mRNA_H-akashiwo_Contig1.235.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.235.1
Unique NamemRNA_H-akashiwo_Contig1.235.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.235.1 vs. uniprot
Match: A0A6S9FJW3_HETAK (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FJW3_HETAK)

HSP 1 Score: 702 bits (1812), Expect = 1.300e-249
Identity = 373/374 (99.73%), Postives = 374/374 (100.00%), Query Frame = -3 
Query:   79 MTGFWGAVLLLVFCFNTFCFAQVGEGFSSEDAATFKGLAEAVLNDITNSSPGKVNSAVKLLLDLEGNVSDAHKASVCSSSANHLFSAGQDVKTAYYALSTTNLLGCPPASASDTTKTAMTTLLGLSDPSLNELYFAVMLDLESTQGKTLNLGAVKAALADLSNNGLYADDVEGVATISNSWRVLNMLQALLGAFQNDADLEQLAVAHLEYLPTAADDDIADAKLLAGLVSLQPGLKLKSKQTRAIVGDLVALKHTPSVCTAMKVYRAFRAAATLPNAPLVLKLPASTVAYAKAGVSVDVQVQDLLGAPAAVGEVALAHLVSDEGDEDAARRPFAARGADLFSQTLALEPAAYQLDVEVATAAGGKAKFRKRLVV 1200
            MTGFWGAVLLLVFCFNTFCFAQVGEGFSSEDAATFKGLAEAVLNDITNSSPGKVNSAVKLLLDLEGNVSDAHKASVCSSSANHLFSAGQDVKTAYYALSTTNLLGCPPASASDTTKTAMTTLLGLSDPSLNELYFAVMLDLESTQGKTLNLGAVKA+LADLSNNGLYADDVEGVATISNSWRVLNMLQALLGAFQNDADLEQLAVAHLEYLPTAADDDIADAKLLAGLVSLQPGLKLKSKQTRAIVGDLVALKHTPSVCTAMKVYRAFRAAATLPNAPLVLKLPASTVAYAKAGVSVDVQVQDLLGAPAAVGEVALAHLVSDEGDEDAARRPFAARGADLFSQTLALEPAAYQLDVEVATAAGGKAKFRKRLVV
Sbjct:    1 MTGFWGAVLLLVFCFNTFCFAQVGEGFSSEDAATFKGLAEAVLNDITNSSPGKVNSAVKLLLDLEGNVSDAHKASVCSSSANHLFSAGQDVKTAYYALSTTNLLGCPPASASDTTKTAMTTLLGLSDPSLNELYFAVMLDLESTQGKTLNLGAVKASLADLSNNGLYADDVEGVATISNSWRVLNMLQALLGAFQNDADLEQLAVAHLEYLPTAADDDIADAKLLAGLVSLQPGLKLKSKQTRAIVGDLVALKHTPSVCTAMKVYRAFRAAATLPNAPLVLKLPASTVAYAKAGVSVDVQVQDLLGAPAAVGEVALAHLVSDEGDEDAARRPFAARGADLFSQTLALEPAAYQLDVEVATAAGGKAKFRKRLVV 374
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BLAST of mRNA_H-akashiwo_Contig1.235.1 vs. uniprot
Match: A0A7S2UVK7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVK7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.820e-7
Identity = 55/165 (33.33%), Postives = 87/165 (52.73%), Query Frame = -3 
Query:  379 LSDPSLNELYFAVMLDLESTQGKTLNLGAVKAALADLSNNG--LY-ADDVEGVATISNSWRVLNMLQALLGAFQNDA----DLEQLAVA-HLEYL-PTAADDDIADAKLLAGLVSLQPGL------KLKSKQTRAIVGDLVALKHTPSVCTAMKVYRAFRAAATL 828
            L + SL  LY+ V++ L +     L++ A+  A+ D  ++   +Y + D  G     ++   L ML+A+L A Q +     D+    VA  + YL PT ++ D+AD  ++    +L  GL        K+KQ RAI+G+LVA+KH+  V  A+KV  AFR  A L
Sbjct:   69 LQEGSLASLYYPVLV-LTALGSPALDVPAIVEAIRDAQDDDGRMYDSHDDAGPPASKHNHLALEMLEAMLPAIQKEGGEVLDMATTVVAASISYLLPTGSNGDVADGTMVR-FQALAKGLGVAGLASFKAKQMRAIIGELVAVKHSECVSFAVKVVEAFRVMAGL 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6S9FJW3_HETAK1.300e-24999.73Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A7S2UVK7_9STRA1.820e-733.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:9620759..9622011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1255
Hectar predicted targeting categoryother localisation
Exons1
Cds size756
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387032.7685056-CDS-H-akashiwo_Contig1:9620758..96215141681387032.7685056-CDS-H-akashiwo_Contig1:9620758..9621514Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9620759..9621514 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387032.777962-UTR-H-akashiwo_Contig1:9621514..96220111681387032.777962-UTR-H-akashiwo_Contig1:9621514..9622011Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 9621515..9622011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.235.1prot_H-akashiwo_Contig1.235.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 9620759..9621514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.235.1

