mRNA_H-akashiwo_Contig979.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig979.3.1
Unique NamemRNA_H-akashiwo_Contig979.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig979.3.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 606 bits (1562), Expect = 1.600e-216
Identity = 292/340 (85.88%), Postives = 320/340 (94.12%), Query Frame = 1
Query:  187 MELHDHLLSLGFQRSGHESCLYTRRDGGNELMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRDKFFYLSQTSFIKEALTKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFAVHKLQRTQNDPEPKHFEAAERAFCYLKGTQSESLRLGGDLVLRAFSDLDFCSDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRASVKDIMWLRHLLADLGCPQQEPTPVVEDNSAYIEWANDVVISRKNRHFHVSYHLDKEQVSLGTIRVFFIKTHDQVADIFTKALNAENF 1206
            MELHDHL SLGF+RSGHESCLY  RDGGNELM+AVYVDDLV+SGSS A+VS+FKQSLASKY LTDQGELTQILGIKVVRDKR+K F+LSQTSFIK+AL KFGLDYLPAC TP+DHTVDLTPTPGFKAELSDAN+YRSMVGTLAWVANWTRPELAF VHKLQRTQ +PEPKHFEA +RAF YLKGTQSESLRLGGDLVLRAFSD DFC+DR+DGKSVTGY+LFLGDAPIVWSSKLQGAVTTSTVEAEYLALR++VKDIMWLR LL ++GCPQ EPTPVVEDNSA +EWAND++++++NRHFHVSYHL KEQVSLGTIR+F+IKTHDQVADI TKALNA NF
Sbjct:    1 MELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANF 340          
BLAST of mRNA_H-akashiwo_Contig979.3.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 362 bits (930), Expect = 8.600e-122
Identity = 175/203 (86.21%), Postives = 189/203 (93.10%), Query Frame = 1
Query:  124 HKARLLNKALYGLKQSPRVWYMELHDHLLSLGFQRSGHESCLYTRRDGGNELMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRDKFFYLSQTSFIKEALTKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFAVHKLQRTQNDPEPKHFEAAERAFCYL 732
            +K   LNKALYGLKQSPRVWYMELHDHL SLGF+RSGHESCLY  RDGGNELM+AVYVDDLV+SGSS A+VS+FKQSLASKY+LTDQGELTQILGIKVVRDKR+K F+LSQTSFIK+AL KFGLDYLPAC TP+DHTVDLTPTPGFKAELSDAN+YRSMVGTLAWVANWTRPELAF VHKLQRTQ +PEPKHFEA +RAF YL
Sbjct:   66 NKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig979.3.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 304 bits (779), Expect = 4.960e-91
Identity = 154/365 (42.19%), Postives = 231/365 (63.29%), Query Frame = 1
Query:  118 VKHKARLLNKALYGLKQSPRVWYMELHDHLLSLGFQRSGHESCLYTRRDG-GNELMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRDKFFYLSQTSFIKEALTKFGLDYLPACATPMDHTVDLTPTPGFKAELS--DANMYRSMVGTLAWVANWTRPELAFAVHKLQRTQNDPEPKHFEAAERAFCYLKGTQSESLRLGGDLVLRAFSDLDFCSDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRASVKDIMWLRHLLADLGCPQQEPTPVVEDNSAYIEWANDVVISRKNRHFHVSYHLDKEQVSLGTIRVFFIKTHDQVADIFTKALNAEN 1203
            ++HK   L K+LYGLKQ+P+ WY  L+  LL  G+ R+G++SC+Y++    G + +I+VYVDD+V++ S  + +S  K++++  Y+++D GE+  ILGIKV RD+  +   LSQ SFI+EA  KF +        P++  +D+         LS  +A  +RS+VGT+ W+A WT PE+A+++H L +    P      A+     YL  T+ + + LGG L L A++D DFCS+R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++LR +V D+MWL+ LL  LG  +Q   P+ EDN A I WAND  +S+  RH HVSYH  KE V    I V ++ T  Q+AD+FTK L+  N
