mRNA_H-akashiwo_Contig1041.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1041.2.1
Unique NamemRNA_H-akashiwo_Contig1041.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1041.2.1 vs. uniprot
Match: A0A6V1R4I2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R4I2_HETAK)

HSP 1 Score: 650 bits (1676), Expect = 4.090e-234
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 3 
Query:   15 MGNKASSEVNRRAGRQAPLNRFSPPAVTSHGNPQDESEPKVLAYLLPRSTILQSTEMVFPTFPVFDELDDLTPVYNWEEAPSFLFISHSYAAGKVDDRFQTKFRILKLILKKMKQITHIWIDYSCSKDIDHTLASLCDIVHCAQRVILLPLQPGPHGGAPSIAIPHYTGRAWCAVESAICLSRNPSKVRVASVQAAQFTAAETFHLELLSVPAHDNRWGLRALVQEMRALRELVEAKDTLGFLRRYQESRPGDKERLWAFLDAKRFQVFQHAGLRRNSDFFVRTRHAEKGTAYPEPLYDEATQKKLKDGEAASIFCCFMALH 980
            MGNKASSEVNRRAGRQAPLNRFSPPAVTSHGNPQDESEPKVLAYLLPRSTILQSTEMVFPTFPVFDELDDLTPVYNWEEAPSFLFISHSYAAGKVDDRFQTKFRILKLILKKMKQITHIWIDYSCSKDIDHTLASLCDIVHCAQRVILLPLQPGPHGGAPSIAIPHYTGRAWCAVESAICLSRNPSKVRVASVQAAQFTAAETFHLELLSVPAHDNRWGLRALVQEMRALRELVEAKDTLGFLRRYQESRPGDKERLWAFLDAKRFQVFQHAGLRRNSDFFVRTRHAEKGTAYPEPLYDEATQKKLKDGEAASIFCCFMALH
Sbjct:    1 MGNKASSEVNRRAGRQAPLNRFSPPAVTSHGNPQDESEPKVLAYLLPRSTILQSTEMVFPTFPVFDELDDLTPVYNWEEAPSFLFISHSYAAGKVDDRFQTKFRILKLILKKMKQITHIWIDYSCSKDIDHTLASLCDIVHCAQRVILLPLQPGPHGGAPSIAIPHYTGRAWCAVESAICLSRNPSKVRVASVQAAQFTAAETFHLELLSVPAHDNRWGLRALVQEMRALRELVEAKDTLGFLRRYQESRPGDKERLWAFLDAKRFQVFQHAGLRRNSDFFVRTRHAEKGTAYPEPLYDEATQKKLKDGEAASIFCCFMALH 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1041.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1R4I2_HETAK4.090e-234100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1041contigH-akashiwo_Contig1041:69549..70807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1259
Hectar predicted targeting categoryother localisation
Exons1
Cds size969
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.3133733-UTR-H-akashiwo_Contig1041:69548..695621681387061.3133733-UTR-H-akashiwo_Contig1041:69548..69562Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1041 69549..69562 +
1681387061.341394-UTR-H-akashiwo_Contig1041:70531..708071681387061.341394-UTR-H-akashiwo_Contig1041:70531..70807Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1041 70532..70807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.3252091-CDS-H-akashiwo_Contig1041:69562..705311681387061.3252091-CDS-H-akashiwo_Contig1041:69562..70531Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1041 69563..70531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1041.2.1prot_H-akashiwo_Contig1041.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1041 69563..70531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1041.2.1

