mRNA_H-akashiwo_Contig1244.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1244.7.1
Unique NamemRNA_H-akashiwo_Contig1244.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1244.7.1 vs. uniprot
Match: A0A7R9WAW6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WAW6_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.080e-31
Identity = 62/106 (58.49%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   37 PPGSAHAAFAVGGLVMLGGVIGYVKKGSKASVIASGGTAMLMITSGLLITKGNDLEGHGLALATSSLLALGMGARVMKSGKFMPAGLVAVIGAASAAYQAKKTFEW 354
            PPGSAH AF +G L +LGG +GY +KGSKAS+ A      L+I SG++I+  +  EGH LA  TS L+ALGMG R  K+GKFMPAGLVA +GA S AY  KKT EW
Sbjct:    3 PPGSAHPAFGLGALTILGGAVGYFRKGSKASLGAGLLFGSLLIGSGIMISGESQYEGHALASGTSGLMALGMGQRFAKTGKFMPAGLVAAMGAVSLAYHTKKTIEW 108          
BLAST of mRNA_H-akashiwo_Contig1244.7.1 vs. uniprot
Match: A0A7S2EKC3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EKC3_TRICV)

HSP 1 Score: 117 bits (294), Expect = 8.640e-31
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   37 PPGSAHAAFAVGGLVMLGGVIGYVKKGSKASVIASGGTAMLMITSGLLITKGNDLEGHGLALATSSLLALGMGARVMKSGKFMPAGLVAVIGAASAAYQAKKTFEW 354
            PPGSAH AF +GGL +LGG +GY +KGSKAS+ A      ++I SG++I+     EGH LA   S L+ALGMG R ++SGKFMP+GLVA +GAAS AY   K  EW
Sbjct:    3 PPGSAHPAFGLGGLTILGGAVGYFRKGSKASLGAGLAFGSILIGSGVMISGEKQFEGHSLAAGASGLMALGMGQRFVQSGKFMPSGLVAALGAASLAYHTGKALEW 108          
BLAST of mRNA_H-akashiwo_Contig1244.7.1 vs. uniprot
Match: A0A7S0FT96_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FT96_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.560e-29
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   37 PPGSAHAAFAVGGLVMLGGVIGYVKKGSKASVIASGGTAMLMITSGLLITKGNDLEGHGLALATSSLLALGMGARVMKSGKFMPAGLVAVIGAASAAYQAKKTFEW 354
            PPGSAH    +G L ++GG +G+ +KGSKAS+IA  G   L+I SG+LI+  +  EGH LA  TS ++ LGMG R +KSGKFMP+GL+AV+GA S A+   K  EW
Sbjct:    3 PPGSAHPVLGLGLLTIIGGTVGFARKGSKASLIAGVGFGGLLIGSGVLISGEHQYEGHVLASVTSGVMGLGMGQRFLKSGKFMPSGLIAVLGAGSCAFNVMKAMEW 108          
BLAST of mRNA_H-akashiwo_Contig1244.7.1 vs. uniprot
Match: A0A7S2NSL1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSL1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.240e-28
Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 1
Query:   28 MEKPPGSAHAAFAVGGLVMLGGVIGYVKKGSKASVIASGGTAMLMITSGLLITKGNDLEGHGLALATSSLLALGMGARVMKSGKFMPAGLVAVIGAASAAYQAKKTFEW 354
            M   PGSAH  F +G +V  GG+ G+V+KGSKAS+ A      L+I+SG+LI +   LEGH LA +TS+L++LGMG R +K+GKFMP GLVA +GA S AY  KK   W
Sbjct:    1 MSNIPGSAHPCFGLGVVVASGGIAGFVRKGSKASLGAGVLFGGLLISSGMLIVQDKHLEGHALAASTSALMSLGMGQRYIKTGKFMPGGLVAALGAVSVAYHMKKVLIW 109          
BLAST of mRNA_H-akashiwo_Contig1244.7.1 vs. uniprot
Match: A0A1Z5JIY8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIY8_FISSO)

HSP 1 Score: 111 bits (277), Expect = 4.340e-28
Identity = 59/110 (53.64%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   28 MEKPPGSAHAAFAVGGLVMLGGVIGYVKKGSKASVIASGGTAMLMITSGLLITKGNDL-EGHGLALATSSLLALGMGARVMKSGKFMPAGLVAVIGAASAAYQAKKTFEW 354
            M K PGSAH   ++GGLV+ GG++GYVKKGS+ S+I+      L++ SG LI K + + EGH LA  TSS+LAL MG R M +GKFMPAGLVA +G  + AY   K+ EW
Sbjct:    1 MSKIPGSAHVNLSLGGLVLAGGIVGYVKKGSRMSLISGITVGSLLLGSGYLIAKTDQVYEGHVLATTTSSILALAMGQRFMATGKFMPAGLVAALGVGACAYNYHKSKEW 110          
BLAST of mRNA_H-akashiwo_Contig1244.7.1 vs. uniprot
Match: A0A7S2GSC4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GSC4_9STRA)