Sbjct:  622 MEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGY-KQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNN 985          
BLAST of mRNA_H-akashiwo_Contig979.3.1 vs. uniprot
Match: UPI00098DD449 (uncharacterized protein LOC109818890 n=1 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098DD449)

HSP 1 Score: 243 bits (621), Expect = 1.500e-73
Identity = 133/362 (36.74%), Postives = 205/362 (56.63%), Query Frame = 1
Query:  127 KARLLNKALYGLKQSPRVWYMELHDHLLSLGFQRSGHESCLYTRRDGGNELMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRDKFFYLSQTSFIKEALTKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFAVHKLQRTQNDPEPKHFEAAERAFCYLKGTQSESLRLGG--DLVLRAFSDLDFCSDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRASVKDIMWLRHLLADLGCPQQEPTPVVEDNSAYIEWANDVVISRKNRHFHVSYHLDKEQVSLGTIRVFFIKTHDQVADIFTKALNAENF 1206
            K   L K LYGLKQ+ R W + +  +     F +  +E  LY +  G + L++ +YVDDL+ +G++P++  +FK+ +  ++++TD G +   LGI+V +     F  ++Q S+ K+ L KF LD      TPM+  + L+     + E  D  +Y+S+VG+L ++   TRP++ +AV  + R    P   H + A+R   Y+KGT S  L      D  L  +SD D+  D  D KS +G+V ++GD    W SK Q  VT ST EAEY+A  + V   +WLR+LL +L  PQ EPT +  DN + I  A + V   +++H H  YH  +E +S   +++ ++KTHDQVADIFTK L  E F
Sbjct:   17 KVLRLKKVLYGLKQALRAWNVRIDKYFKEANFIKCPYEHALYIKAQGKDILIVCLYVDDLIFTGNNPSMFEEFKKDMTKEFEMTDMGLMAYYLGIEVKQGNEGIF--ITQESYAKDLLKKFKLDDANPVGTPMECGIKLSKDE--EGEKVDPTLYKSLVGSLRYLT-CTRPDILYAVGVVSRYMEAPTTTHLKTAKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVADIFTKPLKKEVF 373          
BLAST of mRNA_H-akashiwo_Contig979.3.1 vs. uniprot
Match: A0A314KJ27_NICAT (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A314KJ27_NICAT)

HSP 1 Score: 241 bits (615), Expect = 1.610e-72
Identity = 135/362 (37.29%), Postives = 207/362 (57.18%), Query Frame = 1
Query:  127 KARLLNKALYGLKQSPRVWYMELHDHLLSLGFQRSGHESCLYTRRDGGNELMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRDKFFYLSQTSFIKEALTKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFAVHKLQRTQNDPEPKHFEAAERAFCYLKGTQSESLRL--GGDLVLRAFSDLDFCSDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRASVKDIMWLRHLLADLGCPQQEPTPVVEDNSAYIEWANDVVISRKNRHFHVSYHLDKEQVSLGTIRVFFIKTHDQVADIFTKALNAENF 1206
            K   L+KALYGLKQ+PR WY  + D+LL L F++S  ES LY ++  G+ L++++YVDDL+++GSS  L+ DFKQ +   +++TD G +T  LG+++  +K + F  + Q  + KE L KFG++   A  TPM+    L    G  AE  D + +RS++G L ++   TRP++ +AV  L R  + P   H +AA+R   Y+KGT +  ++     ++ L  +SD D+     D KS +GY   LG     W SK Q  V  ST +AE++A  A+V   +WLR +L DL    ++ T V  DN A I  +++ V   K +HF++     +E    G I + + KT ++VADIF K L    F
