mRNA_H-elongata_contig100085.11.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A067CDT4_SAPPC (Protein DPCD n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CDT4_SAPPC) HSP 1 Score: 105 bits (261), Expect = 2.580e-26 Identity = 45/92 (48.91%), Postives = 69/92 (75.00%), Query Frame = 1 Query: 16 QPTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291 QPTF R+ T W+W +RNLPYP+ETY + +D++ + +V+RT+NKKYFK F++P+MVR L A++V+F+HD T L ++Y KP++V+ E Sbjct: 85 QPTFLCREAATHWEWRVRNLPYPKETYAIGIDDDAQTIVIRTSNKKYFKRFQIPAMVRQSQRLSAAAVSFTHDNNT-LVVHYKKPDAVMAVE 175
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A6P4ZQP5_BRABE (Protein DPCD n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZQP5_BRABE) HSP 1 Score: 104 bits (259), Expect = 6.270e-26 Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 19 PTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291 P F RDT+ A+ W IRNLPYP ETYN+ VD + R +++RTTNKKY+K F +P M RAGLPL+ +VN++H TL I Y KP V+ E Sbjct: 92 PIFTRRDTKKAFMWRIRNLPYPIETYNVTVDTDNRCVIVRTTNKKYYKKFTIPDMDRAGLPLEQRAVNYAH-ANNTLVITYEKPAGVLEME 181
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A024TDT6_9STRA (Protein DPCD n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TDT6_9STRA) HSP 1 Score: 103 bits (258), Expect = 8.240e-26 Identity = 45/91 (49.45%), Postives = 65/91 (71.43%), Query Frame = 1 Query: 19 PTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291 P F R++ W+W +RNLPYP++TY + +D+ + +++RTTNKKYFK FRVP+MVRA LPLQ SS++ +H T L + Y KP+ V+ E Sbjct: 90 PIFLCRESTATWEWRVRNLPYPKDTYVITIDQATQEIIIRTTNKKYFKRFRVPAMVRASLPLQQSSLSHTHSNNT-LVVQYEKPDEVVEAE 179
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A2Y9RNM8_TRIMA (Protein DPCD n=3 Tax=Eutheria TaxID=9347 RepID=A0A2Y9RNM8_TRIMA) HSP 1 Score: 103 bits (257), Expect = 1.520e-25 Identity = 48/97 (49.48%), Postives = 70/97 (72.16%), Query Frame = 1 Query: 1 WLLLLQPTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291 W+ LLQP F +DT+ +++W IRNLPYP++ Y++ VD+++R LV+RTTNKKY+K F +P + R LPL SS++F+H TL I Y KP+ V+ E Sbjct: 94 WICLLQPIFIRKDTKMSFQWRIRNLPYPKDVYSVCVDQKERCLVIRTTNKKYYKKFSIPDLDRYQLPLDDSSLSFAH-ANCTLIISYQKPKEVLVAE 189
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A6A4ZHR6_9STRA (Protein DPCD (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZHR6_9STRA) HSP 1 Score: 100 bits (249), Expect = 2.930e-25 Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 19 PTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291 P F R++ W+W +RNLPYP++TY + +DE + + +RTTNKKYFK FR+P+M RA LPL S+++ SH T L I Y KP++V+ E Sbjct: 18 PIFLCRESTEVWEWRVRNLPYPKDTYLITIDESSQEITIRTTNKKYFKRFRIPAMARANLPLDRSALSHSHSNNT-LVIQYDKPDAVLEAE 107
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: W4FTS3_9STRA (Protein DPCD n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FTS3_9STRA) HSP 1 Score: 102 bits (254), Expect = 3.370e-25 Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 1 Query: 19 PTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291 P F R++ W+W +RNLPYP++TY + +DE + L++RTTNKKYFK FR+P+M RA LPL S+++ SH T L I Y KP++V+ E Sbjct: 90 PIFLCRESTEVWEWRVRNLPYPKDTYLITIDESSQELIIRTTNKKYFKRFRIPAMARANLPLDRSALSHSHSNNT-LVIQYDKPDAVLEAE 179
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A6G0XJM7_9STRA (Protein DPCD n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJM7_9STRA) HSP 1 Score: 100 bits (250), Expect = 8.030e-25 Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1 Query: 13 LQPTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291 + P F R+ W+W +RNLPYP+ETY + +D+ + +V+RTTNKKYFK FR+P+M RA L L +S++ SH T L I Y KP+ VI +E Sbjct: 71 VNPIFLCREAEEVWEWRVRNLPYPKETYLISIDDTTQEIVIRTTNKKYFKRFRIPAMARANLRLDGTSLSHSHSNNT-LVIQYEKPDQVIEDE 162
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A836CLT6_9STRA (Protein DPCD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT6_9STRA) HSP 1 Score: 100 bits (249), Expect = 2.090e-24 Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 19 PTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291 P + +RD AW+WH+ N+PY E TY++ V +E + LVLRTTN+K+FK +RVP M R GL L AS V+F H G TTL + Y KP I++E Sbjct: 85 PVWCARDATDAWEWHVLNIPYEESTYSVTVSDETQELVLRTTNRKFFKRWRVPGMARLGLRLAASPVSFRHSG-TTLVVRYLKPPQAIDQE 174
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A7M7PDT1_STRPU (Protein DPCD n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PDT1_STRPU) HSP 1 Score: 99.4 bits (246), Expect = 2.200e-24 Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1 Query: 19 PTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVI 282 P F +DTR A++W IRNLPYP ETY+L VD++ R ++RT+NKKY+K F +P M RAGLPLQ S + +H T L I Y KP ++ Sbjct: 54 PIFTRKDTRQAFQWRIRNLPYPIETYSLSVDQDTRCCIIRTSNKKYYKKFSIPDMDRAGLPLQQSDFSMAHSNNT-LIINYKKPAEIL 140
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Match: A0A7S3XNY6_HETAK (Protein DPCD (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNY6_HETAK) HSP 1 Score: 99.0 bits (245), Expect = 7.040e-24 Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1 Query: 13 LQPTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKKYFKVFRVPSMVRAGLPLQASSVNFSHDGRTTLTIYYAKPESVINEE 291 + P+FH RD W+W +RNLPYP +TY++ V++E LVLRT+NKKYFK ++VP +VR GL L+ + F H T L I YAKP +V+ E Sbjct: 94 VNPSFHPRDNTECWEWRVRNLPYPLDTYSITVEKEGTELVLRTSNKKYFKRWKVPFLVRLGLLLEDEHIEFDHQNNT-LIIQYAKPTAVLELE 185 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100085.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100085.11.1 >prot_H-elongata_contig100085.11.1 ID=prot_H-elongata_contig100085.11.1|Name=mRNA_H-elongata_contig100085.11.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp WLLLLQPTFHSRDTRTAWKWHIRNLPYPEETYNLHVDEEKRVLVLRTTNKback to top mRNA from alignment at H-elongata_contig100085:787..1255- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100085.11.1 ID=mRNA_H-elongata_contig100085.11.1|Name=mRNA_H-elongata_contig100085.11.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=469bp|location=Sequence derived from alignment at H-elongata_contig100085:787..1255- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100085:787..1255- >mRNA_H-elongata_contig100085.11.1 ID=mRNA_H-elongata_contig100085.11.1|Name=mRNA_H-elongata_contig100085.11.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig100085:787..1255- (Himanthalia elongata Himel1 dioecious)back to top |