HSP 1 Score: 110 bits (276), Expect = 9.170e-28
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   28 MEKPPGSAHAAFAVGGLVMLGGVIGYVKKGSKASVIASGGTAMLMITSGLLITKGNDLEGHGLALATSSLLALGMGARVMKSGKFMPAGLVAVIGAASAAYQAKKTFEW 354
            M+  PGSAH  F++GGLV+LGGV G+ +KGSKAS+IA      L++  G +I+   + EGH LA   S L+ALGMG R + + KFMPAG+VAV+GAA  AY   K  EW
Sbjct:   21 MKNIPGSAHMNFSLGGLVILGGVAGFARKGSKASLIAGLTFGSLLLGGGYMISNDKEYEGHALATGASGLMALGMGQRFVSTQKFMPAGMVAVLGAACCAYNFNKAQEW 129          
BLAST of mRNA_H-akashiwo_Contig1244.7.1 vs. uniprot
Match: A0A7S2VBD1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VBD1_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.500e-27
Identity = 57/110 (51.82%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   28 MEKPPGSAHAAFAVGGLVMLGGVIGYVKKGSKASVIASGGTAMLMITSGLLITKGN-DLEGHGLALATSSLLALGMGARVMKSGKFMPAGLVAVIGAASAAYQAKKTFEW 354
            M K PGSAH   ++GGL+M+GG +GY+KK S AS++A  G   L+I S  LI K +   E H LA AT+ +LAL MG R +   KFMPAG+VA++GAA  AY A K  EW
Sbjct:    1 MSKIPGSAHLNLSLGGLIMVGGAMGYIKKRSTASLVAGFGVGSLLIGSSYLIAKTDKQFEAHALATATTGVLALAMGQRYLGGAKFMPAGMVAILGAAGCAYNASKALEW 110          
BLAST of mRNA_H-akashiwo_Contig1244.7.1 vs. uniprot
Match: K0RGB1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RGB1_THAOC)

HSP 1 Score: 106 bits (265), Expect = 2.130e-26
Identity = 53/107 (49.53%), Postives = 70/107 (65.42%), Query Frame = 1
Query:   40 PGSAHAAFAVGGLVMLGGVIGYVKKGSKASVIASGGTAMLMITSGLLITKGNDLEGHGLALATSSLLALGMGARVMKSGKFMPAGLVAVIGAASAAYQAKKTFEWMD 360
            PGSAHAA + G L + GG++GYVKKGSK S+ A      L++ SG++I+     EGH LA  TS  +AL +G+R +K+ KFMPAGL++ I   S AY  KK  EW D
Sbjct:    6 PGSAHAALSFGALTIGGGILGYVKKGSKPSLGAGVVCGSLLVASGMMISGEKQFEGHSLAAGTSGAMALALGSRFIKTEKFMPAGLISAISVTSLAYHTKKALEWKD 112          
BLAST of mRNA_H-akashiwo_Contig1244.7.1 vs. uniprot
Match: A0A6U3W9Y0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3W9Y0_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.600e-26
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   28 MEKPPGSAHAAFAVGGLVMLGGVIGYVKKGSKASVIASGGTAMLMITSGLLITKGNDLEGHGLALATSSLLALGMGARVMKSGKFMPAGLVAVIGAASAAYQAKKTFEW 354
            M K PGSAH  F++GGL++LGG +GY KKGSKAS++A             LI    + EGH LA  T+ L+ALGMG R + + KFMPAG+VAV+GAA  AY   K  EW
Sbjct:   50 MSKIPGSAHMNFSLGGLIILGGAMGYAKKGSKASLLAGLTFGXXXXXXXYLIANDKEYEGHALATGTAGLMALGMGQRFVSTQKFMPAGMVAVLGAACCAYNFNKAREW 158          
BLAST of mRNA_H-akashiwo_Contig1244.7.1 vs. uniprot
Match: A0A7S0QC17_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QC17_9CRYP)

