mRNA_H-elongata_contig100109.15.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100109.15.1 vs. uniprot
Match: A0A6H5KLV6_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV6_9PHAE) HSP 1 Score: 285 bits (729), Expect = 1.440e-85 Identity = 179/386 (46.37%), Postives = 211/386 (54.66%), Query Frame = 1 Query: 16 SSLSAELLMPLEHFHGPTFHALLNEYRATNGRGVEKEAEAGGEGGLGAEDDGG-------------------------------ELTNCASADVTGTSTISRTGDIGSGXXXXXXXXXXSTPSLPIDAYREEILAHVRNNRVTVIHGETGSGKSSRLPIMLIEDALE-------------RGGS-----------------------------------------------GG--------PKPRMFVSQPRRAATRALADRVRGDSQRLGVKFGVAMRLGHGVREGPPKAEVTFATTGYIVRLIANSPGLLDSHTHLIIDEVHERSVDTDLLCFFAKRLLHTHPTLRLIVMSATMSARLVNNYYGMADPPLFVGAKRFPIRSVRV 876 SS SAE +MP +HFHGPTFHALLNEYR N + N AD G T + D S + LPIDAYREEIL HVRNNRVTVIHGETGSGKS+R+P+ML+E+AL+ R G+ GG +PRMFVSQPRRAATRAL +RVR +++R G + V +RLGHGVREGPPKAEVTFATTGY+ RL+A++PG+LDSHTHLIIDEVHERSVDTDLLC FAKRL+ THPTLRLIVMSAT+SA L++ YYG+ PPLFVG++RFP+R V V Sbjct: 526 SSCSAEFIMPRDHFHGPTFHALLNEYREENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDRGNTGGADAAGGMT--QPNDASS------PPVVDAAVPLPIDAYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDLIAEEAAAVAEAVREGAXXXXXXXXXXXXXXXXXXKNXXXXXXEAGVXXXXXXXXXXXXAESPAGGIAAAAPQVKRPRMFVSQPRRAATRALVERVRQEAERSGRGWSVGLRLGHGVREGPPKAEVTFATTGYLARLLASNPGVLDSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVRQVYV 903
BLAST of mRNA_H-elongata_contig100109.15.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI) HSP 1 Score: 272 bits (696), Expect = 1.640e-79 Identity = 148/265 (55.85%), Postives = 173/265 (65.28%), Query Frame = 1 Query: 292 LPIDAYREEILAHVRNNRVTVIHGETGSGKSSRLPIMLIEDALE-------------------------------------RGGSGG---------------------------------PKPRMFVSQPRRAATRALADRVRGDSQRLGVKFGVAMRLGHGVREGPPKAEVTFATTGYIVRLIANSPGLLDSHTHLIIDEVHERSVDTDLLCFFAKRLLHTHPTLRLIVMSATMSARLVNNYYGMADPPLFVGAKRFPIRSVRV 876 LPIDAYREEIL HVRNNRVTVIHGETGSGKS+R+P+ML+E+AL+ GSGG +PRMFVSQPRRAATRAL RVR +++R G + V +RLGHGVREGPPKAEVTFATTGY+ RL+A++PG+LDSHTHLIIDEVHERSVDTDLLC FAKRL+ THPTLRLIVMSAT+SA L++ YYG+ PLFVG++RFP+R V V Sbjct: 791 LPIDAYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDLIAEEAAAVAEXXXXXXXXXXXXXXXXXXXXXXXXSGTTGSGGGEEVGVQAGGEGXXXXXXXXXXXXXXXAAAPQVKRPRMFVSQPRRAATRALVQRVRQEAERSGRGWSVGLRLGHGVREGPPKAEVTFATTGYLARLLASNPGVLDSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSSPLFVGSRRFPVRQVYV 1055
BLAST of mRNA_H-elongata_contig100109.15.1 vs. uniprot
