mRNA_H-akashiwo_Contig1027.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1027.3.1
Unique NamemRNA_H-akashiwo_Contig1027.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1027.3.1 vs. uniprot
Match: A0A7S3UQJ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQJ4_HETAK)

HSP 1 Score: 97.8 bits (242), Expect = 1.740e-23
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 DTLYLPSYWHHEVTSTPDEESEINVAVNFWYRNETYFEREEEYL 132
            DTLYLPSYWHHEVTSTPDEESEINVAVNFWYRNETYFE+EE+YL
Sbjct:  232 DTLYLPSYWHHEVTSTPDEESEINVAVNFWYRNETYFEQEEQYL 275
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BLAST of mRNA_H-akashiwo_Contig1027.3.1 vs. uniprot
Match: A0A835YVM0_9STRA (Cupin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.980e-9
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 DTLYLPSYWHHEVTSTPDEESE-INVAVNFWYRNETYFEREEEYLRISRTGKTKL 162
            + L++P+YWHHEV S  D+E+   N+AVNFW++N TYFE E+  L  +   K++L
Sbjct:  650 EVLFMPAYWHHEVRSKGDDENPPSNIAVNFWFKNTTYFEAEQRGLASAAGFKSEL 704
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BLAST of mRNA_H-akashiwo_Contig1027.3.1 vs. uniprot
Match: A0A7S3W181_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W181_EMIHU)

HSP 1 Score: 56.2 bits (134), Expect = 6.000e-8
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 DTLYLPSYWHHEVTSTPDEESEINVAVNFWYRNET 105
            +TLYLP++WHHEV S    + E+NVAVNFW+RN T
Sbjct:  207 ETLYLPAFWHHEVHSRCAAQGELNVAVNFWFRNAT 241
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BLAST of mRNA_H-akashiwo_Contig1027.3.1 vs. uniprot
Match: A0A7S2HX29_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HX29_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 7.700e-8
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    1 DTLYLPSYWHHEVTS-------------TPDEESEINVAVNFWYRNET 105
            +TLYLP+YWHHEV S             T D  S +NVAVNFW+RNET
Sbjct:   98 ETLYLPAYWHHEVYSHAAHVPSGSRLVATDDTLSSLNVAVNFWFRNET 145
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BLAST of mRNA_H-akashiwo_Contig1027.3.1 vs. uniprot
Match: R1F592_EMIHU (JmjC domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F592_EMIHU)

HSP 1 Score: 56.2 bits (134), Expect = 8.460e-8
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 DTLYLPSYWHHEVTSTPDEESEINVAVNFWYRNET 105
            +TLYLP++WHHEV S    + E+NVAVNFW+RN T
Sbjct:  532 ETLYLPAFWHHEVHSRCAAQGELNVAVNFWFRNAT 566
[Close]
BLAST of mRNA_H-akashiwo_Contig1027.3.1 vs. uniprot
Match: R1E3C1_EMIHU (JmjC domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E3C1_EMIHU)

HSP 1 Score: 56.2 bits (134), Expect = 8.480e-8
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 DTLYLPSYWHHEVTSTPDEESEINVAVNFWYRNET 105
            +TLYLP++WHHEV S    + E+NVAVNFW+RN T
Sbjct:  699 ETLYLPAFWHHEVHSRCAAQGELNVAVNFWFRNAT 733
[Close]
BLAST of mRNA_H-akashiwo_Contig1027.3.1 vs. uniprot
Match: A0A0A7CNZ7_9STRA (Phospholipase A2, group IVB n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A0A7CNZ7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.930e-6
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:    1 DTLYLPSYWHHEVTSTPDEESEINVAVNFWY 93
            D LYLPS+W HEV S+P E+   NVAVNFWY
Sbjct:  400 DALYLPSFWWHEVRSSPAEDDPRNVAVNFWY 430
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BLAST of mRNA_H-akashiwo_Contig1027.3.1 vs. uniprot
Match: A0A0M0J434_9EUKA (Phospholipase group n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J434_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 1.950e-6
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 DTLYLPSYWHHEVTSTPDEESE--INVAVNFWYRNET 105
            +TL LP+YWHHEV S P E     +NVAVNFW+RNE+
Sbjct:  742 ETLLLPAYWHHEVYSHPAEPDGEGLNVAVNFWFRNES 778
[Close]
BLAST of mRNA_H-akashiwo_Contig1027.3.1 vs. uniprot
Match: T0QQF9_SAPDV (JmjC domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QQF9_SAPDV)