Sbjct:   32 KVYRLHKALYGLKQAPRAWYSRIDDYLLGLNFEKSLSESTLYVKQHSGDILVVSLYVDDLLITGSSTKLIDDFKQDMMQAFEMTDLGLVTYFLGMEIKPEKDEVF--ICQNKYAKEILKKFGMENCKAMNTPMNQKEKLRKDDG--AEKVDESYFRSIIGCLMYLTA-TRPDILYAVSVLSRFMHCPSEVHLKAAKRVVRYIKGTINYGVKFHRSRNMELFGYSDSDWGGSLDDMKSTSGYCFSLGSRMFSWCSKKQDTVAQSTAQAEFVAATAAVNQALWLREILVDLHMEPRKSTEVFVDNQAAIAISHNPVFHGKTKHFNIKLFFLREVQKDGAITLVYCKTEEEVADIFKKPLPVSKF 388          
BLAST of mRNA_H-akashiwo_Contig979.3.1 vs. uniprot
Match: A0A182GHD8_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GHD8_AEDAL)

HSP 1 Score: 239 bits (611), Expect = 6.350e-72
Identity = 130/356 (36.52%), Postives = 210/356 (58.99%), Query Frame = 1
Query:  139 LNKALYGLKQSPRVWYMELHDHLLSLGFQRSGHESCLYTRRDGGNELMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRDKFFYLSQTSFIKEALTKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFAVHKLQRTQNDPEPKHFEAAERAFCYLKGTQSESL---RLGGDLVLRAFSDLDFCSDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRASVKDIMWLRHLLADLGCPQQEPTPVVEDNSAYIEWANDVVISRKNRHFHVSYHLDKEQVSLGTIRVFFIKTHDQVADIFTKALNA 1197
            L K+LYGLKQSPR W  + ++ LL LGF RS H+ CLYTR   G+E+ + +YVDDL++ G  P  +   KQ L + + +TD GE+T  LG+++  D R     LSQ + +++ LT+F +       TPM+  + L      +A    A+ YR ++G+L +V   TRP++ ++V  L R Q  P  +H+++ +R   ++KGT++  L   ++     L  + D D+ SD  D KSV+G+  F+    + WSSK Q  V TS+ EAEY+AL ++V + +WL  +L DL      P  + EDN   I  A +   S++++H  V +H  ++ +S G +R+ +++T DQ+AD+FTK ++A
Sbjct:   34 LLKSLYGLKQSPRCWNEKFNEKLLKLGFVRSRHDYCLYTRIQDGDEIYVVLYVDDLLICGRKPETIVKLKQQLTAMFAMTDCGEVTHFLGMRLDYDVRRGRMRLSQEANVEKLLTRFEMVDCNPVKTPMEKGLQLA-----RAGDPTAHPYRELLGSLMYVMLCTRPDICYSVGFLGRFQQKPTTQHWQSLKRVVRFIKGTKARCLEYKQVRSAKPLVGYVDADWASDIEDRKSVSGFAFFVFGNLVSWSSKKQTTVATSSSEAEYIALSSAVSEAVWLSGILDDLKLKNSSPVTIYEDNQGCIGMAKNCE-SKRSKHIDVKHHFVRDHISNGNVRIEYVRTEDQLADLFTKPMDA 383          
BLAST of mRNA_H-akashiwo_Contig979.3.1 vs. uniprot
Match: A0A540M9F0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540M9F0_MALBA)

HSP 1 Score: 243 bits (619), Expect = 1.090e-71
Identity = 137/364 (37.64%), Postives = 199/364 (54.67%), Query Frame = 1
Query:  124 HKARLLNKALYGLKQSPRVWYMELHDHLLSLGFQRSGHESCLYTRRDG-GNELMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRDKFFYLSQTSFIKEALTKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFAVHKLQRTQNDPEPKHFEAAERAFCYLKGTQSESLRL--GGDLVLRAFSDLDFCSDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRASVKDIMWLRHLLADLGCPQQEPTPVVEDNSAYIEWANDVVISRKNRHFHVSYHLDKEQVSLGTIRVFFIKTHDQVADIFTKALNAENF 1206
            HK   L KALYGLKQ+PR WY E+  +L S  F RS  E+ LYT+ D  G  L++++YVDD+V +GSS  L+S+FK  +  KY+++D G L   LG+ +++ +   F +  Q+ + K  L KFGL+     + P+     L    G  +E +D  MYR +VG+L ++   TRP+L +A   L R  N P  KHF  A R   Y++GT S  +      D +L  F D D+     D +S +GY    G     W+S  Q  V  ST EAEY++   +    +WLR +L D G  Q + TP+  DN + I    + V  +K RH +  +H  +E +  G I V F ++ +Q+ADIFTKAL  E F
