mRNA_H-elongata_contig100096.13.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A6H5KX57_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX57_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.090e-35 Identity = 78/125 (62.40%), Postives = 87/125 (69.60%), Query Frame = 1 Query: 1 RTYQARIVEECEKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTS-FDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372 R YQ+RI +C NTIVVLPTGSGKT++AAE IKRLG PALFLVPT L+V QQA AL SWTGL V KY GG LP S F +LV+TP AFKAAQ G L W RVV+FDEV HH+ Sbjct: 25 RGYQSRIANKCLHDNTIVVLPTGSGKTLLAAEAIKRLGPPALFLVPTRLMVDQQAEALGSWTGLSVTKYMGGAGLPPSTFKILVSTPQAFKAAQQN------GIGHLQWSAFRVVIFDEV--HHV 141
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A1Q9EU77_SYMMI (Endoribonuclease Dicer-like 2a n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EU77_SYMMI) HSP 1 Score: 132 bits (333), Expect = 1.080e-33 Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 1 Query: 1 RTYQARIVEEC-EKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372 R YQAR++EE NT+VVLPTG+GKT+IA+E+I+RLG P LFLVPT LLV+QQA A++ WTGL+VA++ GG++LP FDVLV+TP AF+ Q + G + W ++VVFDEV HH+ Sbjct: 4 RAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSLPAHFDVLVSTPKAFQMTQSK------GAAVFQWDAFKLVVFDEV--HHV 120
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A812TEW1_9DINO (DCL2A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TEW1_9DINO) HSP 1 Score: 132 bits (333), Expect = 1.800e-33 Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 1 Query: 1 RTYQARIVEEC-EKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372 R YQAR++EE NT+VVLPTG+GKT+IA+E+I+RLG P LFLVPT LLV+QQA A++ WTGL+VA++ GG++LP FDVLV+TP AF+ Q + G + W ++VVFDEV HH+ Sbjct: 4 RAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSLPAHFDVLVSTPKAFQMTQSK------GAAVFQWDAFKLVVFDEV--HHV 120
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A7S4V2U7_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V2U7_9DINO) HSP 1 Score: 127 bits (318), Expect = 1.300e-31 Identity = 71/125 (56.80%), Postives = 87/125 (69.60%), Query Frame = 1 Query: 1 RTYQARIVEECEKA-NTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372 R YQ+RIV + E + NT+VVLPTG+GKT+IAAE+IKR+G LFLVPT LLV+QQA A+ WT L V +Y GG LP+ F VLV+TP AF+ AQ A G L W R+VVFDEV HH+ Sbjct: 4 RPYQSRIVGQAEASGNTVVVLPTGAGKTLIAAELIKRVGGTCLFLVPTCLLVEQQAKAVGKWTKLSVGEYMGGATLPSRFQVLVSTPKAFQVAQ------AKGTVSLAWSAFRLVVFDEV--HHV 120
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A812RBN0_9DINO (DCL2A protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RBN0_9DINO) HSP 1 Score: 126 bits (317), Expect = 1.870e-31 Identity = 69/125 (55.20%), Postives = 87/125 (69.60%), Query Frame = 1 Query: 1 RTYQARIVEEC-EKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372 R YQ RIV++ NTIVVLPTG+GKT+IA+E++KRLG LFLVPT LLV+QQA A++ WTGLRVA++ GG ++P FDVLV+TP AF H A G W ++VVFDEV HH+ Sbjct: 20 RGYQQRIVDDALTTGNTIVVLPTGAGKTLIASELMKRLGPGCLFLVPTCLLVEQQAKAIREWTGLRVAEFMGGASMPQQFDVLVSTPKAF------HTMQAKGVRSFRWDAFKLVVFDEV--HHV 136
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A6H5L3L3_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L3_9PHAE) HSP 1 Score: 117 bits (293), Expect = 8.030e-31 Identity = 71/125 (56.80%), Postives = 85/125 (68.00%), Query Frame = 1 Query: 1 RTYQARIVEECEKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWT-GLRVAKYHGGLALPT-SFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHH 369 R YQ+RI CE+ NT+VVLPTGSGKTIIAAEVIK+ ALFLVPT LV+QQA L++WT R+A+ GG L SFDVLVATP AF A Q + R+ L W +VVVFDEVR ++ Sbjct: 49 RPYQSRIARACERDNTLVVLPTGSGKTIIAAEVIKQRPPRALFLVPTRHLVKQQAKVLRAWTFRRRIAQLRGGDELQKKSFDVLVATPDAFCAVQGKE------RTRLAWARFQVVVFDEVRSNY 167
