prot_H-akashiwo_Contig993.6.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig993.6.1
Unique Nameprot_H-akashiwo_Contig993.6.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length60
Homology
BLAST of mRNA_H-akashiwo_Contig993.6.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.860e-35
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0
Query:    1 MIIPVRCFTCGKIIGNKWDTYLSLLQADYTEGDALDELGLKRYCCRRMILTHADLIEN 58
            MIIPVRCFTCGK+IGNKW+TYLSLLQADY EGDALDELGLKRYCCRRM+LTH DLIE 
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEK 58          
BLAST of mRNA_H-akashiwo_Contig993.6.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 9.800e-35
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 0
Query:    1 MIIPVRCFTCGKIIGNKWDTYLSLLQADYTEGDALDELGLKRYCCRRMILTHADLIEN 58
            MIIPVRCFTCGK+IGNKW+TYLSLLQADY+EGDALDELGLKRYCCRRM+LTH DLIE 
Sbjct:   33 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEK 90          
BLAST of mRNA_H-akashiwo_Contig993.6.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.790e-34
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 0
Query:    1 MIIPVRCFTCGKIIGNKWDTYLSLLQADYTEGDALDELGLKRYCCRRMILTHADLIEN 58
            MIIPVRCFTCGK++GNKWD+YL LL+ADY+EGDALDELGLKRYCCRRM+LTH DLIE 
Sbjct:    1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEK 58          
BLAST of mRNA_H-akashiwo_Contig993.6.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS)

HSP 1 Score: 118 bits (295), Expect = 9.860e-34
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0
Query:    1 MIIPVRCFTCGKIIGNKWDTYLSLLQADYTEGDALDELGLKRYCCRRMILTHADLIEN 58
            MIIPVRCFTCGK+IGNKW+TYL LLQADY+EGDALDELGL+RYCCRRM+LTH DLIE 
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEK 58          
BLAST of mRNA_H-akashiwo_Contig993.6.1 vs. uniprot
Match: U5CY16_AMBTC (Uncharacterized protein n=11 Tax=Magnoliopsida TaxID=3398 RepID=U5CY16_AMBTC)

HSP 1 Score: 117 bits (294), Expect = 1.700e-33
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0
Query:    1 MIIPVRCFTCGKIIGNKWDTYLSLLQADYTEGDALDELGLKRYCCRRMILTHADLIEN 58
            MIIPVRCFTCGK+IGNKWDTYL LLQADYTEGDALD LGL RYCCRRM++TH DLIE 
Sbjct:    1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEK 58          
BLAST of mRNA_H-akashiwo_Contig993.6.1 vs. uniprot
Match: A0A1U7YTW1_NELNU (DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=29 Tax=Embryophyta TaxID=3193 RepID=A0A1U7YTW1_NELNU)

HSP 1 Score: 117 bits (294), Expect = 1.700e-33
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0
Query:    1 MIIPVRCFTCGKIIGNKWDTYLSLLQADYTEGDALDELGLKRYCCRRMILTHADLIEN 58
            MIIPVRCFTCGK+IGNKWDTYL LLQADYTEGDALD LGL RYCCRRM++TH DLIE 
Sbjct:    1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEK 58          
BLAST of mRNA_H-akashiwo_Contig993.6.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.740e-33
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0
Query:    1 MIIPVRCFTCGKIIGNKWDTYLSLLQADYTEGDALDELGLKRYCCRRMILTHADLIEN 58
            MIIPVRCFTCGK+I NKW+TYLSLLQAD++EGDALDELGLKRYCCRRM+LTH DLIE 
Sbjct:    1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEK 58          
BLAST of mRNA_H-akashiwo_Contig993.6.1 vs. uniprot
Match: A0A7R9WWK7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWK7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.780e-33
Identity = 51/58 (87.93%), Postives = 56/58 (96.55%), Query Frame = 0
Query:    1 MIIPVRCFTCGKIIGNKWDTYLSLLQADYTEGDALDELGLKRYCCRRMILTHADLIEN 58
            MIIPVRCFTCGK+IGNKW+TYLSLLQAD++EGDALDELGLKRYCCRRM+LTH DLIE 
Sbjct:   74 MIIPVRCFTCGKVIGNKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEK 131          
BLAST of mRNA_H-akashiwo_Contig993.6.1 vs. uniprot
Match: A0A833R5F2_9POAL (DNA-directed RNA polymerase subunit 10-like protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A833R5F2_9POAL)

