mRNA_H-elongata_contig100108.14.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: D7FV79_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV79_ECTSI) HSP 1 Score: 177 bits (449), Expect = 3.950e-52 Identity = 84/115 (73.04%), Postives = 101/115 (87.83%), Query Frame = 1 Query: 46 VEAKRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPPSPIVEFFPVEE--LDHRQRFQD 384 +E + SA+MMTFVLALSVG+AIS+LL WH+YLIC+AQTTIEFYQNQ++RSRA+QWGELW+NPFDVG KGNWQQVFG +PFLL LLPSRR PP P+++FFP+E+ D RQRF D Sbjct: 242 LEMTQHSAIMMTFVLALSVGVAISVLLGWHIYLICSAQTTIEFYQNQSHRSRARQWGELWSNPFDVGCKGNWQQVFGPQPFLLSLLPSRRPPPXPLIDFFPLEDEDQDQRQRFSD 356
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A835ZJ14_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ14_9STRA) HSP 1 Score: 131 bits (329), Expect = 2.400e-33 Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 1 Query: 46 VEAKRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPPSPIVEFF 345 +E +SA++ F+L +S G+A+S+L FWH +L+ TAQTTIEFYQNQT ++RA+Q GEL++N F+ G +GNWQQVFG RP LL +LPSRR PP P+V FF Sbjct: 310 LERTERSAMLFAFILTVSTGVAVSLLFFWHFFLVATAQTTIEFYQNQTRKARARQRGELYSNTFNQGFRGNWQQVFGPRPILLSILPSRRRPPPPVVPFF 409
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A7S2FY83_9STRA (Palmitoyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FY83_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.080e-25 Identity = 53/108 (49.07%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 61 QSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPPSPIVEFFPVEELDHRQRFQD 384 +SAV TF+LALS+G+A+S+L FWH+YL+ T+QTTIEFY NQT + RA+ G+ + NP+D+GMK NW+ VFG + + LLPS + PP P P E + +D Sbjct: 258 RSAVSYTFILALSIGLAVSLLFFWHVYLVLTSQTTIEFYGNQTKKFRARLRGQRYRNPYDMGMKRNWEHVFGHGHWAMVLLPSTKPPPWPXXXSLPHESTETATMLRD 365
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A7S0XLV6_9STRA (Palmitoyltransferase n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0XLV6_9STRA) HSP 1 Score: 106 bits (264), Expect = 8.410e-25 Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 1 Query: 61 QSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPPS 327 +SAVM TFVLALSVGIA+ IL WHL+L+ TAQTTIEFY N T R RA+ G +TNP+D G K NWQ VFG R LL +LPS R PP+ Sbjct: 263 RSAVMFTFVLALSVGIAVFILFAWHLFLVFTAQTTIEFYGNTTLRHRARSRGLKFTNPYDRGFKRNWQHVFGHRHPLLAILPSSRPPPA 351
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A4D9D1P1_9STRA (Palmitoyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1P1_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.250e-24 Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 1 Query: 52 AKRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFG-SRPFLLGLLPSRRAPPSPIV 336 A +SA+++TFVLA SVG+A++ LL WH++LI T QTTIEFY N+ R RA+Q G L+TNP D+G + NWQQVFG P+ LLPS R PP+P V Sbjct: 65 ASARSAIILTFVLAFSVGLALTGLLGWHVFLITTGQTTIEFYINKARRERARQRGFLYTNPHDLGSRQNWQQVFGRDLPWWRSLLPSTRLPPAPGV 160
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: W7TKM1_9STRA (Palmitoyltransferase n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKM1_9STRA) HSP 1 Score: 103 bits (257), Expect = 2.060e-23 Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 1 Query: 52 AKRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFG-SRPFLLGLLPSRRAPPSPIV 336 A +SA+++TFVLA SVG+A++ LL WH++LI T QTTIEFY N+ R RA+Q G L+TNP D+G + NWQQVFG P+ LLPS R PP+P V Sbjct: 281 ASARSAIILTFVLAFSVGLALTGLLGWHVFLITTGQTTIEFYINKARRERARQRGFLYTNPHDLGSRQNWQQVFGRDLPWWRSLLPSTRLPPAPGV 376