Sbjct:  143 HKVYKLRKALYGLKQAPRAWYSEIDAYLTSCNFIRSTSEATLYTKSDEEGGILIVSIYVDDIVYTGSSKTLLSEFKMEMMQKYEMSDLGLLHHFLGMGILQTENGVFIH--QSKYAKSLLVKFGLEDCKPVSIPLPTGEKLKKVDG--SEFADETMYRKIVGSLLYLTA-TRPDLMYAASLLSRFMNGPTKKHFGIARRVLRYVQGTLSYGIEYTKDSDAILVGFCDADWAGSEDDCRSTSGYAFSFGSGVFSWASVKQNTVALSTAEAEYVSAAEATAQAIWLRFVLDDFGEMQADATPLFCDNMSAISMVKNPVFHQKTRHINRKFHFIREAMQEGVINVKFCRSEEQLADIFTKALPRERF 501          
BLAST of mRNA_H-akashiwo_Contig979.3.1 vs. uniprot
Match: A0A438J1J0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J1J0_VITVI)

HSP 1 Score: 254 bits (648), Expect = 1.220e-71
Identity = 142/365 (38.90%), Postives = 209/365 (57.26%), Query Frame = 1
Query:  121 KHKARLLNKALYGLKQSPRVWYMELHDHLLSLGFQRSGHESCLYTRRDGGNELMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRDKFFYLSQTSFIKEALTKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFAVHKLQRTQNDPEPKHFEAAERAFCYLKGTQSESLRLG--GDLVLRAFSDLDFCSDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRASVKDIMWLRHLLADLGCPQQEPTPVVEDNSAYIEWANDVVISRKNRHFHVS-YHLDKEQVSLGTIRVFFIKTHDQVADIFTKALNAENF 1206
            + K  LL KALYGLKQ+PR WY  + +HL SLGF +S  E+ LY +    N ++++VYVDDL+V+GS+  LV +FK  +   +++TD G ++  LG++V +D    F  +SQ  + KE L KF +D     +TPM+     +   G   E  D + YRS++G L ++   TRP++ F+V  L R  +     HF+AA+R   Y+KGT +  ++     +  L  +SD D+     D +S TG+    G     WSSK Q  +  ST EAEY+A  A+V   +W+R +LADL   Q EPT +  DN A I  +ND V   K +HF +  YHL +EQ   G +++ + KT DQ+AD+ TKAL    F
Sbjct:  922 EEKVYLLKKALYGLKQAPRAWYSRIDEHLQSLGFVKSPSEATLYVKGTDANLIVVSVYVDDLLVTGSNEKLVKEFKAEMLKVFEMTDLGLMSYFLGMEVKQDHDGVF--ISQKKYAKEILNKFHMDDCKRTSTPMNQKEKFSKDDG--TEKVDESQYRSLIGCLMYLTA-TRPDIMFSVSLLSRFMHCASEVHFQAAKRIVRYIKGTTNYGIKYSYYQNFKLHGYSDSDWAGSIDDMRSTTGFCFNFGSGIFSWSSKKQDVIAQSTAEAEYVAANATVNQAIWIRKILADLHMKQNEPTQIHVDNQAAIAISNDSVFHGKTKHFKIKLYHLREEQKD-GEVKLLYCKTEDQIADVLTKALPKARF 1280          
BLAST of mRNA_H-akashiwo_Contig979.3.1 vs. uniprot
Match: A0A540M4E2_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540M4E2_MALBA)

HSP 1 Score: 242 bits (618), Expect = 1.530e-71
Identity = 141/404 (34.90%), Postives = 215/404 (53.22%), Query Frame = 1
Query:    4 LNSITGKNTYTLVDRPPNANVIGTCWVLSKKFDADGHLVKHKARLLNKALYGLKQSPRVWYMELHDHLLSLGFQRSGHESCLYTRRDG-GNELMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRDKFFYLSQTSFIKEALTKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFAVHKLQRTQNDPEPKHFEAAERAFCYLKGTQSESLRL--GGDLVLRAFSDLDFCSDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRASVKDIMWLRHLLADLGCPQQEPTPVVEDNSAYIEWANDVVISRKNRHFHVSYHLDKEQVSLGTIRVFFIKTHDQVADIFTKALNAENF 1206
