mRNA_H-akashiwo_Contig1.249.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.249.1
Unique NamemRNA_H-akashiwo_Contig1.249.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.249.1 vs. uniprot
Match: A0A7S4DGA8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGA8_HETAK)

HSP 1 Score: 419 bits (1077), Expect = 1.620e-146
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 
Query:   88 MELLPSRPDDIDDVIGQQEGSTKKYFMQSWGGMAAQTSTRPASNLKQNNFGAEHYGATNHQFNDISADTGSPLNYSWMSEITDPKGPQQHRRARSAGKAPGATGTAMVGGSGSVGSGGGARGGILLSQLDSDGDLEEGQGSYQAMDGQWNSGASSPKVPAEGLNKVSRPWEWLPAPATKIGGTSAGGSTRKLAVLKPFDTAARAMARVFSFLNK 729
            MELLPSRPDDIDDVIGQQEGSTKKYFMQSWGGMAAQTSTRPASNLKQNNFGAEHYGATNHQFNDISADTGSPLNYSWMSEITDPKGPQQHRRARSAGKAPGATGTAMVGGSGSVGSGGGARGGILLSQLDSDGDLEEGQGSYQAMDGQWNSGASSPKVPAEGLNKVSRPWEWLPAPATKIGGTSAGGSTRKLAVLKPFDTAARAMARVFSFLNK
Sbjct:    1 MELLPSRPDDIDDVIGQQEGSTKKYFMQSWGGMAAQTSTRPASNLKQNNFGAEHYGATNHQFNDISADTGSPLNYSWMSEITDPKGPQQHRRARSAGKAPGATGTAMVGGSGSVGSGGGARGGILLSQLDSDGDLEEGQGSYQAMDGQWNSGASSPKVPAEGLNKVSRPWEWLPAPATKIGGTSAGGSTRKLAVLKPFDTAARAMARVFSFLNK 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DGA8_HETAK1.620e-146100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:10118715..10120049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size732
Hectar predicted targeting categoryother localisation
Exons4
Cds size732
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387031.9264271-CDS-H-akashiwo_Contig1:10118714..101188951681387031.9264271-CDS-H-akashiwo_Contig1:10118714..10118895Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10118715..10118895 +
1681387031.9375799-CDS-H-akashiwo_Contig1:10119032..101191861681387031.9375799-CDS-H-akashiwo_Contig1:10119032..10119186Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10119033..10119186 +
1681387031.9509633-CDS-H-akashiwo_Contig1:10119365..101196001681387031.9509633-CDS-H-akashiwo_Contig1:10119365..10119600Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10119366..10119600 +
1681387031.9671974-CDS-H-akashiwo_Contig1:10119887..101200491681387031.9671974-CDS-H-akashiwo_Contig1:10119887..10120049Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10119888..10120049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.249.1prot_H-akashiwo_Contig1.249.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 10118715..10120049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.249.1

