mRNA_H-akashiwo_Contig1046.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1046.5.1
Unique NamemRNA_H-akashiwo_Contig1046.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1046.5.1 vs. uniprot
Match: A0A7S3XVV4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVV4_HETAK)

HSP 1 Score: 372 bits (954), Expect = 6.360e-125
Identity = 219/306 (71.57%), Postives = 232/306 (75.82%), Query Frame = 3 
Query:   33 SGR-GLKQEAPGLPRTPSLDALHALQMVGDGLGQGAGSVSGMFSTFPSSSDLSSQGTNAPASQVQRAPGGAAALTATSNALAGAEDGVAATGPGRPLTKGSSASTSWIANTSFGDLANLGSPEEWENRLKMIPSGSAXXXXXXXXXXXXXXNLKDFXXXXXXXXIPGFPSFKGLGMGDRNTSVDDFFSLVTEGTIPAPQPEVLGMPLIDQVVG-GSRAKQQQAAA-GAGAAAEHPSHGNETKAAPSPGDLAQPENGQNTEQGSLLGKEGDHRDSGPPNKKVKTEEDGAASSPQPHAFETQQVAKEE 941
            SGR  +KQE PGLPRTPSLDALHALQMVGDGL  GAGSVSG+FSTFPSSSDL+SQ  NAPASQVQ APGGAA LTATSNAL  AED V A+GPGRPL KG  A TSWIANTSFGDL NLGSPEEWENRLKMIPSGSA              N+K+F        IPGFPS KGLGMGDRNTSVDDFFSLVTEGTIPAPQPEVLGMPLIDQVVG  SR KQ Q A  GAG   EHPSH NETKA  SPGD AQP+NGQN+      GKE +H+     +KKVKTEE G A +P P AFETQQV  +E
Sbjct:   13 SGRPAVKQEGPGLPRTPSLDALHALQMVGDGLSHGAGSVSGLFSTFPSSSDLTSQSNNAPASQVQCAPGGAA-LTATSNALTSAEDSVTASGPGRPLAKGGPAGTSWIANTSFGDLYNLGSPEEWENRLKMIPSGSAEELTKILKKVPSLNNIKEFSSLKRIESIPGFPSLKGLGMGDRNTSVDDFFSLVTEGTIPAPQPEVLGMPLIDQVVGRNSRTKQHQPAEEGAGIVVEHPSHENETKAVRSPGDSAQPDNGQNSR--PPFGKEDEHQXXXXXHKKVKTEE-GTADTPTPQAFETQQVTNQE 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1046.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XVV4_HETAK6.360e-12571.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1046contigH-akashiwo_Contig1046:207952..209120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1169
Hectar predicted targeting categoryother localisation
Exons1
Cds size840
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.647513-UTR-H-akashiwo_Contig1046:207951..2080581681387061.647513-UTR-H-akashiwo_Contig1046:207951..208058Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1046 207952..208058 +
1681387061.6716177-UTR-H-akashiwo_Contig1046:208898..2091201681387061.6716177-UTR-H-akashiwo_Contig1046:208898..209120Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1046 208899..209120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.6609898-CDS-H-akashiwo_Contig1046:208058..2088981681387061.6609898-CDS-H-akashiwo_Contig1046:208058..208898Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1046 208059..208898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1046.5.1prot_H-akashiwo_Contig1046.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1046 208059..208898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1046.5.1