            LN +  +  YT  ++P    V   C               HK   L KALYGLKQ+PR WY E+  +L +  F+RS  E+ LYTR D  GN +++++YVDD+V +G S  L+S+FK+ +  KY++TD G L   LG+ V++ +R  F +  Q+ + K  L KFGL+   +   P+     L    G  +EL+D  ++R +VG+L ++   TRP++ +A   L R  + P  KH   A+R   Y++GT S  +      D VL  F D D+     D +S +GY    G     W+S  Q  V  ST EAEY++   +    +WLR +L D G  Q + TP+  DN + I    + V  ++ RH +  YH  +E +  G+I V + ++ +Q+ADIFTKAL  + F
Sbjct:  120 LNGVLEEEVYT--EQPEGFEVKNAC---------------HKVYKLKKALYGLKQAPRAWYSEIDTYLTNCNFKRSISEATLYTRTDDEGNMIIVSIYVDDIVYTGGSNTLLSEFKRDMMQKYEMTDLGLLHHFLGMGVLQTERGVFIH--QSKYAKSLLVKFGLEDCKSVTIPLPTGEKLKKVDG--SELADEGLFRKIVGSLLYLTA-TRPDIMYAASLLSRFMHGPTKKHMGIAKRVLRYIQGTLSYGIEFTRDKDAVLIGFCDSDWAGSEDDSRSTSGYAFSFGSGIFSWASVKQNTVALSTAEAEYVSAAGATAQAIWLRFVLDDFGELQADATPLFCDNMSAISMVKNPVFHQRTRHINRKYHFIREALQQGSIDVKYCRSEEQLADIFTKALPKDRF 501          
BLAST of mRNA_H-akashiwo_Contig979.3.1 vs. uniprot
Match: A0A438ER93_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ER93_VITVI)

HSP 1 Score: 251 bits (642), Expect = 5.340e-71
Identity = 141/365 (38.63%), Postives = 208/365 (56.99%), Query Frame = 1
Query:  121 KHKARLLNKALYGLKQSPRVWYMELHDHLLSLGFQRSGHESCLYTRRDGGNELMIAVYVDDLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRDKFFYLSQTSFIKEALTKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFAVHKLQRTQNDPEPKHFEAAERAFCYLKGTQSESLRLG--GDLVLRAFSDLDFCSDRIDGKSVTGYVLFLGDAPIVWSSKLQGAVTTSTVEAEYLALRASVKDIMWLRHLLADLGCPQQEPTPVVEDNSAYIEWANDVVISRKNRHFHVS-YHLDKEQVSLGTIRVFFIKTHDQVADIFTKALNAENF 1206
            + K  LL KALYGLKQ+PR WY  + +HL SLGF +S  E+ LY +    N ++++VYVDDL+V+GS+  LV +FK  +   +++TD G ++  LG++V +D    F  +SQ  + KE L KF +D     +TPM+     +   G   E  D + YRS++G L ++   TRP++ F+V  L R  +     H +AA+R   Y+KGT +  ++     +  L  +SD D+     D +S TG+    G     WSSK Q  +  ST EAEY+A  A+V   +W+R +LADL   Q EPT +  DN A I  +ND V   K +HF +  YHL +EQ   G +++ + KT DQ+AD+ TKAL    F
Sbjct:  811 EEKVYLLKKALYGLKQAPRAWYSRIDEHLQSLGFVKSPSEATLYVKGTDANLIVVSVYVDDLLVTGSNEKLVKEFKAEMLKVFEMTDLGLMSYFLGMEVKQDHDGVF--ISQKKYAKEILNKFHMDDCKRTSTPMNQKEKFSKDDG--TEKVDESQYRSLIGCLMYLTA-TRPDIMFSVSLLSRFMHCASEVHLQAAKRIVRYIKGTTNYGIKYSYCQNFKLHGYSDSDWAGSIDDMRSTTGFCFNFGSGIFSWSSKKQDVIAQSTAEAEYVAANATVNQAIWIRKILADLHMKQNEPTQIHVDNQAAIAISNDSVFHGKTKHFKIKLYHLREEQKD-GEVKLLYCKTEDQIADVLTKALPKARF 1169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig979.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK1.600e-21685.88Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK8.600e-12286.21Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK4.960e-9142.19Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI00098DD4491.500e-7336.74uncharacterized protein LOC109818890 n=1 Tax=Cajan... [more]
A0A314KJ27_NICAT1.610e-7237.29Retrovirus-related pol polyprotein from transposon... [more]