>prot_H-akashiwo_Contig1.235.1 ID=prot_H-akashiwo_Contig1.235.1|Name=mRNA_H-akashiwo_Contig1.235.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=252bp
PATPCALRRWRAAASTPRRAHLQRDGDHQALPELGLAAGRGGHLDVQLVG
RGLQRQRLREEVGAPGRERPPGRVLVALVGDKVRQRHLAHSRRGPQQVLH
LHIHADARLGVGHGRGRQLQHQGGVRQRGGGPEGAVDLHRGADARSVLQG
DKVAHYSAGLLALQLQAGLKGHQPRQELGVRNVVVCGGGQVFQMRNSELL
QVSIVLESSEQCLEHVQHPPGIADSRHPFYIIGIQAVVGQVSQGSLDCTK
I*
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mRNA from alignment at H-akashiwo_Contig1:9620759..9622011+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.235.1 ID=mRNA_H-akashiwo_Contig1.235.1|Name=mRNA_H-akashiwo_Contig1.235.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1253bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9620759..9622011+ (Heterosigma akashiwo CCMP452)
CCCGCCACTCCCTGCGCCCTACGCCGCTGGCGCGCGGCCGCGTCCACGCC
CCGCCGCGCGCACCTCCAGCGGGATGGTGACCACCAGGCGCTTCCGGAAC
TTGGCCTTGCCGCCGGCCGCGGTGGCCACCTCGACGTCCAGCTGGTAGGC
CGCGGGCTCCAGCGCCAGCGTCTGCGAGAAGAGGTCGGCGCCCCGGGCCG
CGAACGGCCGCCGGGCCGCGTCCTCGTCGCCCTCGTCGGAGACAAGGTGC
GCCAGCGCCACCTCGCCCACAGCCGCCGGGGCCCCCAGCAGGTCCTGCAC
CTGCACATCCACGCTGACGCCCGCCTTGGCGTAGGCCACGGTCGAGGCCG
GCAGCTTCAGCACCAGGGGGGCGTTCGGCAGCGTGGCGGCGGCCCGGAAG
GCGCGGTAGACCTTCATCGCGGTGCAGACGCTCGGAGTGTGCTTCAGGGC
GACAAGGTCGCCCACTATAGCGCGGGTCTGCTTGCTCTTCAGCTTCAGGC
CGGGCTGAAGGGACACCAGCCCCGCCAGGAGCTTGGCGTCCGCAATGTCG
TCGTCTGCGGCGGTGGGCAGGTATTCCAGATGCGCAACAGCGAGCTGCTC
CAGGTCAGCATCGTTCTGGAAAGCTCCGAGCAGTGCCTGGAGCATGTTCA
GCACCCTCCAGGAATTGCTGATAGTCGCCACCCCTTCTACATCATCGGCA
TACAGGCCGTTGTTGGACAGGTCAGCCAGGGCAGCCTTGACTGCACCAAG
ATTTAGAGTCTTGCCCTGTGTGCTCTCCAGGTCAAGCATTACAGCAAAGT
AAAGCTCGTTGAGAGAAGGATCTGACAGCCCAAGTAGCGTTGTCATGGCA
GTCTTTGTAGTATCGGAGGCTGAGGCAGGTGGGCAACCCAGCAAGTTGGT
TGTGCTCAAAGCATAATAGGCGGTCTTTACATCCTGTCCAGCGCTGAATA
GATGATTCGCAGAAGATGAGCAAACAGAAGCTTTATGAGCATCAGAGACG
TTACCCTCGAGGTCAAGAAGCAGTTTTACGGCAGAGTTAACTTTCCCAGG
GCTTGAATTTGTGATATCATTCAGTACTGCTTCTGCCAGCCCTTTGAATG
TTGCTGCATCCTCGGAAGAAAACCCCTCTCCAACTTGGGCAAAACAAAAG
GTGTTAAAGCAGAAAACCAGCAGCAAAACTGCCCCCCAAAATCCTGTCAT
GCTCAAACCAGCTAGCGGCTTGTATGTGTGTATGAAAATTCGTTATAATG
GTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:9620759..9622011+

>mRNA_H-akashiwo_Contig1.235.1 ID=mRNA_H-akashiwo_Contig1.235.1|Name=mRNA_H-akashiwo_Contig1.235.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=756bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9620759..9622011+ (Heterosigma akashiwo CCMP452)
CCCGCCACTCCCTGCGCCCTACGCCGCTGGCGCGCGGCCGCGTCCACGCC
CCGCCGCGCGCACCTCCAGCGGGATGGTGACCACCAGGCGCTTCCGGAAC
TTGGCCTTGCCGCCGGCCGCGGTGGCCACCTCGACGTCCAGCTGGTAGGC
CGCGGGCTCCAGCGCCAGCGTCTGCGAGAAGAGGTCGGCGCCCCGGGCCG
CGAACGGCCGCCGGGCCGCGTCCTCGTCGCCCTCGTCGGAGACAAGGTGC
GCCAGCGCCACCTCGCCCACAGCCGCCGGGGCCCCCAGCAGGTCCTGCAC
CTGCACATCCACGCTGACGCCCGCCTTGGCGTAGGCCACGGTCGAGGCCG
GCAGCTTCAGCACCAGGGGGGCGTTCGGCAGCGTGGCGGCGGCCCGGAAG
GCGCGGTAGACCTTCATCGCGGTGCAGACGCTCGGAGTGTGCTTCAGGGC
GACAAGGTCGCCCACTATAGCGCGGGTCTGCTTGCTCTTCAGCTTCAGGC
CGGGCTGAAGGGACACCAGCCCCGCCAGGAGCTTGGCGTCCGCAATGTCG
TCGTCTGCGGCGGTGGGCAGGTATTCCAGATGCGCAACAGCGAGCTGCTC
CAGGTCAGCATCGTTCTGGAAAGCTCCGAGCAGTGCCTGGAGCATGTTCA
GCACCCTCCAGGAATTGCTGATAGTCGCCACCCCTTCTACATCATCGGCA
TACAGGCCGTTGTTGGACAGGTCAGCCAGGGCAGCCTTGACTGCACCAAG
ATTTAG
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