Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 353 |
| Cds size | 309 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929542.775304-UTR-H-elongata_contig100:22498..22541 | 1622929542.775304-UTR-H-elongata_contig100:22498..22541 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig100 22499..22541 + |
| 1691679060.6894937-UTR-H-elongata_contig100:22498..22541 | 1691679060.6894937-UTR-H-elongata_contig100:22498..22541 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig100 22499..22541 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929542.7906237-CDS-H-elongata_contig100:22541..22850 | 1622929542.7906237-CDS-H-elongata_contig100:22541..22850 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig100 22542..22850 + |
| 1691679060.7172935-CDS-H-elongata_contig100:22541..22850 | 1691679060.7172935-CDS-H-elongata_contig100:22541..22850 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig100 22542..22850 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100.2.1 >prot_H-elongata_contig100.2.1 ID=prot_H-elongata_contig100.2.1|Name=mRNA_H-elongata_contig100.2.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MYRGRTTLNGWICGHAFTGTGSGNYFFLRQAHLSFVLTIPTTDRLPLTLS
FRSLISAFHGIAQRLSRASMRTAASTSCTKKRKRRQEHCQWVLCVLCKWL
TLQ back to topmRNA from alignment at H-elongata_contig100:22499..22850+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig100.2.1 ID=mRNA_H-elongata_contig100.2.1|Name=mRNA_H-elongata_contig100.2.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=352bp|location=Sequence derived from alignment at H-elongata_contig100:22499..22850+ (Himanthalia elongata Himel1 dioecious)
CATTAACCGCGGTTTCTAAAGGTTATTGCTTGTTCTTAGGGAGATGTATA
GGGGTAGGACGACCTTAAACGGCTGGATCTGCGGTCACGCTTTCACAGGA
ACAGGAAGTGGCAATTACTTTTTCCTGCGCCAGGCACACTTGTCGTTTGT
CCTAACCATACCTACGACGGATCGCTTGCCCTTAACCCTTTCTTTTCGTT
CGCTAATCTCGGCCTTTCATGGAATCGCACAACGGTTAAGCCGAGCGTCC
ATGCGGACGGCAGCATCTACTTCGTGCACCAAGAAACGAAAGAGACGACA
AGAACATTGCCAGTGGGTGCTGTGCGTGCTCTGCAAGTGGCTAACACTAC
AA back to topCoding sequence (CDS) from alignment at H-elongata_contig100:22499..22850+ >mRNA_H-elongata_contig100.2.1 ID=mRNA_H-elongata_contig100.2.1|Name=mRNA_H-elongata_contig100.2.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig100:22499..22850+ (Himanthalia elongata Himel1 dioecious)
ATGTATAGGGGTAGGACGACCTTAAACGGCTGGATCTGCGGTCACGCTTT
CACAGGAACAGGAAGTGGCAATTACTTTTTCCTGCGCCAGGCACACTTGT
CGTTTGTCCTAACCATACCTACGACGGATCGCTTGCCCTTAACCCTTTCT
TTTCGTTCGCTAATCTCGGCCTTTCATGGAATCGCACAACGGTTAAGCCG
AGCGTCCATGCGGACGGCAGCATCTACTTCGTGCACCAAGAAACGAAAGA
GACGACAAGAACATTGCCAGTGGGTGCTGTGCGTGCTCTGCAAGTGGCTA
ACACTACAAATGTATAGGGGTAGGACGACCTTAAACGGCTGGATCTGCGG
TCACGCTTTCACAGGAACAGGAAGTGGCAATTACTTTTTCCTGCGCCAGG
CACACTTGTCGTTTGTCCTAACCATACCTACGACGGATCGCTTGCCCTTA
ACCCTTTCTTTTCGTTCGCTAATCTCGGCCTTTCATGGAATCGCACAACG
GTTAAGCCGAGCGTCCATGCGGACGGCAGCATCTACTTCGTGCACCAAGA
AACGAAAGAGACGACAAGAACATTGCCAGTGGGTGCTGTGCGTGCTCTGC
AAGTGGCTAACACTACAA back to top
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