A0A182GHD8_AEDAL6.350e-7236.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A540M9F0_MALBA1.090e-7137.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438J1J0_VITVI1.220e-7138.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A540M4E2_MALBA1.530e-7134.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438ER93_VITVI5.340e-7138.63Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig979contigH-akashiwo_Contig979:216646..218082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo132654
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1206
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.13e-65
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size1206
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388065.2394724-CDS-H-akashiwo_Contig979:216645..2177131681388065.2394724-CDS-H-akashiwo_Contig979:216645..217713Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig979 216646..217713 -
1681388065.2521875-CDS-H-akashiwo_Contig979:217944..2180821681388065.2521875-CDS-H-akashiwo_Contig979:217944..218082Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig979 217945..218082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig979.3.1prot_H-akashiwo_Contig979.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig979 216646..218082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig979.3.1

>prot_H-akashiwo_Contig979.3.1 ID=prot_H-akashiwo_Contig979.3.1|Name=mRNA_H-akashiwo_Contig979.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=402bp
ELNSITGKNTYTLVDRPPNANVIGTCWVLSKKFDADGHLVKHKARLLNKA
LYGLKQSPRVWYMELHDHLLSLGFQRSGHESCLYTRRDGGNELMIAVYVD
DLVVSGSSPALVSDFKQSLASKYDLTDQGELTQILGIKVVRDKRDKFFYL
SQTSFIKEALTKFGLDYLPACATPMDHTVDLTPTPGFKAELSDANMYRSM
VGTLAWVANWTRPELAFAVHKLQRTQNDPEPKHFEAAERAFCYLKGTQSE
SLRLGGDLVLRAFSDLDFCSDRIDGKSVTGYVLFLGDAPIVWSSKLQGAV
TTSTVEAEYLALRASVKDIMWLRHLLADLGCPQQEPTPVVEDNSAYIEWA
NDVVISRKNRHFHVSYHLDKEQVSLGTIRVFFIKTHDQVADIFTKALNAE
NF
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mRNA from alignment at H-akashiwo_Contig979:216646..218082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig979.3.1 ID=mRNA_H-akashiwo_Contig979.3.1|Name=mRNA_H-akashiwo_Contig979.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1437bp|location=Sequence derived from alignment at H-akashiwo_Contig979:216646..218082- (Heterosigma akashiwo CCMP452)