HSP 1 Score: 50.8 bits (120), Expect = 6.770e-6
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:    1 DTLYLPSYWHHEVTSTPDEESEINVAVNFWY 93
            D L+LPS+W HEVTS+P  +   NVAVNFWY
Sbjct:  406 DALFLPSFWWHEVTSSPATDEPRNVAVNFWY 436
[Close]
BLAST of mRNA_H-akashiwo_Contig1027.3.1 vs. uniprot
Match: A0A7S1VTE2_9EUKA (Hypothetical protein n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1VTE2_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 9.140e-6
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    7 LYLPSYWHHEVTSTPDEESEINVAVNFWY---RNETYF 111
            LYLP++WHH+VT  P ++S++ +AVN+WY   RN+  F
Sbjct:  289 LYLPAHWHHKVTQQPTQQSDVVIAVNYWYEIQRNDPAF 326
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1027.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7S3UQJ4_HETAK1.740e-2395.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YVM0_9STRA1.980e-947.27Cupin-like domain-containing protein n=1 Tax=Tribo... [more]
A0A7S3W181_EMIHU6.000e-862.86Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S2HX29_9EUKA7.700e-854.17Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
R1F592_EMIHU8.460e-862.86JmjC domain-containing protein n=1 Tax=Emiliania h... [more]
R1E3C1_EMIHU8.480e-862.86JmjC domain-containing protein n=1 Tax=Emiliania h... [more]
A0A0A7CNZ7_9STRA1.930e-667.74Phospholipase A2, group IVB n=1 Tax=Achlya hypogyn... [more]
A0A0M0J434_9EUKA1.950e-662.16Phospholipase group n=1 Tax=Chrysochromulina tobin... [more]
T0QQF9_SAPDV6.770e-664.52JmjC domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A7S1VTE2_9EUKA9.140e-650.00Hypothetical protein n=1 Tax=Sexangularia sp. CB-2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1027contigH-akashiwo_Contig1027:111322..115243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G3Q0
PFAMsCupin_8,Glyco_transf_41,Methyltransf_11,TPR_11,TPR_16,TPR_2,TPR_8
Model size167
Max annot lvl2759|Eukaryota
KEGG koko:K19219
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue6.08e-10
EggNOG OGsCOG1226@1|root,COG3914@1|root,KOG2508@2759|Eukaryota,KOG4626@2759|Eukaryota
Descriptionprotein N-acetylglucosaminyltransferase activity
Cds size165
COG categoryO
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387055.693582-CDS-H-akashiwo_Contig1027:111321..1113471681387055.693582-CDS-H-akashiwo_Contig1027:111321..111347Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1027 111322..111347 +
1681387055.7110174-CDS-H-akashiwo_Contig1027:115104..1152431681387055.7110174-CDS-H-akashiwo_Contig1027:115104..115243Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1027 115105..115243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1027.3.1prot_H-akashiwo_Contig1027.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1027 111322..115243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1027.3.1