>prot_H-akashiwo_Contig1.249.1 ID=prot_H-akashiwo_Contig1.249.1|Name=mRNA_H-akashiwo_Contig1.249.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=244bp
AKHTLRSTLAWWWLTPPDHFSSIPSIHNNMELLPSRPDDIDDVIGQQEGS
TKKYFMQSWGGMAAQTSTRPASNLKQNNFGAEHYGATNHQFNDISADTGS
PLNYSWMSEITDPKGPQQHRRARSAGKAPGATGTAMVGGSGSVGSGGGAR
GGILLSQLDSDGDLEEGQGSYQAMDGQWNSGASSPKVPAEGLNKVSRPWE
WLPAPATKIGGTSAGGSTRKLAVLKPFDTAARAMARVFSFLNK*
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mRNA from alignment at H-akashiwo_Contig1:10118715..10120049+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.249.1 ID=mRNA_H-akashiwo_Contig1.249.1|Name=mRNA_H-akashiwo_Contig1.249.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1335bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10118715..10120049+ (Heterosigma akashiwo CCMP452)
GCGAAGCATACTCTGCGCTCTACGTTAGCTTGGTGGTGGCTGACTCCGCC
AGACCACTTCAGCTCTATCCCATCGATACACAACAACATGGAGCTGTTAC
CTAGTCGACCAGATGACATTGATGATGTGATTGGCCAACAAGAAGGCTCT
ACAAAAAAGTATTTCATGCAGAGTTGGGGAGGTGATTTTGTTTGTTCCCA
GCTGGGTTTGGGGACGTAGGAATAGTTGTTCCAGTTATAACCCTGAAATT
ACACACAATGTGGTTGCTAGAACAATTGGAAAAAAAAAAATAACGCTCTC
TCTTCAATCATCATGCAGGTATGGCCGCTCAAACTTCCACTAGACCAGCT
TCGAACCTGAAGCAAAACAACTTCGGTGCAGAGCACTATGGGGCCACCAA
CCACCAATTCAACGATATTTCTGCTGATACAGGAAGTCCACTGAATTACA
GTTGGATGAGTGAAATCACTGAGTGAGTATATTGGTGTGAATCAACCGAT
CAAAACACAACCCCACATTCATGAAGTAGACAAGTAGCTGTTTGGTTGGT
TACAGGTCCAAACTGAAACAAACCATGTAGTCTGTAATCTCAAGCCTACC
TGCCTGCTCTCATCCTTCTTACGCACACCGGCACACCGTTCCCGCCCCCA
GCCCCAAAGGCCCACAGCAGCACCGACGCGCACGGAGCGCTGGCAAAGCG
CCTGGCGCGACGGGCACCGCCATGGTCGGCGGCAGCGGGAGCGTCGGCAG
CGGGGGGGGGGCGCGCGGCGGGATCCTGCTGTCCCAGCTGGACTCGGATG
GCGACCTGGAGGAGGGCCAGGGCTCCTACCAGGCCATGGACGGCCAGTGG
AACAGCGGAGCCTCCTCCCCCAAGGTCCCGGCGGAGGTGGGGCCGAGGGG
GGGAGCTGCTGCGGCTCGCCCTTCCTCCTTCTTCAGCTGCACTTCCGCTA
CTCTACTATTGTACTGCCTTTTCTTTTTTCCACGCTCAAACAGCGCACTG
TACAAAATGGTGCCCAAAAGACGATAGCCAAAACTGTCGGTGCTTTGGTA
CTTGCTAATTGTGAGTTGTCATGAGCCTCACATATTCAGCAAGCAAGTTG
TAAAAGCTTGCTGCATTTCCTGTCTGTCCTTTTTTTTTTTTCTTTCTTCT
GCGATCTGCAAATGATTTCTCAGGGCTTGAACAAGGTTTCCCGGCCATGG
GAATGGCTGCCTGCGCCCGCGACCAAAATTGGGGGCACCTCTGCCGGCGG
CAGCACCCGGAAACTGGCTGTGCTCAAACCCTTTGACACTGCCGCCCGGG
CCATGGCGAGGGTCTTTTCATTCCTCAACAAGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:10118715..10120049+

>mRNA_H-akashiwo_Contig1.249.1 ID=mRNA_H-akashiwo_Contig1.249.1|Name=mRNA_H-akashiwo_Contig1.249.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=732bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10118715..10120049+ (Heterosigma akashiwo CCMP452)
GCGAAGCATACTCTGCGCTCTACGTTAGCTTGGTGGTGGCTGACTCCGCC
AGACCACTTCAGCTCTATCCCATCGATACACAACAACATGGAGCTGTTAC
CTAGTCGACCAGATGACATTGATGATGTGATTGGCCAACAAGAAGGCTCT
ACAAAAAAGTATTTCATGCAGAGTTGGGGAGGTATGGCCGCTCAAACTTC
CACTAGACCAGCTTCGAACCTGAAGCAAAACAACTTCGGTGCAGAGCACT
ATGGGGCCACCAACCACCAATTCAACGATATTTCTGCTGATACAGGAAGT
CCACTGAATTACAGTTGGATGAGTGAAATCACTGACCCCAAAGGCCCACA
GCAGCACCGACGCGCACGGAGCGCTGGCAAAGCGCCTGGCGCGACGGGCA
CCGCCATGGTCGGCGGCAGCGGGAGCGTCGGCAGCGGGGGGGGGGCGCGC
GGCGGGATCCTGCTGTCCCAGCTGGACTCGGATGGCGACCTGGAGGAGGG
CCAGGGCTCCTACCAGGCCATGGACGGCCAGTGGAACAGCGGAGCCTCCT
CCCCCAAGGTCCCGGCGGAGGGCTTGAACAAGGTTTCCCGGCCATGGGAA
TGGCTGCCTGCGCCCGCGACCAAAATTGGGGGCACCTCTGCCGGCGGCAG
CACCCGGAAACTGGCTGTGCTCAAACCCTTTGACACTGCCGCCCGGGCCA
TGGCGAGGGTCTTTTCATTCCTCAACAAGTGA
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