mRNA_H-elongata_contig100053.9.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: D8LJD7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD7_ECTSI) HSP 1 Score: 156 bits (395), Expect = 1.130e-42 Identity = 80/94 (85.11%), Postives = 87/94 (92.55%), Query Frame = 1 Query: 1 KLAEGILRRKSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASLE 282 +L EGILRRKSFYFQQRTGKLDMRAIGRVD+ V+K+VD+DTLQ +LENITFA V+EDDLRLYSDQCFLNLFRL QLLLEYLLSVQDTLA SLE Sbjct: 33 RLVEGILRRKSFYFQQRTGKLDMRAIGRVDIASVVKDVDVDTLQAHLENITFASVSEDDLRLYSDQCFLNLFRLSQLLLEYLLSVQDTLATSLE 126
BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: B8BW77_THAPS (Ubiquitin-like domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW77_THAPS) HSP 1 Score: 103 bits (257), Expect = 9.260e-24 Identity = 54/93 (58.06%), Postives = 71/93 (76.34%), Query Frame = 1 Query: 7 AEGILRRKSFYFQQRTG--KLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASL 279 AE +L +K F F R G ++D+R I RVD+ R++KEVDIDTLQ +LE IT+AD+ EDD LYS+ CF+ LF++ QL LEYLL VQDTL+A+L Sbjct: 26 AETLLYQKGFQFTARYGEDRIDLRDISRVDIHRIVKEVDIDTLQSFLEIITYADITEDDFDLYSNDCFVKLFQVSQLTLEYLLDVQDTLSANL 118
BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: A0A7R9YCD3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCD3_9STRA) HSP 1 Score: 100 bits (249), Expect = 9.110e-23 Identity = 47/92 (51.09%), Postives = 72/92 (78.26%), Query Frame = 1 Query: 7 AEGILRRKSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASLE 282 AE +L+ FYFQQR+G+LD+R + R+D++RV++EVD+DTLQ++LEN+ ++D++E DL SD L + +L QL +EYLL VQDTLA +++ Sbjct: 27 AEPVLKGDGFYFQQRSGRLDLRRLSRIDLERVVREVDVDTLQMHLENLCYSDISEGDLAFASDAQVLQVLKLSQLTVEYLLHVQDTLAENVD 118
BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: A0A7S2S367_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S367_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.120e-22 Identity = 48/84 (57.14%), Postives = 70/84 (83.33%), Query Frame = 1 Query: 16 ILRRKSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTL 267 I+ +KSFYFQQR GK+D+RAI RVD++ ++++VDI+TLQ +LENITF+++ + D++ Y+D F+ LFRL QL +EYLL+VQ TL Sbjct: 87 IVPQKSFYFQQRHGKIDLRAISRVDLEALVEQVDIETLQTHLENITFSELDDADMKTYTDDNFMKLFRLTQLTVEYLLNVQHTL 170
BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: A0A2R5FYZ7_9STRA (Zinc finger protein DZIP1L n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYZ7_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 3.940e-22 Identity = 48/88 (54.55%), Postives = 69/88 (78.41%), Query Frame = 1 Query: 10 EGILRRKSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAA 273 E + K+FYFQQR GKLD+R I R+D+++V+++VDI+TLQ YLEN+TF+++ + DL +D+ FL LFR+ QL +EYLL+VQ TL A Sbjct: 59 ENVRPEKNFYFQQRHGKLDLRGIARLDLEQVVEDVDIETLQTYLENLTFSELEDRDLHTCTDETFLKLFRVTQLTIEYLLNVQHTLYA 146
BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: A0A485LAG3_9STRA (Aste57867_18047 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAG3_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.080e-20 Identity = 45/82 (54.88%), Postives = 63/82 (76.83%), Query Frame = 1 Query: 28 KSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAA 273 +SF F+QR GK+D RAI ++D++RV++E DIDT+Q LEN+ F+DV D YSD+ FL LF++ QL +EYLLSVQ++L A Sbjct: 63 RSFSFRQRRGKIDSRAIAQIDLNRVVRETDIDTIQCQLENLAFSDVTLQDFNQYSDEYFLKLFQVAQLTVEYLLSVQESLVA 144
BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: K3XA98_GLOUD (C2H2-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XA98_GLOUD) HSP 1 Score: 92.4 bits (228), Expect = 7.910e-20 Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 1 Query: 28 KSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASLE 282 +SF F+QR GKLD+RAI R+D+++++ DID +Q +LEN+ FADV +D++ YSD FL LF++ QL LEYLL+VQD+L E Sbjct: 128 RSFSFRQRAGKLDVRAIARLDLEKIVATTDIDAIQRHLENLAFADVTLEDVQRYSDAYFLKLFQIAQLTLEYLLNVQDSLVTHSE 212
BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: A0A7S3HAZ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAZ7_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.030e-19 Identity = 41/89 (46.07%), Postives = 66/89 (74.16%), Query Frame = 1 Query: 13 GILRRKSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASL 279 G+ + F+FQQR G LD+R+I ++++++++EVD+D LQ+++ENITF ++ E+DLR +D + LFR+ QL+LEYLL QD L +L Sbjct: 55 GLFGSEGFFFQQRRGHLDLRSIAAINLEKLVREVDVDVLQIHIENITFCNLREEDLRYLTDPQIVKLFRISQLMLEYLLYSQDKLVDNL 143
BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: A0A024UCD6_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCD6_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.460e-19 Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 1 Query: 28 KSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASLE 282 +SF F+QR GKLD RAI ++D++RV++E DIDT+Q LEN+ F+D+ D YSD+ FL LF++ QL +EYLL+VQ++L E Sbjct: 82 RSFSFRQRRGKLDTRAIAQIDLNRVVRETDIDTIQNQLENLAFSDITLQDFNQYSDEYFLKLFQIAQLTVEYLLNVQESLVVHAE 166
BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Match: W4FDC5_9STRA (C2H2-type domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDC5_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.000e-19 Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 1 Query: 28 KSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENITFADVAEDDLRLYSDQCFLNLFRLGQLLLEYLLSVQDTLAASLE 282 +SF F+QR GKLD RAI ++D++RV++E DIDT+Q LEN+ F+D+ D YSD+ FL LF++ QL +EYLL+VQ++L E Sbjct: 78 RSFSFRQRRGKLDTRAIAQIDLNRVVRETDIDTIQNQLENLAFSDITLQDFNQYSDEYFLKLFQIAQLTVEYLLNVQESLVMHTE 162 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100053.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100053.9.1 >prot_H-elongata_contig100053.9.1 ID=prot_H-elongata_contig100053.9.1|Name=mRNA_H-elongata_contig100053.9.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp KLAEGILRRKSFYFQQRTGKLDMRAIGRVDVDRVIKEVDIDTLQVYLENIback to top mRNA from alignment at H-elongata_contig100053:1506..2150- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100053.9.1 ID=mRNA_H-elongata_contig100053.9.1|Name=mRNA_H-elongata_contig100053.9.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=645bp|location=Sequence derived from alignment at H-elongata_contig100053:1506..2150- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100053:1506..2150- >mRNA_H-elongata_contig100053.9.1 ID=mRNA_H-elongata_contig100053.9.1|Name=mRNA_H-elongata_contig100053.9.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig100053:1506..2150- (Himanthalia elongata Himel1 dioecious)back to top |