>prot_H-akashiwo_Contig1041.2.1 ID=prot_H-akashiwo_Contig1041.2.1|Name=mRNA_H-akashiwo_Contig1041.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=323bp
MGNKASSEVNRRAGRQAPLNRFSPPAVTSHGNPQDESEPKVLAYLLPRST
ILQSTEMVFPTFPVFDELDDLTPVYNWEEAPSFLFISHSYAAGKVDDRFQ
TKFRILKLILKKMKQITHIWIDYSCSKDIDHTLASLCDIVHCAQRVILLP
LQPGPHGGAPSIAIPHYTGRAWCAVESAICLSRNPSKVRVASVQAAQFTA
AETFHLELLSVPAHDNRWGLRALVQEMRALRELVEAKDTLGFLRRYQESR
PGDKERLWAFLDAKRFQVFQHAGLRRNSDFFVRTRHAEKGTAYPEPLYDE
ATQKKLKDGEAASIFCCFMALH*
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mRNA from alignment at H-akashiwo_Contig1041:69549..70807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1041.2.1 ID=mRNA_H-akashiwo_Contig1041.2.1|Name=mRNA_H-akashiwo_Contig1041.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1259bp|location=Sequence derived from alignment at H-akashiwo_Contig1041:69549..70807+ (Heterosigma akashiwo CCMP452)
ATCATCATCATCAAATGGGAAACAAGGCAAGCAGCGAGGTGAACCGCAGG
GCTGGCCGCCAGGCTCCTCTCAACAGATTCTCTCCTCCTGCTGTTACAAG
CCATGGAAACCCTCAGGACGAAAGCGAGCCAAAAGTTCTTGCTTACCTCT
TGCCTCGATCGACAATCTTACAGAGTACTGAAATGGTCTTCCCCACATTT
CCCGTCTTTGATGAACTCGATGATCTCACCCCTGTTTACAACTGGGAGGA
GGCGCCAAGCTTTCTATTCATCTCGCATTCATATGCTGCGGGAAAAGTGG
ATGATCGGTTTCAAACCAAATTCAGGATCCTGAAGCTCATACTGAAAAAA
ATGAAGCAGATCACTCACATCTGGATTGACTACAGCTGCTCGAAGGACAT
TGACCACACCCTCGCGAGCCTGTGCGACATTGTGCATTGCGCGCAGCGCG
TAATTCTGCTCCCCTTGCAACCTGGCCCACACGGGGGCGCCCCCAGCATC
GCAATCCCCCACTACACCGGCCGCGCCTGGTGCGCCGTGGAGAGCGCCAT
CTGCCTATCCCGCAACCCATCCAAGGTGCGTGTGGCCAGCGTGCAGGCCG
CGCAGTTCACTGCGGCGGAGACCTTCCACCTTGAGCTGCTGTCGGTGCCC
GCGCACGACAACCGCTGGGGCCTGCGCGCCCTCGTGCAGGAAATGCGTGC
CCTGCGCGAGCTGGTGGAGGCCAAGGACACCCTCGGCTTCCTGCGCCGCT
ACCAGGAGTCCCGCCCGGGGGACAAGGAGCGGCTGTGGGCGTTCCTGGAC
GCGAAGCGCTTCCAGGTGTTCCAGCACGCGGGCCTCCGCCGCAACAGCGA
CTTCTTCGTGCGCACGCGGCACGCCGAGAAGGGCACGGCCTACCCGGAGC
CGCTGTACGACGAGGCCACGCAGAAGAAGCTGAAGGACGGCGAGGCGGCG
TCCATCTTCTGCTGTTTCATGGCCCTGCATTGATGGAGTGAGAGCCTGTG
CTTGGTCCATGGCCCTGCATTGAGCGAGTGAGGGCCTGTGCTGGGTTCCA
GCTTGGTGGCGGGGCTGGCTGCTGAGCTTGATGGTGGAACAGGGCTATGG
GGGGAGGGGTTACTTTGGCTTCGTCCTTGGCCTGCCTTGCAGTTGGGAAG
AGTGATTACAGCTGCCGCCATTGCGTATGTGCTCTTCTGGTATATACTAG
GTACCACAGGTTGATGTTGTTCCGACTCATCATCATTCATGTGTGTACTG
TTGCCTCAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1041:69549..70807+

>mRNA_H-akashiwo_Contig1041.2.1 ID=mRNA_H-akashiwo_Contig1041.2.1|Name=mRNA_H-akashiwo_Contig1041.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=969bp|location=Sequence derived from alignment at H-akashiwo_Contig1041:69549..70807+ (Heterosigma akashiwo CCMP452)
ATGGGAAACAAGGCAAGCAGCGAGGTGAACCGCAGGGCTGGCCGCCAGGC
TCCTCTCAACAGATTCTCTCCTCCTGCTGTTACAAGCCATGGAAACCCTC
AGGACGAAAGCGAGCCAAAAGTTCTTGCTTACCTCTTGCCTCGATCGACA
ATCTTACAGAGTACTGAAATGGTCTTCCCCACATTTCCCGTCTTTGATGA
ACTCGATGATCTCACCCCTGTTTACAACTGGGAGGAGGCGCCAAGCTTTC
TATTCATCTCGCATTCATATGCTGCGGGAAAAGTGGATGATCGGTTTCAA
ACCAAATTCAGGATCCTGAAGCTCATACTGAAAAAAATGAAGCAGATCAC
TCACATCTGGATTGACTACAGCTGCTCGAAGGACATTGACCACACCCTCG
CGAGCCTGTGCGACATTGTGCATTGCGCGCAGCGCGTAATTCTGCTCCCC
TTGCAACCTGGCCCACACGGGGGCGCCCCCAGCATCGCAATCCCCCACTA
CACCGGCCGCGCCTGGTGCGCCGTGGAGAGCGCCATCTGCCTATCCCGCA
ACCCATCCAAGGTGCGTGTGGCCAGCGTGCAGGCCGCGCAGTTCACTGCG
GCGGAGACCTTCCACCTTGAGCTGCTGTCGGTGCCCGCGCACGACAACCG
CTGGGGCCTGCGCGCCCTCGTGCAGGAAATGCGTGCCCTGCGCGAGCTGG
TGGAGGCCAAGGACACCCTCGGCTTCCTGCGCCGCTACCAGGAGTCCCGC
CCGGGGGACAAGGAGCGGCTGTGGGCGTTCCTGGACGCGAAGCGCTTCCA
GGTGTTCCAGCACGCGGGCCTCCGCCGCAACAGCGACTTCTTCGTGCGCA
CGCGGCACGCCGAGAAGGGCACGGCCTACCCGGAGCCGCTGTACGACGAG
GCCACGCAGAAGAAGCTGAAGGACGGCGAGGCGGCGTCCATCTTCTGCTG
TTTCATGGCCCTGCATTGA
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