mRNA_H-akashiwo_Contig1051.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1051.5.1
Unique NamemRNA_H-akashiwo_Contig1051.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1051.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1051contigH-akashiwo_Contig1051:194062..195458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size626
Hectar predicted targeting categoryother localisation
Exons4
Cds size396
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1051.5.1prot_H-akashiwo_Contig1051.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1051 194282..195448 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387062.9095333-UTR-H-akashiwo_Contig1051:194061..1942811681387062.9095333-UTR-H-akashiwo_Contig1051:194061..194281Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1051 194062..194281 -
1681387062.9522934-UTR-H-akashiwo_Contig1051:195448..1954581681387062.9522934-UTR-H-akashiwo_Contig1051:195448..195458Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1051 195449..195458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387062.918316-CDS-H-akashiwo_Contig1051:194281..1943641681387062.918316-CDS-H-akashiwo_Contig1051:194281..194364Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1051 194282..194364 -
1681387062.92635-CDS-H-akashiwo_Contig1051:194701..1948301681387062.92635-CDS-H-akashiwo_Contig1051:194701..194830Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1051 194702..194830 -
1681387062.9350138-CDS-H-akashiwo_Contig1051:195143..1952341681387062.9350138-CDS-H-akashiwo_Contig1051:195143..195234Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1051 195144..195234 -
1681387062.9436896-CDS-H-akashiwo_Contig1051:195355..1954481681387062.9436896-CDS-H-akashiwo_Contig1051:195355..195448Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1051 195356..195448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1051.5.1

>prot_H-akashiwo_Contig1051.5.1 ID=prot_H-akashiwo_Contig1051.5.1|Name=mRNA_H-akashiwo_Contig1051.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=132bp
MHSLARTRKHRIAVINELYENELRKIKELHDKAIDQLKEQMIYEVNQQIR
KLENARDGNPDDGQRRHTRNLRSKARRGGEGPPSPDGGAGVNPCGPLPPR
SRRKALFNMYLTYALQPDEINEDFELIKSGC*
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mRNA from alignment at H-akashiwo_Contig1051:194062..195458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1051.5.1 ID=mRNA_H-akashiwo_Contig1051.5.1|Name=mRNA_H-akashiwo_Contig1051.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1397bp|location=Sequence derived from alignment at H-akashiwo_Contig1051:194062..195458- (Heterosigma akashiwo CCMP452)
AGACAAGAGCATGCACTCATTAGCTCGAACAAGAAAGCACCGTATTGCAG
TAATCAATGAACTTTACGAAAACGAACTTCGAAAGATTAAAGAACTTCAT
GATGTAAGCAGTTTCGAGAGTAGCAATCCAGTCCCACGATTTGCAACTGC
ATGATACAGCCCTATTCGTGTTTCTCTCTCTCATGAATGCTATATTCACT
TGGTAATTTTTCAACCCTTACCAGAAAGCGATCGATCAACTCAAGGAACA
GATGATTTATGAAGTCAATCAGCAAATTAGAAAACTTGAAAATGCCAGAG
ATGGCAACCCTGACGGTACGGGATGAACACATATTACATGCGTCATTCAT
ATTTGAAATTACGGACTTCTTTTGCTCTTTTTACTGCCTTTTGCAAGCAG
GCGGTCAAATTATGAGTTTGAGGAATCAATAGTAGTGTGAGTTTTGAAGA
GGGAAATTGCTTCTGCTTGATGCAGGAGGTGACTTTCGTGCTTCCGGCGT
TGAAGCAGTTTGATTCATAATCGTTTCTAGTTCCACTACTCACCTGGGCA
TGGGCAACTCCCGCTCTCCCCCCTTTGTTTGAGACGGCGTGCCCTGACGA
CGACGGGGGTGGGTGCGAATGGCGACAGATGGCCAGCGCCGGCACACCCG
CAACCTGCGCAGCAAAGCCCGGCGAGGAGGGGAGGGCCCCCCCTCGCCAG
ACGGCGGCGCCGGCGTGAACCCGTGCGGCCCGCTCCCGCCGCGCTCCCGC
CGGAAGGGTGAGCGGTGGTGTCGGGTCTCAAGGGGAGGGCGCCGTCGGCC
CTCCTTAGAAGATAACTCCACACGCCCACATGCACCTCACTCACCCTGCT
TGCCCCTCACCCTGCCACTGTGGCGCGTTGAGTGCGCTGAGATGGCTAGT
GTCTACTCACCCGGCCCTTGCTGCAGTATTTTGGGGCTCTGCTGCTGGTT
GGTATGTACATCTCTTAGATGGAGCATGGATATAATCCAACATAATCTTT
CTTGCTGACGGGTACATATTTCGAGTCTTTTGTGATGTGTGTTTTCCTTT
CTCTACACCACTGTACTGTCATTTCCCCTTGTTTGTTGTTGCAGCTCTAT
TCAATATGTATCTGACCTATGCTCTCCAACCTGACGAAATCAATGAAGAT
TTTGAATTGATTAAGAGTGGATGCTAGCTCGCTAAAGAATGGAATGATAA
ATAAGATATATGAAGAATGTGCCGATACTACTCCACAACAAGCAGCAAGT
ATTTACTACATATATGATTTTCTTATTCAGTTTGCTTGCAGCAGCAGCAA
GTTTGCGTTGTTGTTGAAATGTTTGAGTGTGCTGTTGCATTTTTATGATG
ACAAGTTTGGGCTATACAATAACGTATTTGTGGGTATAGTATAGCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1051:194062..195458-

>mRNA_H-akashiwo_Contig1051.5.1 ID=mRNA_H-akashiwo_Contig1051.5.1|Name=mRNA_H-akashiwo_Contig1051.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=396bp|location=Sequence derived from alignment at H-akashiwo_Contig1051:194062..195458- (Heterosigma akashiwo CCMP452)
ATGCACTCATTAGCTCGAACAAGAAAGCACCGTATTGCAGTAATCAATGA
ACTTTACGAAAACGAACTTCGAAAGATTAAAGAACTTCATGATAAAGCGA
TCGATCAACTCAAGGAACAGATGATTTATGAAGTCAATCAGCAAATTAGA
AAACTTGAAAATGCCAGAGATGGCAACCCTGACGATGGCCAGCGCCGGCA
CACCCGCAACCTGCGCAGCAAAGCCCGGCGAGGAGGGGAGGGCCCCCCCT
CGCCAGACGGCGGCGCCGGCGTGAACCCGTGCGGCCCGCTCCCGCCGCGC
TCCCGCCGGAAGGCTCTATTCAATATGTATCTGACCTATGCTCTCCAACC
TGACGAAATCAATGAAGATTTTGAATTGATTAAGAGTGGATGCTAG
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