>prot_H-akashiwo_Contig1027.3.1 ID=prot_H-akashiwo_Contig1027.3.1|Name=mRNA_H-akashiwo_Contig1027.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=55bp
DTLYLPSYWHHEVTSTPDEESEINVAVNFWYRNETYFEREEEYLRISRTG
KTKL*
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mRNA from alignment at H-akashiwo_Contig1027:111322..115243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1027.3.1 ID=mRNA_H-akashiwo_Contig1027.3.1|Name=mRNA_H-akashiwo_Contig1027.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3922bp|location=Sequence derived from alignment at H-akashiwo_Contig1027:111322..115243+ (Heterosigma akashiwo CCMP452)
GACACCTTGTACCTCCCATCATACTGGTATGCTATAATAATAGTTTTCCT
GTTTTGTGTGAAATATTTTTTTTGTAGATGATGTCATTAGTTTATAGTAT
AATGAAAATGGTCACGGATTGATTGGAACAAATATATATGTAATCTTCTA
GCAAACAAAGTGCCTCTCCAGCTCCTGACGTTTTGACATGCAGTCATGCC
TTCTTCTTTAAAGAGTCACCAAGTTGGCCAAAACAGGAGATAATAATGAC
CTTATAACATTTCGTTGATTCTTTCTTTCTTTCTTTCTTTCTTTCTCTAT
CCTACTCCAGTGACAGCACTTCACACTGCAGTAAACACACATATCATTTT
TTAAAATTTATATTTTCATGCACAACAACACAATTTTAGCTACACGGGAG
TACACCAGATACCTTCGTGAAAAATAAAAAATCATTAGTTTTGTTCATCT
CCTACTTTTTCCCAGGCGTGCTCAGCTGTCTTCAACAACAACGATACCAT
AGCAACCATTTGGAGGAAGATCAAAATATGGCTTGTAGATAATGACTGTC
AGCTCAGTTGATCTGAGAAGGCACCTCTATGCTCTGAGACTTGAGAATTG
CTCCCCCATGCGCAATTTCACGACCAAGGTCATCCAATGGACAACAAGGC
TTGGCCGTTTGGAAGGCACTCCCTTTTCTGATGGAGCCATCAATCATATG
CATCTTGATGGCGTGCCTGGAGCAACGACTGATGACCCATATCACATGCT
TTTGACCAATCTCAAGAGAGAACTGTATCTGGGTCTTACCAATGCAGATG
GGACACCAAAGGTAACTCCTGCCTATACCATCAGCCAGGTCATTCTGAGA
GAAGCATAGTTAAAGAGGCAAGATGATGAACTTGAGCATGATCTGACTGT
TGCTCAAGCTCTGCTCACTTAAAATAACTTGCCTCCTGCTCCTACCTAGC
TGAAGAAGCCAGCACACCAAGTACCCAAACCTCCAGCTCCAGCGTTGTCC
TTGCAATGCTCAGCCTCGCAATGCCCAGCCTCCTGCTGTTCAGCAGTCCT
CTAGGCAGCCTGAGGACAACCAAACTGATGAGGACGCCAAGAAGGAAGAA
TGCCTTTTCTGCCACAAGCCTGGTCACATCCGCTATACTTGCCGTGCCTA
TGCAACTCATCTTaGGGAATAGCTTCTTGCAATGATAGaGCGCAACCTGG
AAGCTGTGACTAAGGGAGCTACTGCAATGCTATAGCAGGAGCAGAGACTA
ATGACCACTATGACACTGCAGAACCAGAGGAAGAAGCTCCACCTACTAAC
ACAACCCAGGAGCCATTGAAGATCAAGGTTGGTAACCCAACCATTCCTTT
TGAAATTCTACTAGAAGGAGATTGTTATCAGTGGCTAAGCAATCTCGGGG
ATGTTGTAGACTTTCAACAGTTTTGATATTGGATCTACAACTCATCACCA
GTTGACCATGTTTTTCACTCAGCAAAGCTTGCTTTTGCTTGAGCTATATC
GACGTCACACCTTCTATTTTGATTTCATTGACCCTCAACAACGAATATAT
CTGTGAGAGATGACAAATCTTTGGTGCCTCGATAACACCAGTATGTCTTC
TTTTTTGTGTCTGATTGTTCAAGTTTAATGAGGAGATTGCTTCAAGCTTT
CCATAGTCTTCCTGTGAGTCTTCTCTTCATCTGTATTATATATGGTCTCT
ATCAAGATTGAAGTTGATGTATACACATGTCGCAGTCTTCTTTGGTTCAA
CGGTAATTTGAAGTGTTCTTTGTGGTGGTTCTTTTCTTCTTTCTTATTTC
ATGGTTCTTCTTTTTCTCTGTAAGTTTCTCGTGCTCGTGTTTCGTGCTCT
ATTTTTAGTAGTGCAGTGTTACAAATATTCTTCTTGTGCTGAATCACCAC
CACCAGTCATGAGGAAGAGGAATTGCATATTTTTTGTACAACAACGTAAG
