-----RSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315 GW D Y+ R S R+ KPGDWDCPSCQF NFASR C++C+ P+ D++ G R Sbjct: 18 GWGDRYSDHDSGSRDRYSSRSNVKPGDWDCPSCQFSNFASRTACFKCR--TPKDGDSFGSGGR 78
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: UPI001C48D0E0 (RNA-binding protein cabeza-like isoform X6 n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C48D0E0) HSP 1 Score: 65.1 bits (157), Expect = 3.990e-10 Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1 Query: 139 GGW----ADSYARSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315 GGW DS +R R S R+ KPGDWDCPSCQF NFASR C++C+ P+ D++ G R Sbjct: 58 GGWDRYSEDSGSRD-RYSSRSSSKPGDWDCPSCQFSNFASRTACFKCR--TPKDGDSFGSGGR 117
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: UPI001E1CCFA7 (E3 SUMO-protein ligase RanBP2-like isoform X1 n=4 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CCFA7) HSP 1 Score: 65.9 bits (159), Expect = 5.830e-10 Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 142 GWADSYA-----RSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315 GW D Y+ R S R+ KPGDWDCPSCQF NFASR C++C+ P+ D++ G R Sbjct: 139 GWGDRYSDHDSGSRDRYSSRSNVKPGDWDCPSCQFSNFASRTACFKCR--TPKDGDSFGSGGR 199
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A8J5CL53_CHIOP (Tyrosine--tRNA ligase n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J5CL53_CHIOP) HSP 1 Score: 65.1 bits (157), Expect = 1.450e-9 Identity = 37/95 (38.95%), Postives = 44/95 (46.32%), Query Frame = 1 Query: 4 CSLHVFAFRQACPRCNTAKDNDRTDLEGEGGGGWEGHGTSQPGATGGWADSYARSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRG 288 C FA R AC +C T KD D G+G S G+ G +RN PGDW CP CQFHNF+SR +CY+C R G Sbjct: 552 CQFSNFASRTACFKCRTPKDGD------------SGNGDSGFGS--GXRXXXXXXXXXXMRNM-LPGDWICPKCQFHNFSSRGMCYKCNSPRAEG 631
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A8H7Q4G1_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q4G1_9FUNG) HSP 1 Score: 64.3 bits (155), Expect = 2.680e-9 Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 Query: 184 RNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRP 282 R H+PGDWDCP+C FHNFASRH C++C + P Sbjct: 419 RTSHRPGDWDCPNCYFHNFASRHHCFKCNAENP 451
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A3R7PJD3_PENVA (tRNA-guanine transglycosylase n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7PJD3_PENVA) HSP 1 Score: 60.8 bits (146), Expect = 4.780e-9 Identity = 34/89 (38.20%), Postives = 48/89 (53.93%), Query Frame = 1 Query: 58 KDNDRTDLEGEG---GGGWEGHGTSQPGATGGWADSYARSPRASVRNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRPRGVDAYAIGER 315 +D+ R D GE GGW+ + G D Y+ + RN KPGDWDCPSC+F N+ASR C +C+ P+ +D++ G R Sbjct: 2 EDSGRDDWGGESEQDAGGWDRYSDKDSGR-----DRYS----SGGRNSRKPGDWDCPSCKFINYASRTACLKCR--IPKDMDSFGSGGR 79
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Match: A0A8H7PJ54_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PJ54_MORIS) HSP 1 Score: 63.2 bits (152), Expect = 6.800e-9 Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 Query: 184 RNQHKPGDWDCPSCQFHNFASRHVCYRCKGDRP 282 R QH+PGDWDCP+C FHNFASR C++C + P Sbjct: 418 RTQHRPGDWDCPNCSFHNFASRKHCFKCNAENP 450 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100144.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100144.16.1 >prot_H-elongata_contig100144.16.1 ID=prot_H-elongata_contig100144.16.1|Name=mRNA_H-elongata_contig100144.16.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp VCSLHVFAFRQACPRCNTAKDNDRTDLEGEGGGGWEGHGTSQPGATGGWAback to top mRNA from alignment at H-elongata_contig100144:324..740- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100144.16.1 ID=mRNA_H-elongata_contig100144.16.1|Name=mRNA_H-elongata_contig100144.16.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig100144:324..740- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100144:324..740- >mRNA_H-elongata_contig100144.16.1 ID=mRNA_H-elongata_contig100144.16.1|Name=mRNA_H-elongata_contig100144.16.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig100144:324..740- (Himanthalia elongata Himel1 dioecious)back to top |