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A2V3IZ19_9FLOR (Endoribonuclease Dicer-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ19_9FLOR) HSP 1 Score: 117 bits (293), Expect = 2.600e-28 Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 1 Query: 1 RTYQARIVEECEKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHH 369 R YQ RI+++ NT+VVLPTG+GKT+IA EVI+ L PALF+VPTVLLV+QQ+ A+ + T +VA+ HGG +LP S+ V+VATP F A Q + L W R VVFDEV HH Sbjct: 15 RPYQQRIIDQAVLKNTLVVLPTGAGKTLIATEVIRTLSPPALFIVPTVLLVKQQSEAIAAHTNYKVAQLHGGKSLPHSWHVVVATPACFHATQSAY-------PSLAWARFRSVVFDEV--HH 128
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A812IWI1_SYMPI (CFAP61 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IWI1_SYMPI) HSP 1 Score: 110 bits (275), Expect = 1.240e-25 Identity = 64/123 (52.03%), Postives = 84/123 (68.29%), Query Frame = 1 Query: 7 YQARIVEECEKA-NTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372 YQ RIV E A N IVVLPTG+GKT+IA+E+I LG P L VPT +LV+QQA A + WTGL+VA++ GG+++P FDVLV+TP AF+ Q R G + + ++VVFDEV HH+ Sbjct: 1998 YQERIVTEVRAAGNAIVVLPTGAGKTLIASELITGLGPPCL--VPTCMLVEQQARAAREWTGLQVAEFMGGVSVPQRFDVLVSTPKAFQMTQSR------GAASFRFQGFKLVVFDEV--HHV 2110
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: K0T118_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T118_THAOC) HSP 1 Score: 95.1 bits (235), Expect = 2.920e-20 Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 1 Query: 64 TGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQS-WTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372 T SGKT++AAE+I RLG+P++F VPTV LV QQA+A+ S L + ++HG LPT+FDVLV TP AF AQ R C L W +VVVFDEV HH+ Sbjct: 434 TRSGKTLVAAEIIARLGTPSVFFVPTVPLVGQQATAIGSRLPSLSIGEFHGEKPLPTTFDVLVTTPKAFDIAQTRGSCA------LSWSNFKVVVFDEV--HHV 529
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A836C8Q2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q2_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.690e-16 Identity = 59/128 (46.09%), Postives = 71/128 (55.47%), Query Frame = 1 Query: 1 RTYQARIVEECEKANTIVVLPTGSGKTIIAAEVI-----KRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHH 369 R YQ RI + K N +VVLPTG+GKT++AAE I K+ ALFLVPT LV QQA ++ TGL VA+ GG AL VLVATP A++ G S L V+V DEV HH Sbjct: 29 RGYQERICMDMAKGNHLVVLPTGAGKTLVAAECIAAELWKQPTKRALFLVPTRNLVHQQAQVIEGETGLDVAELKGGNALRIGCRVLVATPGAYQQQ---------GASVLKLASFSVIVVDEV--HH 145 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100096.13.1 >prot_H-elongata_contig100096.13.1 ID=prot_H-elongata_contig100096.13.1|Name=mRNA_H-elongata_contig100096.13.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp RTYQARIVEECEKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLback to top mRNA from alignment at H-elongata_contig100096:780..1154+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100096.13.1 ID=mRNA_H-elongata_contig100096.13.1|Name=mRNA_H-elongata_contig100096.13.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig100096:780..1154+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100096:780..1154+ >mRNA_H-elongata_contig100096.13.1 ID=mRNA_H-elongata_contig100096.13.1|Name=mRNA_H-elongata_contig100096.13.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig100096:780..1154+ (Himanthalia elongata Himel1 dioecious)back to top |