GCCTTTTGCCCACCTATTTTTTCTGCAGTACAGACCTCCACATCACGATA
GTCTTTTTTCAACACACTTCTTTAGTCGACTAACATTAAATATCATCTTA
CAAGGCACTGCACTTTGACCAGTTGGGGTGTGCATCTCTTTCTACTTTTT
TCTGGAACAACAAGATTTGTTCATGTTGTGCTCCCACCACTTCTTGCATG
ATTTTTTTTTATGCCAGGCTTGGCATATTGGCCAAAACTAGAATCTTTTG
CAGTAGTGGCCTGGTATACACTGTAGTGTAGCTATTTTCAATAAACTTTT
TCTAAAATCTCTACCACCTCCTACGTCAGCGATGGTGGTGGATGTATTTG
AACTAGTGCTGGATGTGTGCCTTCCATTGAGAACAACTTAATTCAGTCAT
GTATAGAACAGCACAATATTAGATATTATTATATATTACAATTGCAGGGT
GTTGGGTTTAAACAGAGAACCGCTTTCATCATCGGTGAGTATAGCTCCAT
ACTGCCAAGAAGGCAATATGTCAAAGGTTTTTAATCATTAAGTCCATGAC
AACTATGCTGCATTTCGGCTACTAGCCACGGCTGGCGGCTCTCTCCATCC
TCCGCCAGCCTTCATCAGGCTGCCTCTGACTGAAATGAAAACCAATTGAT
GATGGGGAGTGAGATGAGAAGAAGAAAGAATGCACAACAACAAATGAAAA
ACGAAAACAGCAACGGCCAGGGCCATCGCCACCACTAGTCATTGTTGTCT
CATGTACCAAATAATTTATCTTGAATAATATATGTGGTAAGGCACCGGAT
TCCTCTTTAGTATGCCTGAACCCTCACCTATAACAATAACACCACTTTAC
ATAAATGCCTACAAGGCCAAGGCAgGGGCAACTTGATGAACCTGGATGCA
GGGAAATAAGTTGATCCATATTGGGCTGTACTGAACGACCTGATTCTAGA
GGAGCGAGAAGATAGGATGAAGGCTTGCCAGAGGTAGAGAGAAAGGTATG
GTAAGAAGGGGCGCAAGAGTAATGATGGGAGTGCGGgaGGGGGACCTCGA
GGCCAGCAAAGGCGGCTCAGGAAGGGCGAGAGACTGATGAAGAAGCAAGT
GGTGCTCGCCCACTGATAAGGAAGATCCGAAGAACGGGATCTGCATGTGG
ATGGGAGTGGTGTCGTTGGAAAATTGCTGGGGCACCGAGGAGGGTTACTC
TTTCAGTCTTAGGTATGTAAGAAGAGAACAAGTCAAAGAGACTGCTAATA
GGAGACTTTTCCAATATGAACTTGTGTATTAGCGCAAAAATCAAGAATAT
CCAATCAGGTTTAACAAGCCAATCAAATAATGCAGACAGATCTCCAAAAA
ATAGCATCAAAACTGCTGCTTCGCTTGAACTATTCAACAATCAGCAACGG
CTACAGAGACTAGTTTTTACCCCAAGTTCAACGTCCTCCCTTTGAAGAAA
GAAAACTATTCTCCTGCATGTTGTTAGAGACCACATTTTATCGACTACGG
GAGTTTTCAAAACACAACAATGAAGGCAAGAAGAAATAGAGGGTTGTTTT
TGTAGTAGTTGCATTTTTAGGACGTTTGAGTGAATAACAATAATGAAGAC
TTGCGACTGTGACTGTTGCCGTTCTTGGGTGGAACAGAGCTTTGAATGTG
TTCCATAAATGAAGATGGGTAGTGATGTGAAGAAGGGGGATGATAGCCTT
GCGATAGGAATCGTAATATGTAATAATGATGATATAACAATATAACAACA
ACCAGAACGACTGACGACTGACCAGCCCTCACCAACTCACTCAGAAAATT
GTAATTGGCTTCTGCACGCACTCCCTTCCCTAGGCATCATGAGGTGACAT
CAACGCCTGATGAAGAGTCTGAAATAAACGTTGCTGTTAACTTCTGGTAC
CGAAACGAAACATACTTTGAACGAGAAGAGGAATACCTACGTATTAGTCG
AACAGGAAAAACAAAGTTATGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1027:111322..115243+

>mRNA_H-akashiwo_Contig1027.3.1 ID=mRNA_H-akashiwo_Contig1027.3.1|Name=mRNA_H-akashiwo_Contig1027.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=165bp|location=Sequence derived from alignment at H-akashiwo_Contig1027:111322..115243+ (Heterosigma akashiwo CCMP452)
GACACCTTGTACCTCCCATCATACTGGCATCATGAGGTGACATCAACGCC
TGATGAAGAGTCTGAAATAAACGTTGCTGTTAACTTCTGGTACCGAAACG
AAACATACTTTGAACGAGAAGAGGAATACCTACGTATTAGTCGAACAGGA
AAAACAAAGTTATGA
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