>prot_H-akashiwo_Contig1046.5.1 ID=prot_H-akashiwo_Contig1046.5.1|Name=mRNA_H-akashiwo_Contig1046.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=280bp
MVGDGLGQGAGSVSGMFSTFPSSSDLSSQGTNAPASQVQRAPGGAAALTA
TSNALAGAEDGVAATGPGRPLTKGSSASTSWIANTSFGDLANLGSPEEWE
NRLKMIPSGSAEELTKILKKVPSLNNLKDFSSLKRIESIPGFPSFKGLGM
GDRNTSVDDFFSLVTEGTIPAPQPEVLGMPLIDQVVGGSRAKQQQAAAGA
GAAAEHPSHGNETKAAPSPGDLAQPENGQNTEQGSLLGKEGDHRDSGPPN
KKVKTEEDGAASSPQPHAFETQQVAKEEC*
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mRNA from alignment at H-akashiwo_Contig1046:207952..209120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1046.5.1 ID=mRNA_H-akashiwo_Contig1046.5.1|Name=mRNA_H-akashiwo_Contig1046.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1169bp|location=Sequence derived from alignment at H-akashiwo_Contig1046:207952..209120+ (Heterosigma akashiwo CCMP452)
CTGGGCGACGAGGGGCGCCGACGAGCGGAGGATCTGGGCGTGGGCTAAAA
CAGGAGGCGCCCGGACTGCCTCGAACACCAAGCCTCGACGCCTTGCATGC
GTTGCAGATGGTGGGGGACGGTCTGGGCCAGGGTGCGGGTTCGGTGTCCG
GCATGTTTTCAACCTTTCCCTCTTCTTCAGACTTGTCGAGCCAAGGCACC
AACGCGCCGGCGTCTCAGGTCCAGCGTGCCCCGGGCGGCGCCGCCGCCCT
GACCGCCACCTCCAACGCCCTGGCCGGTGCGGAGGACGGCGTGGCGGCGA
CGGGGCCGGGGCGACCGCTGACCAAGGGGAGCTCAGCCAGCACGTCTTGG
ATCGCCAACACCAGCTTCGGGGACCTTGCCAACCTCGGTTCACCAGAAGA
GTGGGAAAATAGACTGAAGATGATACCGAGCGGCTCAGCAGAGGAGCTGA
CCAAAATACTCAAAAAAGTGCCGTCTTTGAACAACCTGAAAGATTTTTCC
AGCCTCAAAAGGATTGAGAGCATCCCTGGCTTTCCATCCTTCAAGGGCCT
GGGGATGGGAGACCGGAACACCTCAGTGGACGACTTCTTCAGCCTCGTGA
CGGAGGGCACCATCCCCGCCCCGCAGCCAGAGGTGCTCGGCATGCCGCTG
ATTGACCAGGTGGTTGGCGGCAGCCGCGCCAAGCAGCAGCAGGCGGCTGC
TGGGGCGGGCGCTGCGGCGGAACATCCTTCACATGGAAATGAAACCAAAG
CAGCCCCTTCACCCGGAGATTTAGCCCAGCCAGAGAATGGCCAAAACACG
GAACAAGGTTCACTCCTGGGCAAGGAGGGTGACCATCGAGACTCTGGGCC
TCCAAATAAGAAAGTAAAAACAGAGGAGGATGGTGCAGCCAGCTCGCCCC
AACCCCATGCCTTTGAAACACAGCAAGTTGCAAAGGAGGAATGCTAAGGA
AGGAGAGAGGCACTTGCTGCTGACACTGGTAGAAACGATGCCTGTACGAT
TCACTTGATAACCAGACCAAAAAGCACAACTGTGCTGTAGTAAGGTGTGT
AGCATGTACATTACATTTTTCTTCCATTTTTGTATTCTTGTTGAGCAGTA
TAGATGTTGTTGGTTCTTCTTCTTCTATCTTCAAATTTTGAGTGCTAAAA
ATAATCAAAAAGTATGTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1046:207952..209120+

>mRNA_H-akashiwo_Contig1046.5.1 ID=mRNA_H-akashiwo_Contig1046.5.1|Name=mRNA_H-akashiwo_Contig1046.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=840bp|location=Sequence derived from alignment at H-akashiwo_Contig1046:207952..209120+ (Heterosigma akashiwo CCMP452)
ATGGTGGGGGACGGTCTGGGCCAGGGTGCGGGTTCGGTGTCCGGCATGTT
TTCAACCTTTCCCTCTTCTTCAGACTTGTCGAGCCAAGGCACCAACGCGC
CGGCGTCTCAGGTCCAGCGTGCCCCGGGCGGCGCCGCCGCCCTGACCGCC
ACCTCCAACGCCCTGGCCGGTGCGGAGGACGGCGTGGCGGCGACGGGGCC
GGGGCGACCGCTGACCAAGGGGAGCTCAGCCAGCACGTCTTGGATCGCCA
ACACCAGCTTCGGGGACCTTGCCAACCTCGGTTCACCAGAAGAGTGGGAA
AATAGACTGAAGATGATACCGAGCGGCTCAGCAGAGGAGCTGACCAAAAT
ACTCAAAAAAGTGCCGTCTTTGAACAACCTGAAAGATTTTTCCAGCCTCA
AAAGGATTGAGAGCATCCCTGGCTTTCCATCCTTCAAGGGCCTGGGGATG
GGAGACCGGAACACCTCAGTGGACGACTTCTTCAGCCTCGTGACGGAGGG
CACCATCCCCGCCCCGCAGCCAGAGGTGCTCGGCATGCCGCTGATTGACC
AGGTGGTTGGCGGCAGCCGCGCCAAGCAGCAGCAGGCGGCTGCTGGGGCG
GGCGCTGCGGCGGAACATCCTTCACATGGAAATGAAACCAAAGCAGCCCC
TTCACCCGGAGATTTAGCCCAGCCAGAGAATGGCCAAAACACGGAACAAG
GTTCACTCCTGGGCAAGGAGGGTGACCATCGAGACTCTGGGCCTCCAAAT
AAGAAAGTAAAAACAGAGGAGGATGGTGCAGCCAGCTCGCCCCAACCCCA
TGCCTTTGAAACACAGCAAGTTGCAAAGGAGGAATGCTAA
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