Match: K0RU78_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RU78_THAOC) HSP 1 Score: 214 bits (545), Expect = 2.720e-59 Identity = 107/193 (55.44%), Postives = 138/193 (71.50%), Query Frame = 1 Query: 292 LPIDAYREEILAHVRNNRVTVIHGETGSGKSSRLPIMLIEDALERGGSGGPKPRMFVSQPRRAATRALADRVRGDSQRLGVKFGVAMRLGHGVREGPPK-AEVTFATTGYIVRLIANSPGLLDSHTHLIIDEVHERSVDTDLLCFFAKRLLHTHPTLRLIVMSATMSARLVNNYYGMADPPLFVGAKRFPIRS 867 LPID + EIL VR R+T+IHGETG GKSSR+P ML+ + + P+ +M VSQPRR A +ALA+RVR L K G +R+GHG+RE K F TTGY+VRL+AN PG D+H+HLIIDEVHERSVDTD+LC +RLL++HPT+RL++MSATM+A L Y+G+ PP+ VGA+RFPI+ Sbjct: 662 LPIDEHEGEILRAVRTQRITIIHGETGCGKSSRVPCMLLRASPPEPTATAPEVKMIVSQPRRIAAKALAERVRSCEPDLADKIG--LRMGHGIREYETKDTRAWFVTTGYVVRLLANHPGWFDTHSHLIIDEVHERSVDTDILCLLCRRLLNSHPTIRLVLMSATMAAELYQQYFGVPQPPIHVGARRFPIKE 852
BLAST of mRNA_H-elongata_contig100109.15.1 vs. uniprot
Match: A0A7S4MMP8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MMP8_9STRA) HSP 1 Score: 209 bits (533), Expect = 1.090e-57 Identity = 107/193 (55.44%), Postives = 136/193 (70.47%), Query Frame = 1 Query: 292 LPIDAYREEILAHVRNNRVTVIHGETGSGKSSRLPIMLIEDALERGGSGGPKPRMFVSQPRRAATRALADRVRGDSQRLGVKFGVAMRLGHGVREGP-PKAEVTFATTGYIVRLIANSPGLLDSHTHLIIDEVHERSVDTDLLCFFAKRLLHTHPTLRLIVMSATMSARLVNNYYGMADPPLFVGAKRFPIRS 867 LPID + EEIL + RVT+I GETG GKSSR+P+ML+ S +MF+SQPRR A ++LA+RVR L + +A+R+GHGVRE P F TTGY+VRL+AN P SHTHLIIDEVHERSVDTD+LC +RLL THPT+RL++MSATM+A L +Y+G +PP+FVGA+RFPI+ Sbjct: 669 LPIDEHEEEILRTIAEQRVTIIQGETGCGKSSRVPVMLLRAPPPEPTSNARSVKMFISQPRRIAAKSLAERVRQCEPDL--RDCIALRMGHGVREYECPSTRAWFVTTGYLVRLLANHPKSFTSHTHLIIDEVHERSVDTDILCLLCRRLLTTHPTIRLVLMSATMAAALYRSYFGTPEPPIFVGARRFPIKE 859
BLAST of mRNA_H-elongata_contig100109.15.1 vs. uniprot
Match: A0A7S2L2B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L2B3_9STRA) HSP 1 Score: 200 bits (508), Expect = 1.320e-54 Identity = 103/193 (53.37%), Postives = 134/193 (69.43%), Query Frame = 1 Query: 292 LPIDAYREEILAHVRNNRVTVIHGETGSGKSSRLPIMLIEDALERGGSGGPKPRMFVSQPRRAATRALADRVRGDSQRLGVKFGVAMRLGHGVRE-GPPKAEVTFATTGYIVRLIANSPGLLDSHTHLIIDEVHERSVDTDLLCFFAKRLLHTHPTLRLIVMSATMSARLVNNYYGMADPPLFVGAKRFPIRS 867 LPID + EIL ++ RVT+IHGETG GKSSR+P L+ + P+ +M VSQPRR A +ALA+RVR L K +A+R+GHG++E K F TTGY+VRL+AN P DSHTHLIIDEVHERSVD+D+LC +RLLH+HPT+RL++MSAT++A L + Y+G A P+ VG +RFPI Sbjct: 318 LPIDKHEREILNTIKTQRVTIIHGETGCGKSSRVPCFLLRAEPPQPSLAAPEVKMIVSQPRRIAAKALAERVRKVEPDLAHK--IALRMGHGMKEFETQKTRAWFVTTGYVVRLLANHPHWFDSHTHLIIDEVHERSVDSDILCLLCRRLLHSHPTIRLVLMSATLAADLYSQYFG-APQPIHVGVRRFPINE 507
BLAST of mRNA_H-elongata_contig100109.15.1 vs. uniprot
