mRNA_H-akashiwo_Contig968.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig968.3.1
Unique NamemRNA_H-akashiwo_Contig968.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig968.3.1 vs. uniprot
Match: A0A8J2PCB9_9HEXA (DNA-directed DNA polymerase n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2PCB9_9HEXA)

HSP 1 Score: 95.1 bits (235), Expect = 1.250e-20
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 2 
Query:   29 NIKLVDSYNFVGSPLASFTKIFSLNPDLAKGYFPHCFARVEHMTYEGPIPSLDWYDADMMKSEARDQFLTWHEEQVEEQVTFNFMDECLRYCS 307
            N++++DS+NF+ SPLA F K F L  +L KGYFPH F   E+  Y G IP+  +Y  D MK+EAR  FL WH+++ EE   F+   E  +YCS
Sbjct:  928 NLRIIDSHNFIASPLAEFPKTFGLT-ELKKGYFPHLFNTKENENYVGDIPAAHYYCPDQMKAEARKDFLNWHKQKAEEHYQFDMKSELFQYCS 1019
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BLAST of mRNA_H-akashiwo_Contig968.3.1 vs. uniprot
Match: UPI0013F2A978 (LOW QUALITY PROTEIN: uncharacterized protein LOC116853627 n=1 Tax=Odontomachus brunneus TaxID=486640 RepID=UPI0013F2A978)

HSP 1 Score: 91.7 bits (226), Expect = 1.960e-19
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 2 
Query:   23 INNIKLVDSYNFVGSPLASFTKIFSLNPDLAKGYFPHCFARVEHMTYEGPIPSLDWYDADMMKSEARDQFLTWHEEQVEEQVTFNFMDECLRYC 304
            +   K +DS N++   L++  K F L   +AKG FP  F  +E+  Y GP+P +D+Y  D MKS+ R+QFLTWH E   +   FNF  E +RYC
Sbjct:  137 VGRTKFLDSANYMPMQLSTLPKAFGLKDSVAKGVFPQLFNTIENQNYIGPLPDIDYYSPDTMKSDEREQFLTWHAEMTGKNAVFNFQQEIVRYC 230
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BLAST of mRNA_H-akashiwo_Contig968.3.1 vs. uniprot
Match: A0A6J2Y2V4_SITOR (DNA-directed DNA polymerase n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2Y2V4_SITOR)

HSP 1 Score: 91.3 bits (225), Expect = 2.720e-19
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 2 
Query:   20 IINNIKLVDSYNFVGSPLASFTKIFSLNPDLAKGYFPHCFARVEHMTYEGPIPSLDWYDADMMKSEARDQFLTWHEEQVEEQVTFNFMDECLRYC 304
            ++ N+K +DS N+    LA   K F L  +L KGYFPH F  V H  Y GP+P++++YD D MK+E R++F+ W++E+V E   F+F  E + YC
Sbjct:  241 VVGNVKFLDSLNYFPMALAKLPKAFGLT-ELKKGYFPHLFNTVGHQKYVGPMPAIEYYDPDNMKTEDREKFIKWYQERVAENYMFDFEKEFIEYC 334
[Close]
BLAST of mRNA_H-akashiwo_Contig968.3.1 vs. uniprot
Match: UPI0013F20DBC (uncharacterized protein LOC116849607 n=1 Tax=Odontomachus brunneus TaxID=486640 RepID=UPI0013F20DBC)

HSP 1 Score: 90.9 bits (224), Expect = 3.730e-19
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 2 
Query:   23 INNIKLVDSYNFVGSPLASFTKIFSLNPDLAKGYFPHCFARVEHMTYEGPIPSLDWYDADMMKSEARDQFLTWHEEQVEEQVTFNFMDECLRYC 304
            +   K +DS N++   L++  K F L   +AKG FPH F  +E+  Y  P+P +D+Y  D MKS+ R+QFLTWH E   +   FNF  E +RYC
Sbjct:  291 VGRTKFLDSANYMPMRLSALPKAFGLKDSVAKGVFPHLFNTIENQNYISPLPDIDYYSPDTMKSDEREQFLTWHVEMTGKNAVFNFQREIVRYC 384
[Close]
BLAST of mRNA_H-akashiwo_Contig968.3.1 vs. uniprot
Match: UPI00193D1A10 (uncharacterized protein LOC120353641 n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193D1A10)