GAGCTGAACAGTATCACTGGCAAGAACACCTACACTCTGGTCGATCGCCC TCCCAACGCGAATGTTATTGGAACTTGCTGGGTGCTGTCAAAAAAATTCG ACGCCGATGGTCACTTGGTTAAGCACAAAGCCAGATTGGTTACCCAAGGG TACACTCAGGAGTTTGGTGTTGACTTTCAGCAGACCTACTCGCCCGTTGT GAACGCGGCCAGTCTTAGACTGCTTCTGGCTATCTCCGCGAACAAGGGCT ATGCAGTTGACTCTCTGGACATTAGTACAGCCTTTCTGAATGGGTTTATG ACCGACGATGTTTACGTGCGCCAGCCGCCGGGTTATGTTGATCCCGAGCA TCCCAATGAAGTTTGGAAGCTGAACAAAGCGCTATACGGTCTCAAGCAAA GCCCAAGAGTGTGGTATATGGAGTTGCATGATCATCTCTTGTCTCTGGGC TTTCAGCGTAGCGGGCATGAGTCCTGCTTGTATACCCGTCGCGATGGGGG CAATGAGTTGATGATAGCTGTGTACGTTGATGATTTGGTGGTTAGCGGCA GCTCTCCCGCTCTCGTCTCTGATTTCAAGCAGTCTCTTGCGTCCAAGTAC GATCTCACCGATCAGGGGGAGCTTACTCAAATCCTCGGCATCAAGGTCGT TCGGGACAAGCGCGACAAGTTCTTCTATCTCTCCCAAACCTCCTTCATTA AAGAGGCGCTAACCAAGTTCGGGCTCGATTATCTGCCCGCGTGCGCAACA CCTATGGACCACACTGTGGATCTAACGCCTACCCCTGGTTTCAAGGCCGA GCTCTCTGACGCGAATATGTACAGGTCTATGGTTGGTACGTTAGCCTGGG TTGCGAACTGGACGAGGCCGGAGCTAGCCTTTGCAGTCCACAAGCTTCAG CGCACTCAGAATGACCCAGAACCCAAGCATTTCGAGGCGGCCGAGCGTGC ATTTTGCTATCTTAAGGGTACTCAATCTGAGTCGTTGCGTTTGGGTGGTG ATCTGGTGCTACGTGCGTTCTCTGATTTGGATTTCTGCTCTGACCGTATT GATGGCAAGTCAGTTACAGGCTATGTTCTTTTTCTGGGTGACGCGCCTAT CGTTTGGTCCTCAAAGCTTCAAGGGGCAGTCACTACCTCCACAGTAGAAG CAGAGTATCTCGCGCTTCGAGCATCGGTCAAAGACATCATGTGGCTTCGC CATCTTCTCGCTGATCTTGGGTGCCCTCAACAGGAGCCTACTCCTGTTGT GGAGGACAATAGTGCCTACATTGAGTGGGCAAATGACGTGGTGATTTCCA GAAAAAATAGGCACTTCCATGTGTCCTATCACCTTGATAAGGAGCAGGTG AGCCTTGGGACTATCAGAGTGTTCTTCATTAAGACTCATGACCAGGTGGC TGATATTTTCACTAAAGCTCTCAATGCAGAAAATTTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig979:216646..218082-

>mRNA_H-akashiwo_Contig979.3.1 ID=mRNA_H-akashiwo_Contig979.3.1|Name=mRNA_H-akashiwo_Contig979.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1206bp|location=Sequence derived from alignment at H-akashiwo_Contig979:216646..218082- (Heterosigma akashiwo CCMP452)
GAGCTGAACAGTATCACTGGCAAGAACACCTACACTCTGGTCGATCGCCC
TCCCAACGCGAATGTTATTGGAACTTGCTGGGTGCTGTCAAAAAAATTCG
ACGCCGATGGTCACTTGGTTAAGCACAAAGCCAGATTGCTGAACAAAGCG
CTATACGGTCTCAAGCAAAGCCCAAGAGTGTGGTATATGGAGTTGCATGA
TCATCTCTTGTCTCTGGGCTTTCAGCGTAGCGGGCATGAGTCCTGCTTGT
ATACCCGTCGCGATGGGGGCAATGAGTTGATGATAGCTGTGTACGTTGAT
GATTTGGTGGTTAGCGGCAGCTCTCCCGCTCTCGTCTCTGATTTCAAGCA
GTCTCTTGCGTCCAAGTACGATCTCACCGATCAGGGGGAGCTTACTCAAA
TCCTCGGCATCAAGGTCGTTCGGGACAAGCGCGACAAGTTCTTCTATCTC
TCCCAAACCTCCTTCATTAAAGAGGCGCTAACCAAGTTCGGGCTCGATTA
TCTGCCCGCGTGCGCAACACCTATGGACCACACTGTGGATCTAACGCCTA
CCCCTGGTTTCAAGGCCGAGCTCTCTGACGCGAATATGTACAGGTCTATG
GTTGGTACGTTAGCCTGGGTTGCGAACTGGACGAGGCCGGAGCTAGCCTT
TGCAGTCCACAAGCTTCAGCGCACTCAGAATGACCCAGAACCCAAGCATT
TCGAGGCGGCCGAGCGTGCATTTTGCTATCTTAAGGGTACTCAATCTGAG
TCGTTGCGTTTGGGTGGTGATCTGGTGCTACGTGCGTTCTCTGATTTGGA
TTTCTGCTCTGACCGTATTGATGGCAAGTCAGTTACAGGCTATGTTCTTT
TTCTGGGTGACGCGCCTATCGTTTGGTCCTCAAAGCTTCAAGGGGCAGTC
ACTACCTCCACAGTAGAAGCAGAGTATCTCGCGCTTCGAGCATCGGTCAA
AGACATCATGTGGCTTCGCCATCTTCTCGCTGATCTTGGGTGCCCTCAAC
AGGAGCCTACTCCTGTTGTGGAGGACAATAGTGCCTACATTGAGTGGGCA
AATGACGTGGTGATTTCCAGAAAAAATAGGCACTTCCATGTGTCCTATCA
CCTTGATAAGGAGCAGGTGAGCCTTGGGACTATCAGAGTGTTCTTCATTA
AGACTCATGACCAGGTGGCTGATATTTTCACTAAAGCTCTCAATGCAGAA
AATTTT
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