Match: A0A7S3JYC1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYC1_9STRA) HSP 1 Score: 200 bits (508), Expect = 2.220e-54 Identity = 103/188 (54.79%), Postives = 135/188 (71.81%), Query Frame = 1 Query: 292 LPIDAYREEILAHVRNNRVTVIHGETGSGKSSRLPIMLIEDALERGGSGGPKPRMFVSQPRRAATRALADRVRGDSQRLGVKFGVAMRLGHGVREGPPKAEVTFATTGYIVRLIANSPGLLDSHTHLIIDEVHERSVDTDLLCFFAKRLLHTHPTLRLIVMSATMSARLVNNYYGMADPPLFVGAKRF 855 LPIDA++++IL HV NRVT+I GETGSGKSSRLP+ML+ + K RMFVSQPRR A ++L +RVR + + +RLGHG R+ + V F TTGY+VRLIA+SP +L HTHLIIDEVHERSVD +++C A+RL+H+HP LRLIVMSAT+ L+ +Y+ +P +FVGA+RF Sbjct: 510 LPIDAHQDKILEHVARNRVTIIIGETGSGKSSRLPVMLL--------NANKKNRMFVSQPRRIAAKSLCERVRSQ---VSNGHEIGLRLGHGERDEYKETRVWFCTTGYLVRLIASSPQVLRRHTHLIIDEVHERSVDAEVICLLARRLIHSHPNLRLIVMSATLCTELLADYFCTVEPHVFVGARRF 686
BLAST of mRNA_H-elongata_contig100109.15.1 vs. uniprot
Match: A0A7S2SUV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUV2_9STRA) HSP 1 Score: 182 bits (463), Expect = 5.240e-53 Identity = 99/192 (51.56%), Postives = 129/192 (67.19%), Query Frame = 1 Query: 292 LPIDAYREEILAHVRNNRVTVIHGETGSGKSSRLPIMLI-------EDALERGGSGGPKP-RMFVSQPRRAATRALADRVRGDSQRLGVKFGVAMRLGHGVREGPPKAEVTFATTGYIVRLIANSPGLLDSHTHLIIDEVHERSVDTDLLCFFAKRLLHTHPTLRLIVMSATMSARLVNNYYGMADPPLFVG 843 LPI + + I HV ++R+T+IHGETG GKSS +P+ML+ ED RG KP +MFV+QPRR A R+L RVR S+ + V +RLGHG R+ + V FAT GY+ L+A+ HTHLIIDEVHERS+DTD+LC A+RLL +HPTLRLI+MSAT++A L Y+G+ +PPLFVG Sbjct: 70 LPIHDHEDTICNHVADHRITIIHGETGCGKSSTVPLMLLRHHDARREDKAFRGDPMYKKPAKMFVTQPRRIAARSLCQRVRQVSKEPDL---VGLRLGHGERDEKSQTRVWFATVGYVALLLAHHQEKFRDHTHLIIDEVHERSIDTDILCLLARRLLASHPTLRLILMSATIAAELHRQYFGVPEPPLFVG 258
BLAST of mRNA_H-elongata_contig100109.15.1 vs. uniprot
Match: A0A7S4RFM2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RFM2_9STRA) HSP 1 Score: 188 bits (478), Expect = 9.730e-51 Identity = 102/203 (50.25%), Postives = 138/203 (67.98%), Query Frame = 1 Query: 283 TPSL---PIDAYREEILAHVRNNRVTVIHGETGSGKSSRLPIMLIEDALERGGSGGPKP-----RMFVSQPRRAATRALADRVRGDSQRLGVKFGVAMRLGHGVREGPPKAEVTFATTGYIVRLIANSPGLLDSHTHLIIDEVHERSVDTDLLCFFAKRLLHTHPTLRLIVMSATMSARLVNNYYGMADPPLFVGAKRFPIRS 867 TPSL PIDA+++ IL V+NNRVT+I GETG GKSS++PIML+E + P P RMF+ QPRR A ++L +R++ + FG +R+GHGVRE V FATTGY+VRL+AN P D THL+IDEVHERSV+TD+LC A+RLL + +RLI+MSAT++A + +Y+ + + PLFVG + FPI+ Sbjct: 602 TPSLNELPIDAHKDVILTSVQNNRVTIIQGETGCGKSSKVPIMLLE-------TPPPDPTFKEVRMFICQPRRIAAKSLTERIKSTHPQYKHLFG--LRMGHGVREETKDTRVWFATTGYLVRLLANYPERFDDCTHLVIDEVHERSVETDVLCLLARRLLERNKRIRLILMSATVAAGMYRDYFQVKESPLFVGVRCFPIQE 795
BLAST of mRNA_H-elongata_contig100109.15.1 vs. uniprot