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: F0YAZ2_AURAN (Palmitoyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAZ2_AURAN) HSP 1 Score: 95.9 bits (237), Expect = 4.590e-21 Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 1 Query: 46 VEAKRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPP 324 V + ++AVM TFVLA+SVG+A++IL WH YL+ TAQTTIEFY N T R RA+ GE + NP+D G N++QVFG+ L+ +LPS R PP Sbjct: 237 VTNQMRTAVMFTFVLAVSVGLAVAILFGWHCYLVLTAQTTIEFYGNHTLRLRARVRGERFRNPYDRGYANNFRQVFGAAHPLIAVLPSSRKPP 329
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A7S2J2Y9_9EUKA (Palmitoyltransferase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2J2Y9_9EUKA) HSP 1 Score: 95.1 bits (235), Expect = 7.870e-21 Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 1 Query: 55 KRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFG-SRPFLLGLLPSRRAPPSPIVEF 342 +R ++ +FVL LSV A+ + +FWH YL+ T QTTIEFY N+ + S AK GE W NP+ VG++GN++QVFG +R + LLPSRR PP ++F Sbjct: 227 RRDQLMVFSFVLTLSVLFALCLFIFWHTYLVATNQTTIEFYSNRMDASDAKSKGERWANPYSVGIRGNFEQVFGMTRNVIWWLLPSRRPPPGDGLDF 323
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A7S2HMJ2_9STRA (Protein S-acyltransferase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HMJ2_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.470e-20 Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1 Query: 55 KRQSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPPSPIVEFFP 348 + ++ V+ TF+L +SVGIA+ L +H YLI TAQTTIEF+ N R RA+ G W NP+D+G K NW+QV+GS L +LPS R P EFFP Sbjct: 2 EERTPVVFTFMLCVSVGIAVFCLFAFHAYLIFTAQTTIEFHGNCVKRRRARDRGTSWANPYDLGWKDNWRQVYGSMHPFLAMLPSSREP-----EFFP 94
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Match: A0A7S2XIZ5_9STRA (Palmitoyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIZ5_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.720e-20 Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1 Query: 61 QSAVMMTFVLALSVGIAISILLFWHLYLICTAQTTIEFYQNQTNRSRAKQWGELWTNPFDVGMKGNWQQVFGSRPFLLGLLPSRRAPPSPIVEFFPV 351 ++ + TF+L +SVGIA+ LL +H+YLI TAQTTIEF+ N + R A++ G W NP+D+G K NWQQV+GS+PF +L S R P EF PV Sbjct: 138 RTQISFTFMLCISVGIAVLCLLSFHIYLILTAQTTIEFHGNISKRRMARKRGIQWINPYDLGWKKNWQQVYGSKPFFRSILASGREP-----EFLPV 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100108.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100108.14.1 >prot_H-elongata_contig100108.14.1 ID=prot_H-elongata_contig100108.14.1|Name=mRNA_H-elongata_contig100108.14.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp MSPPPQQLRRRSSSVVEAKRQSAVMMTFVLALSVGIAISILLFWHLYLICback to top mRNA from alignment at H-elongata_contig100108:771..2159- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100108.14.1 ID=mRNA_H-elongata_contig100108.14.1|Name=mRNA_H-elongata_contig100108.14.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1389bp|location=Sequence derived from alignment at H-elongata_contig100108:771..2159- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100108:771..2159- >mRNA_H-elongata_contig100108.14.1 ID=mRNA_H-elongata_contig100108.14.1|Name=mRNA_H-elongata_contig100108.14.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig100108:771..2159- (Himanthalia elongata Himel1 dioecious)back to top |