HSP 1 Score: 105 bits (261), Expect = 8.760e-26
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   43 GSAHAAFAVGGLVMLGGVIGYVKKGSKASVIASGGTAMLMITSGLLITKGNDLEGHGLALATSSLLALGMGARVMKSGKFMPAGLVAVIGAASAAYQAKKTFEW 354
            GS H +F +  L++ GG   +V+KGSK S++A  G   L   SGLLI  G   EGHGLAL +S LL  GM  R +K+GKFMPAGLVA +GA SA YQ KK  EW
Sbjct:    9 GSEHMSFTMAALLVSGGTYAFVRKGSKMSLVAGCGVGALFAGSGLLIKAGQHKEGHGLALVSSLLLLGGMAPRAVKTGKFMPAGLVASLGALSALYQGKKVQEW 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1244.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9WAW6_9STRA1.080e-3158.49Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2EKC3_TRICV8.640e-3155.66Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0FT96_9STRA5.560e-2952.83Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2NSL1_9STRA3.240e-2853.21Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5JIY8_FISSO4.340e-2853.64Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2GSC4_9STRA9.170e-2852.29Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2VBD1_9STRA1.500e-2751.82Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
K0RGB1_THAOC2.130e-2649.53Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6U3W9Y0_9STRA4.600e-2651.38Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0QC17_9CRYP8.760e-2653.85Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1244contigH-akashiwo_Contig1244:203039..205341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0RGB1
PFAMsTmemb_14
Model size595
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons4
Evalue2.2e-27
EggNOG OGs2E0W0@1|root,2S89G@2759|Eukaryota,2XHG0@2836|Bacillariophyta
DescriptionTransmembrane proteins 14C
Cds size336
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1244.7.1prot_H-akashiwo_Contig1244.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1244 203066..205109 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387130.4688728-UTR-H-akashiwo_Contig1244:203038..2030651681387130.4688728-UTR-H-akashiwo_Contig1244:203038..203065Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1244 203039..203065 +
1681387130.5203583-UTR-H-akashiwo_Contig1244:205109..2053411681387130.5203583-UTR-H-akashiwo_Contig1244:205109..205341Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1244 205110..205341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387130.4829125-CDS-H-akashiwo_Contig1244:203065..2031491681387130.4829125-CDS-H-akashiwo_Contig1244:203065..203149Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1244 203066..203149 +
1681387130.4931715-CDS-H-akashiwo_Contig1244:203275..2033681681387130.4931715-CDS-H-akashiwo_Contig1244:203275..203368Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1244 203276..203368 +
1681387130.5037968-CDS-H-akashiwo_Contig1244:203951..2040211681387130.5037968-CDS-H-akashiwo_Contig1244:203951..204021Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1244 203952..204021 +
1681387130.512018-CDS-H-akashiwo_Contig1244:205020..2051091681387130.512018-CDS-H-akashiwo_Contig1244:205020..205109Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1244 205021..205109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1244.7.1