HSP 1 Score: 90.5 bits (223), Expect = 5.040e-19
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 2 
Query:   32 IKLVDSYNFVGSPLASFTKIFSLNPDLAKGYFPHCFARVEHMTYEGPIPSLDWYDADMMKSEARDQFLTWHEEQVEEQVTFNFMDECLRYC 304
            ++++DS NFV SPL+SF K F L  +L KGYFPH F   ++  Y GP+P   +Y AD MK +AR +FL WH E+V E  TF+   E   YC
Sbjct:  128 LRVIDSVNFVASPLSSFPKTFGLK-ELKKGYFPHYFNTKDNQNYVGPMPDTSFYRADTMKPDARKEFLKWHTERVAEGYTFDMRRELEEYC 217
[Close]
BLAST of mRNA_H-akashiwo_Contig968.3.1 vs. uniprot
Match: A0A8J9XK52_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9XK52_BRAAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.560e-18
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:   26 NNIKLVDSYNFVGSPLASFTKIFSLNPDLAKGYFPHCFARVEHMTYEGPIPSLDWYDADMMKSEARDQFLTWHEEQVEEQVTFNFMDECLRYC 304
            N IK +DS N++  PL+     F       KGYFPH F + E++ YEGP+P  D+Y AD M + +R +F  W+ EQV   V FNF +E ++YC
Sbjct:  638 NKIKFIDSLNYMPLPLSKLPSAFKFEE--VKGYFPHLFNKTENINYEGPMPDADFYMADSMDTVSRTKFFKWYNEQVSNNVLFNFKEELVKYC 728
[Close]
BLAST of mRNA_H-akashiwo_Contig968.3.1 vs. uniprot
Match: A0A6G0TC89_APHGL (DNA-directed DNA polymerase n=2 Tax=Aphis glycines TaxID=307491 RepID=A0A6G0TC89_APHGL)

HSP 1 Score: 85.5 bits (210), Expect = 2.920e-17
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 2 
Query:   29 NIKLVDSYNFVGSPLASFTKIFSLNPDLAKGYFPHCFARVEHMTYEGPIPSLDWYDADMMKSEARDQFLTWHEEQVEEQVTFNFMDECLRYCS 307
            +I+++DS NF+ SPL+SF K F L  +L KGYFPH F  VE+  Y G +P  ++Y  + MK+E + +F  W+++++ E   FNF +E   YC+
Sbjct:  644 SIRIIDSSNFIQSPLSSFPKTFGLK-ELKKGYFPHFFNTVENQNYIGILPDKEYYGYETMKTENKQEFEKWYDDKINENYIFNFKEELEAYCN 735
[Close]
BLAST of mRNA_H-akashiwo_Contig968.3.1 vs. uniprot
Match: D6X3C1_TRICA (DNA-directed DNA polymerase n=1 Tax=Tribolium castaneum TaxID=7070 RepID=D6X3C1_TRICA)

HSP 1 Score: 85.5 bits (210), Expect = 2.930e-17
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 2 
Query:   26 NNIKLVDSYNFVGSPLASFTKIFSLNPDLAKGYFPHCFARVEHMTYEGPIPSLDWYDADMMKSEARDQFLTWHEEQVEEQVTFNFMDECLRYCS 307
            NN++++DS NFV  PL +F K F L  +L KGYFPH F   E+  Y G IP   +Y  + MK + R++FL WH+++ +E   F+F  E   YC+
Sbjct:  478 NNLRIIDSSNFVQGPLKNFPKTFGLK-ELKKGYFPHFFNTTENQNYIGKIPDTKYYGVNSMKPKEREEFLEWHKQKRKENYLFDFKKELYDYCN 570
[Close]
BLAST of mRNA_H-akashiwo_Contig968.3.1 vs. uniprot
Match: A0A6G0T1J1_APHGL (DNA-directed DNA polymerase (Fragment) n=1 Tax=Aphis glycines TaxID=307491 RepID=A0A6G0T1J1_APHGL)

