mRNA_H-akashiwo_Contig1.109.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.109.1
Unique NamemRNA_H-akashiwo_Contig1.109.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.109.1 vs. uniprot
Match: A0A7S3XSP4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSP4_HETAK)

HSP 1 Score: 301 bits (772), Expect = 3.650e-94
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 
Query:    1 ILRLPWSEFPIVDVFDDEVDPEELQSSGSTTKGFQLRRTAMFTDSTSRWIMLLTILFWLPVAALWMHFFLVLPVADLVSLEGVGINASCSITSGGCWHRPHTYSVFGGRHAAWTCEVNVTLGAAPGDGWPLAAHYAGSDIPWG 429
            ILRLPWSEFPIVDVFDDEVDPEELQSSGSTTKGFQLRRTAMFTDSTSRWIMLLTILFWLPVAALWMHFFLVLPVADLVSLEGVGINASCSITSGGCWHRPHTYSVFGGRHAAWTCEVNVTLGAAPGDGWPLAAHYAGSDIPWG
Sbjct:  726 ILRLPWSEFPIVDVFDDEVDPEELQSSGSTTKGFQLRRTAMFTDSTSRWIMLLTILFWLPVAALWMHFFLVLPVADLVSLEGVGINASCSITSGGCWHRPHTYSVFGGRHAAWTCEVNVTLGAAPGDGWPLAAHYAGSDIPWG 868
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BLAST of mRNA_H-akashiwo_Contig1.109.1 vs. uniprot
Match: A0A7S3XT43_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT43_HETAK)

HSP 1 Score: 129 bits (323), Expect = 3.570e-33
Identity = 68/145 (46.90%), Postives = 89/145 (61.38%), Query Frame = 1 
Query:    4 LRLPWSEFPIVDVFDDEV-DPEELQSSGSTTKGFQLRRTAMFTDSTSRWIMLLTILFWLPVAALWMHFFLVLPVADLVSLEGVGIN--ASCSITSGGCWHRPHTYSVFGGRHAAWTCEVNVTLGAAPGDGWPLAAHYAGSDIPWG 429
            LRLPW+ FP+VD+F  E  DP+   + G   K F++  TA  +D    W+ML T LF L +  +W+   L+ P+A +     VGI+  A CSI+S GCWHRPH  S F G + AWTC VN+TL  +P DGW L  +Y G DIPWG
Sbjct:  107 LRLPWASFPLVDMFGQEGGDPQYDDNQG---KEFEVVHTAYLSDKFMGWLMLFTKLFTLLIVVIWLQICLIQPIAQVSEQMDVGISEHAVCSISSQGCWHRPHKNS-FPGHYKAWTCSVNITLSPSPVDGWWLEGYYQGVDIPWG 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3XSP4_HETAK3.650e-94100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3XT43_HETAK3.570e-3346.90Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:4551155..4551585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size433
Hectar predicted targeting categorysignal anchor
Exons1
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387032.590443-CDS-H-akashiwo_Contig1:4551154..45515831681387032.590443-CDS-H-akashiwo_Contig1:4551154..4551583Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 4551155..4551583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.109.1prot_H-akashiwo_Contig1.109.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 4551155..4551583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.109.1

>prot_H-akashiwo_Contig1.109.1 ID=prot_H-akashiwo_Contig1.109.1|Name=mRNA_H-akashiwo_Contig1.109.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=143bp
ILRLPWSEFPIVDVFDDEVDPEELQSSGSTTKGFQLRRTAMFTDSTSRWI
MLLTILFWLPVAALWMHFFLVLPVADLVSLEGVGINASCSITSGGCWHRP
HTYSVFGGRHAAWTCEVNVTLGAAPGDGWPLAAHYAGSDIPWG
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mRNA from alignment at H-akashiwo_Contig1:4551155..4551585+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.109.1 ID=mRNA_H-akashiwo_Contig1.109.1|Name=mRNA_H-akashiwo_Contig1.109.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=431bp|location=Sequence derived from alignment at H-akashiwo_Contig1:4551155..4551585+ (Heterosigma akashiwo CCMP452)
ATTCTCAGGCTTCCTTGGTCGGAATTTCCCATTGTTGATGTGTTTGATGA
TGAAGTTGACCCAGAAGAACTGCAGTCATCAGGGAGCACAACTAAGGGAT
TCCAGCTGAGGCGCACGGCGATGTTTACAGATTCGACCTCACGCTGGATC
ATGCTCCTCACCATTCTTTTCTGGCTGCCAGTTGCTGCACTTTGGATGCA
CTTCTTCCTCGTGCTGCCTGTAGCAGATTTAGTCAGCCTTGAAGGGGTCG
GCATCAACGCCAGCTGCTCCATCACCTCGGGCGGCTGCTGGCACCGGCCC
CACACCTACAGCGTCTTCGGCGGCCGCCACGCcgCGTGGACCTGCGAGGT
caaCGTCACCCTGggcgccGCCCCCGGCGACGGCTGGCCGCTCGCCGCCC
ACTACGCCGGGAGTGACATCCCCTGGGGCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:4551155..4551585+

>mRNA_H-akashiwo_Contig1.109.1 ID=mRNA_H-akashiwo_Contig1.109.1|Name=mRNA_H-akashiwo_Contig1.109.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=429bp|location=Sequence derived from alignment at H-akashiwo_Contig1:4551155..4551585+ (Heterosigma akashiwo CCMP452)
ATTCTCAGGCTTCCTTGGTCGGAATTTCCCATTGTTGATGTGTTTGATGA
TGAAGTTGACCCAGAAGAACTGCAGTCATCAGGGAGCACAACTAAGGGAT
TCCAGCTGAGGCGCACGGCGATGTTTACAGATTCGACCTCACGCTGGATC
ATGCTCCTCACCATTCTTTTCTGGCTGCCAGTTGCTGCACTTTGGATGCA
CTTCTTCCTCGTGCTGCCTGTAGCAGATTTAGTCAGCCTTGAAGGGGTCG
GCATCAACGCCAGCTGCTCCATCACCTCGGGCGGCTGCTGGCACCGGCCC
CACACCTACAGCGTCTTCGGCGGCCGCCACGCcgCGTGGACCTGCGAGGT
caaCGTCACCCTGggcgccGCCCCCGGCGACGGCTGGCCGCTCGCCGCCC
ACTACGCCGGGAGTGACATCCCCTGGGGC
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