Match: A0A3P3YNW4_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YNW4_PLABS) HSP 1 Score: 186 bits (473), Expect = 1.150e-49 Identity = 100/191 (52.36%), Postives = 133/191 (69.63%), Query Frame = 1 Query: 292 LPIDAYREEILAHVRNNRVTVIHGETGSGKSSRLPIMLIEDALERGGSGGPKPRMFVSQPRRAATRALADRVRGDSQRLGVKFGVAMRLGHGVREGPPKAEVTFATTGYIVRLIANSPGLLDSHTHLIIDEVHERSVDTDLLCFFAKRLLHTHPTLRLIVMSATMSARLVNNYYGMADPP-LFVGAKRFPI 861 LPIDA+R+ I+ H+ +RVTVI GETG GKSSR+P M+++ + R G PRM VSQPRR A RAL +R+R + R G +G +R+GHG R P+ + F T+GY+V+ +++ P HTHLIIDEVHERSVD+DLLC A+RLL H LRLIVMSAT+ ++L Y+ + D LFVGA+RFP+ Sbjct: 579 LPIDAHRDRIIDHIDRHRVTVIQGETGCGKSSRIPSMILDAEVRR----GRLPRMMVSQPRRIAARALTERLR--TSRHGPVYG--LRMGHGERSETPQTRIWFVTSGYLVQYMSHHPDAFAQHTHLIIDEVHERSVDSDLLCMLARRLLTQHEHLRLIVMSATIQSKLYCAYFRVPDDQTLFVGARRFPV 761
BLAST of mRNA_H-elongata_contig100109.15.1 vs. uniprot
Match: A0A1E7ENH0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ENH0_9STRA) HSP 1 Score: 185 bits (470), Expect = 2.860e-49 Identity = 96/191 (50.26%), Postives = 133/191 (69.63%), Query Frame = 1 Query: 292 LPIDAYREEILAHVRNNRVTVIHGETGSGKSSRLPIMLIEDALERGGSGGPKPRMFVSQPRRAATRALADRVRGDSQRLGVKFGVAMRLGHGVREGPPK-AEVTFATTGYIVRLIANSPGLLDSHTHLIIDEVHERSVDTDLLCFFAKRLLHTHPTLRLIVMSATMSARLVNNYYGMADPPLFVGAKRFPI 861 LPID + EIL +RNNRVT+IHGETG GKSSR+P+ML++ G K + F+SQPRR A +AL +RVR L KF ++R+G G +E K + +F TTGY+VRL+AN P + THL+IDEVHERSVDTDLLC ++RLL T+ T+RL++MSAT++ ++ +Y+ + + P+ VG + FPI Sbjct: 299 LPIDDHETEILDDIRNNRVTIIHGETGCGKSSRVPVMLLKSPPPDGSLR--KVKFFISQPRRIAAKALVERVRSCEPDLKDKF--SLRMGGGWKEYESKETQASFVTTGYLVRLLANHPEKFNEMTHLVIDEVHERSVDTDLLCLLSRRLLQTNKTIRLVLMSATLATKMYRDYFSVINEPIHVGVRTFPI 485 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100109.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100109.15.1 >prot_H-elongata_contig100109.15.1 ID=prot_H-elongata_contig100109.15.1|Name=mRNA_H-elongata_contig100109.15.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp TSSTSSSLSAELLMPLEHFHGPTFHALLNEYRATNGRGVEKEAEAGGEGGback to top mRNA from alignment at H-elongata_contig100109:358..2185- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100109.15.1 ID=mRNA_H-elongata_contig100109.15.1|Name=mRNA_H-elongata_contig100109.15.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1828bp|location=Sequence derived from alignment at H-elongata_contig100109:358..2185- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100109:358..2185- >mRNA_H-elongata_contig100109.15.1 ID=mRNA_H-elongata_contig100109.15.1|Name=mRNA_H-elongata_contig100109.15.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at H-elongata_contig100109:358..2185- (Himanthalia elongata Himel1 dioecious)back to top |