HSP 1 Score: 85.5 bits (210), Expect = 2.940e-17
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 2 
Query:   29 NIKLVDSYNFVGSPLASFTKIFSLNPDLAKGYFPHCFARVEHMTYEGPIPSLDWYDADMMKSEARDQFLTWHEEQVEEQVTFNFMDECLRYCS 307
            +I+++DS NF+ SPL+SF K F L  +L KGYFPH F  VE+  Y G +P  ++Y  + MK+E + +F  W+++++ E   FNF +E   YC+
Sbjct:  630 SIRIIDSSNFIQSPLSSFPKTFGLK-ELKKGYFPHFFNTVENQNYIGILPDKEYYGYETMKTENKQEFEKWYDDKINENYIFNFKEELEAYCN 721
[Close]
BLAST of mRNA_H-akashiwo_Contig968.3.1 vs. uniprot
Match: A0A8J9TA42_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9TA42_BRAAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.430e-17
Identity = 37/93 (39.78%), Postives = 60/93 (64.52%), Query Frame = 2 
Query:   23 INNIKLVDSYNFVGSPLASFTKIFSLNPDLAKGYFPHCFARVEHMTYEGPIPSLDWYDADMMKSEARDQFLTWHEEQVEEQVTFNFMDECLRY 301
            + N+K +DS N+    L++ +K F L+    KGYFPH F   E+ TY GP+PS+ +Y+ D++K +AR++FL W+EE   ++  F+F  E + Y
Sbjct:    3 LGNVKFLDSLNYFPMALSALSKAFGLDDKFKKGYFPHLFNTWENQTYIGPMPSIKYYNPDIIKEDARNKFLKWYEEHKYDK--FDFQKEFIDY 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig968.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2PCB9_9HEXA1.250e-2047.31DNA-directed DNA polymerase n=1 Tax=Allacma fusca ... [more]
UPI0013F2A9781.960e-1942.55LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
A0A6J2Y2V4_SITOR2.720e-1943.16DNA-directed DNA polymerase n=1 Tax=Sitophilus ory... [more]
UPI0013F20DBC3.730e-1942.55uncharacterized protein LOC116849607 n=1 Tax=Odont... [more]
UPI00193D1A105.040e-1948.35uncharacterized protein LOC120353641 n=1 Tax=Nilap... [more]
A0A8J9XK52_BRAAE4.560e-1843.01Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
A0A6G0TC89_APHGL2.920e-1741.94DNA-directed DNA polymerase n=2 Tax=Aphis glycines... [more]
D6X3C1_TRICA2.930e-1742.55DNA-directed DNA polymerase n=1 Tax=Tribolium cast... [more]
A0A6G0T1J1_APHGL2.940e-1741.94DNA-directed DNA polymerase (Fragment) n=1 Tax=Aph... [more]
A0A8J9TA42_BRAAE4.430e-1739.78Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig968contigH-akashiwo_Contig968:362687..362993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7070.TC011914-PA
PFAMsDNA_pol_B_2
Model size308
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.44e-18
EggNOG OGs2CMGD@1|root,2QQ9V@2759|Eukaryota,39B3J@33154|Opisthokonta,3BKG5@33208|Metazoa,3CTR5@33213|Bilateria,41V8V@6656|Arthropoda,3SQAF@50557|Insecta
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388061.7418993-UTR-H-akashiwo_Contig968:362686..3626931681388061.7418993-UTR-H-akashiwo_Contig968:362686..362693Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig968 362687..362693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388061.7529676-CDS-H-akashiwo_Contig968:362693..3629931681388061.7529676-CDS-H-akashiwo_Contig968:362693..362993Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig968 362694..362993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig968.3.1prot_H-akashiwo_Contig968.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig968 362694..362993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig968.3.1

>prot_H-akashiwo_Contig968.3.1 ID=prot_H-akashiwo_Contig968.3.1|Name=mRNA_H-akashiwo_Contig968.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=100bp
MTATIINNIKLVDSYNFVGSPLASFTKIFSLNPDLAKGYFPHCFARVEHM
TYEGPIPSLDWYDADMMKSEARDQFLTWHEEQVEEQVTFNFMDECLRYCS
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mRNA from alignment at H-akashiwo_Contig968:362687..362993+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig968.3.1 ID=mRNA_H-akashiwo_Contig968.3.1|Name=mRNA_H-akashiwo_Contig968.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=307bp|location=Sequence derived from alignment at H-akashiwo_Contig968:362687..362993+ (Heterosigma akashiwo CCMP452)
GAAGATTATGACAGCCACGATCATCAACAACATCAAGTTAGTGGATTCGT
ATAATTTTGTAGGGTCTCCGTTGGCAAGCTTCACGAAAATCTTTTCATTG
AATCCAGATCTGGCGAAGGGGTACTTCCCCCACTGTTTTGCTCGGGTGGA
ACACATGACCTACGAAGGACCCATACCGTCGCTCGATTGGTACGACGCGG
ACATGATGAAATCTGAGGCGCGCGATCAGTTTTTGACATGGCACGAAGAG
CAAGTGGAGGAACAGGTCACTTTTAATTTCATGGACGAATGCCTGAGGTA
TTGCTCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig968:362687..362993+

>mRNA_H-akashiwo_Contig968.3.1 ID=mRNA_H-akashiwo_Contig968.3.1|Name=mRNA_H-akashiwo_Contig968.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=300bp|location=Sequence derived from alignment at H-akashiwo_Contig968:362687..362993+ (Heterosigma akashiwo CCMP452)
ATGACAGCCACGATCATCAACAACATCAAGTTAGTGGATTCGTATAATTT
TGTAGGGTCTCCGTTGGCAAGCTTCACGAAAATCTTTTCATTGAATCCAG
ATCTGGCGAAGGGGTACTTCCCCCACTGTTTTGCTCGGGTGGAACACATG
ACCTACGAAGGACCCATACCGTCGCTCGATTGGTACGACGCGGACATGAT
GAAATCTGAGGCGCGCGATCAGTTTTTGACATGGCACGAAGAGCAAGTGG
AGGAACAGGTCACTTTTAATTTCATGGACGAATGCCTGAGGTATTGCTCG
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