HSP 1 Score: 117 bits (294), Expect = 1.840e-33
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0
Query:    1 MIIPVRCFTCGKIIGNKWDTYLSLLQADYTEGDALDELGLKRYCCRRMILTHADLIEN 58
            MIIPVRCFTCGK+IGNKWDTYL LLQADYTEGDALD LGL RYCCRRM++TH DLIE 
Sbjct:    1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEK 58          
BLAST of mRNA_H-akashiwo_Contig993.6.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN)

HSP 1 Score: 117 bits (294), Expect = 2.010e-33
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 0
Query:    1 MIIPVRCFTCGKIIGNKWDTYLSLLQADYTEGDALDELGLKRYCCRRMILTHADLIEN 58
            MIIPVRCFTCGK+IGNKW++YL LL+ADY+EGDALDELGLKRYCCRRM+LTH DLIE 
Sbjct:    1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEK 58          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig993.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK4_9PHAE3.860e-3589.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1V7Q3_9STRA9.800e-3589.66Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A8J2SAT8_9STRA6.790e-3484.48Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
B8C402_THAPS9.860e-3486.21DNA directed RNA polymerase II subunit, 8.2kDa, rp... [more]
U5CY16_AMBTC1.700e-3386.21Uncharacterized protein n=11 Tax=Magnoliopsida Tax... [more]
A0A1U7YTW1_NELNU1.700e-3386.21DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1E7EXD3_9STRA1.740e-3386.21DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7R9WWK7_9STRA1.780e-3387.93Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A833R5F2_9POAL1.840e-3386.21DNA-directed RNA polymerase subunit 10-like protei... [more]
F0YLY9_AURAN2.010e-3384.48Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000268DNA-directed RNA polymerase subunit RPABC5/Rpb10PFAMPF01194RNA_pol_Ncoord: 2..58
e-value: 1.8E-31
score: 108.1
IPR000268DNA-directed RNA polymerase subunit RPABC5/Rpb10PIRSFPIRSF005653RpoN_RPB10coord: 1..59
e-value: 7.4E-30
score: 100.3
IPR000268DNA-directed RNA polymerase subunit RPABC5/Rpb10PANTHERPTHR23431DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBERcoord: 1..58
NoneNo IPR availableGENE3D1.10.10.60coord: 1..59
e-value: 1.0E-34
score: 120.4
NoneNo IPR availablePANTHERPTHR23431:SF6SUBFAMILY NOT NAMEDcoord: 1..58
IPR020789RNA polymerases, subunit N, zinc binding sitePROSITEPS01112RNA_POL_N_8KDcoord: 2..11
IPR023580RNA polymerase subunit RPB10SUPERFAMILY46924RNA polymerase subunit RPB10coord: 1..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig993contigH-akashiwo_Contig993:232561..233029 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig993.6.1mRNA_H-akashiwo_Contig993.6.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig993 212783..233149 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig993.6.1 ID=prot_H-akashiwo_Contig993.6.1|Name=mRNA_H-akashiwo_Contig993.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
MIIPVRCFTCGKIIGNKWDTYLSLLQADYTEGDALDELGLKRYCCRRMIL
THADLIENF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000268RPABC5/Rpb10
IPR020789RNA_pol_suN_Zn-BS
IPR023580RNA_pol_su_RPB10