>prot_H-akashiwo_Contig1244.7.1 ID=prot_H-akashiwo_Contig1244.7.1|Name=mRNA_H-akashiwo_Contig1244.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=112bp
MEKPPGSAHAAFAVGGLVMLGGVIGYVKKGSKASVIASGGTAMLMITSGL
LITKGNDLEGHGLALATSSLLALGMGARVMKSGKFMPAGLVAVIGAASAA
YQAKKTFEWMD*
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mRNA from alignment at H-akashiwo_Contig1244:203039..205341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1244.7.1 ID=mRNA_H-akashiwo_Contig1244.7.1|Name=mRNA_H-akashiwo_Contig1244.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2303bp|location=Sequence derived from alignment at H-akashiwo_Contig1244:203039..205341+ (Heterosigma akashiwo CCMP452)
CAATATCGTCGAGAACCAATATATATAATGGAGAAGCCACCAGGTTCTGC ACACGCCGCTTTTGCTGTTGGTGGTTTGGTGATGCTGGGGGGTGTGATAG GATACGTCAAAGTGAGCATTTTATGTTGGTGTTCCGGTGGTATTTTGAAA TCCTCTCCGCTTTTTACAGTTTTATCAACCAGTAGTATATCTTTCTTTGA TTTTCACTAACTTTACATTATTCTTTCTTTTCGCCAGAAAGGGTCCAAGG CATCAGTGATTGCGAGCGGTGGAACAGCAATGCTCATGATTACTAGCGGC CTACTCATCACTAAGGGCAACGATTTGGAGGTTGGTTCGTTTGTAAACAT CTTTTTGGCGATTCAAAAGGAGGGGTTGGTTCGCGGTTCAAAGTAATTGG TGTCTTTATAATTTAATTTGTGAAGCTGTCAATGCTGATTTGAAAATGAA TATGAACAAAACAATCAATTGTAGATTTTGTTTTCGTTTTAGCATGACAA AAAATTGCTTGTTGTAACTGTTGCTACCTCTACCCATTATCGTCCATGTG TGTACAATGATACTATCGTGTTCCATGTAACTAGAGGGCGGGGGTGTATC AGCAGTATTGCACAACCATAGAAAACCTGTCCGTAATTAATTTGATGTTT TTCAACGCCCAATTTTCTATAAACTATGATGATTTGCACTTTTCCTCAGT CGTTGTTTGTATGTGCCTGCAGCACCCCCTCTTTCTAAATGTTAATGGAT CTCAGTCAGTCATTCGTGTGTTAAGCAGCAGCATGATGTTGTTTTTCTCC TAATAAAAACTTTAAAGCGCTTGGCACTGGTGCTTCATTCTGCTTTCTTT CCTGTGTATTTCTTCTTGTATTATCTTGTGCTGCTGCAACGAACAAATAC TCACATCAAAAAGGGACATGGCCTTGCTCTTGCAACATCTTCGCTGCTTG CTCTAGGAATGGGAGCAAGAGTGATGAAATCAGGTGGTTTATGGTGTATG CTATCAAAAAATATATCAAGTAACGGTGATGTTAGGGGTACCAGGGTAGA GGTGGTTAGACACGATTGAAATTCGCTGTGAAGTCTATGAAGAGGGCATG ACTCAATGCCGAAATGCCGGCGGGGTCTGGAAAGGTGTACGATTTGCTAG AAGATAACACACTTATTCCAAACCATTGGTAATGGTTTCTAATGATAGTG TAGCATACGTCCAAATAATAATTTAAGAGAAGTAAGGAGCAGAGCCACCA TCACCAGCAGCAGAGATTGCAGATCATCACACGAATAGATTTCATCAGCA TCAAGCAAACAACCCATGTCAAAATAAACAAATGCCATCCACCCCCTTTG CACGAAGACGACTCTTTCTTCAGTGCCATCAAAAGCGAGGCAAAGCCATC AGCCGTTCATTGAACGTACCACCTCCACCTGACTCCTACCCTCCTCACGC TCATTATACACTCACTTCATCATCACAACAACAGCTGCTCTGTGCTATTT TTTGTTCTTGCTTGCTCTCATGTTCAACCTTCATTTTTGCTGTCCCTTTG GATGCTGGCAATAAAAAAGCCAGTCCCAAACATTAGGCACGGCCCAAATA AAACCTGCGAAAGAGCCGAACAGAAGACTACTATCCCAAATGTAATACTC ATCCTAATCTAGAAGTCCTATTAAATACAATTTTGACCCTGATAATAGTA GTAGAACAAACAGCCCTGAATGCAGCGGGTGCCCTCAAAGAACACTGTGT TACTTTTGGGGGGGAAACCAGAAACGGCACTAACCAATGTTGTGTGCTGC AACTGAATAATGAATCGCAGCTAAAACCATGATCTGCATTTCGTGGTGCT GAAGCCATCACCTGCGTTCCTCAATGATTAATGAACCCAGCGCATTTGAA TTCTGGGGCTTAAGAAGTATTTTATGTATCTGCTGTCTGTCCTATACTTC TTTTGAATGCAAACAATGAAAACCAACTGTAGGGAAGTTCATGCCAGCAG GGCTTGTGGCAGTTATTGGTGCAGCCTCGGCAGCGTATCAAGCCAAGAAA ACTTTTGAATGGATGGATTAGAAGTACTGTACTACGTAATTGTTTGTATT AGCAATAGTTTAGGACTATTTCAAGTGGTGGTGGTAGTAGTACTACATCA TCATAATAATATGACAATTTAATATAATACATATTGCAGCTGCGCATGTT ACTATACACTACATGACTACTACTACTACTACTATCTGTCTAAAGGTAAT TCTTGTAGAAGACATCACACCACTATCATGGAAAATCATATTGTTTTTTG TCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1244:203039..205341+

>mRNA_H-akashiwo_Contig1244.7.1 ID=mRNA_H-akashiwo_Contig1244.7.1|Name=mRNA_H-akashiwo_Contig1244.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=336bp|location=Sequence derived from alignment at H-akashiwo_Contig1244:203039..205341+ (Heterosigma akashiwo CCMP452)
ATGGAGAAGCCACCAGGTTCTGCACACGCCGCTTTTGCTGTTGGTGGTTT
GGTGATGCTGGGGGGTGTGATAGGATACGTCAAAAAAGGGTCCAAGGCAT
CAGTGATTGCGAGCGGTGGAACAGCAATGCTCATGATTACTAGCGGCCTA
CTCATCACTAAGGGCAACGATTTGGAGGGACATGGCCTTGCTCTTGCAAC
ATCTTCGCTGCTTGCTCTAGGAATGGGAGCAAGAGTGATGAAATCAGGGA
AGTTCATGCCAGCAGGGCTTGTGGCAGTTATTGGTGCAGCCTCGGCAGCG
TATCAAGCCAAGAAAACTTTTGAATGGATGGATTAG
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