mRNA_H-akashiwo_Contig96.17.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig96.17.1
Unique NamemRNA_H-akashiwo_Contig96.17.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig96.17.1 vs. uniprot
Match: A0A7S3XJU9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJU9_HETAK)

HSP 1 Score: 246 bits (628), Expect = 3.750e-79
Identity = 116/176 (65.91%), Postives = 141/176 (80.11%), Query Frame = 1 
Query:  250 ANGSS-QDPEVQDEKKDFRTYPARFYVLVVYCFTILSASTLRLSFSSIDDDAQAFWGVDSSAVDWLVTGSYLMYPIGSAAGEMVQERQGFVAMIQSAQALTLAGCCFRFLACFWENTGGYTLLLAGQIMGAVGLPPLLNGAGVLATAWFPLAERDNALTCTVAAYVVGLGLSYLLS 774
            AN +S +DP+V++EK +F+TYP RFY+LVV CFTI+ AST+R SFSSIDD+AQA+WGV SSA+DWL++GS L+YP+GSA GE++Q RQGFV M++SAQALT  GC  R LAC W   GGY LLL GQ+MGAVG PPL N AGV+ TAWFP+AERDN L C VAA + GL L Y LS
Sbjct:   15 ANATSFEDPQVREEK-NFKTYPVRFYILVVQCFTIMFASTIRYSFSSIDDEAQAYWGVSSSAIDWLISGSCLLYPVGSAVGEVLQARQGFVTMVRSAQALTTVGCALRLLACLWGTPGGYALLLVGQMMGAVGAPPLFNSAGVVGTAWFPMAERDNMLACAVAAELAGLSLGYFLS 189
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BLAST of mRNA_H-akashiwo_Contig96.17.1 vs. uniprot
Match: I7LSZ4_TETTS (MFS transporter n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7LSZ4_TETTS)

HSP 1 Score: 64.3 bits (155), Expect = 4.600e-8
Identity = 42/170 (24.71%), Postives = 82/170 (48.24%), Query Frame = 1 
Query:  274 EVQDEKKDFRTYPARFYVLVVYCFTILSASTLRLSFSSIDDDAQAFWG-----VDSSAVDWLVTGSYLMYPIGSAAGEMVQERQGFVAMIQSAQALTLAGCCFRFLACFWENTGGYTLLLAGQIMGAVGLPPLLNGAGVLATAWFPLAERDNALTCTVAAYVVGLGLSYL 768
            + Q+E+ +FR YP R++++V++CF  +      ++FSSI    Q  +      V  +++ W++   ++ +P        +   +G    + +    T+ G   R L      + G+ +L  GQI GA+G P +LN    +A+ WF   +R  A        ++G+G+ +L
Sbjct:   18 QTQNEE-EFRDYPYRWWIVVLFCFPNMMNGIEWITFSSISSQVQQAYDQTQFVVTLTSLVWMIIYVFINFP-----SNYILSDKGLKIGVFTGIFFTILGAWVRLLI---NESFGWAIL--GQIFGAIGQPFILNAPAQIASVWFKPKQRQMATAILSLINIIGVGIGFL 176
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BLAST of mRNA_H-akashiwo_Contig96.17.1 vs. uniprot
Match: I7M602_TETTS (MFS transporter n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M602_TETTS)

HSP 1 Score: 63.9 bits (154), Expect = 6.730e-8
Identity = 39/160 (24.38%), Postives = 71/160 (44.38%), Query Frame = 1 
Query:  289 KKDFRTYPARFYVLVVYCFTILSASTLRLSFSSIDDDAQAFWGVDSSAVDWLVTGSYLMYPIGSAAGEMVQERQGFVAMIQSAQALTLAGCCFRFLACFWENTGGYTLLLAGQIMGAVGLPPLLNGAGVLATAWFPLAERDNALTCTVAAYVVGLGLSYL 768
            K++F+ YP R++++V++CF  +      ++FSSI    Q  + V    V      S   Y + +     +   +G    +      T+ G   R L     ++ G+ +L  GQ+ G +  P +LN    +A  WF   +R  A        V+G+G+ +L
Sbjct:   97 KEEFKDYPYRWWIVVLFCFPNMMNGIEWITFSSISTQVQQAYNVSQFVVSLTSLASMFCYIVINFPSNYILSEKGLRIGVFIGIFFTIVGAWIRLLI---NDSFGWAIL--GQVFGGIAQPFILNAPTQIAAVWFKPQQRQIATAILSLINVIGVGIGFL 251
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BLAST of mRNA_H-akashiwo_Contig96.17.1 vs. uniprot
Match: A7RLQ7_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RLQ7_NEMVE)

HSP 1 Score: 58.2 bits (139), Expect = 5.200e-6
Identity = 50/199 (25.13%), Postives = 94/199 (47.24%), Query Frame = 1 
Query:  241 ALLANGSSQDPEVQDEKKDFRTYPARFYVLVVYCFTILSASTLRL--SFSSIDDDAQAFWGVDSSAV---DWLVTGSYLMYPIGSAAGEMVQERQGFVAMIQSAQALTLAGCCFRFLAC--FWENTGGYTLLLAGQIMGAVGLPPLLN-GAGVLATAWFPLAERDNALTCTVAAYVVGLGLSYLLSVELVGEADDGTVS 813
            ++ + G  +D +    K + +TYP R+Y+L+V  FT+L+A+T  L  ++  I +  Q  +G   + V     L  G  ++  I S+      + +G    + ++ ++ L G     L    +W  T   TL+  G+ + A+  P + N G  VL+ +WFP  ER  A         +G   SY++   +V + + G ++
Sbjct:   18 SISSLGPLEDEDSIPNKPEIKTYPQRWYMLIV--FTLLNATTNLLWNTWPPIQETCQLVFGWTKTNVLIIGALQAGGSILSVIPSS---WFIDTKGLRVAVVTSLSVQLVGVVLEILPVHPYWART---TLITFGEFLIAIAAPVVQNVGVLVLSASWFPPEERMTATAFATLVSYLGSASSYVMGPYMVPDVETGNIT 208
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BLAST of mRNA_H-akashiwo_Contig96.17.1 vs. uniprot
Match: A0A3S3NPI7_9ACAR (Feline leukemia virus subgroup C receptor-related protein 2-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3NPI7_9ACAR)

HSP 1 Score: 55.5 bits (132), Expect = 3.820e-5
Identity = 35/170 (20.59%), Postives = 82/170 (48.24%), Query Frame = 1 
Query:  265 QDPEVQDEKKDFRTYPARFYVLVVYCFTILSASTLRLSFSSIDDDAQAFWGVDSSAVDWLVTGSYLMYPIGSA-AGEMVQERQGFVAMIQSAQALTLAGCCFRFLACFWENTGGYTLLLAGQIMGAVGLPPLLNGAGVLATAWFPLAERDNALTCTVAAYVVGLGLSYLL 771
            ++ ++  + + ++ Y  R+++LV+YCF+I+     +L ++SI +    ++ V+  AV+W      +   + S   G+++++    + + +S     L       + CF      + L++ GQ++ ++   P  +   +L   WF   E    +  T A+   G+ L++LL
Sbjct:    3 REEKLNSDHRVYKVYSRRYFILVLYCFSIVLVGFQQLQYTSIANVIVKYYNVNPVAVNWTNLSQNVCTVLFSYHIGKLIEK----IGLRKSMILFALLSTFGAAIKCFTFARNKFWLMMVGQLILSLFFTPTYSLCPLLGALWFKPKEIALVVGLTNASMTFGMALTFLL 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig96.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S3XJU9_HETAK3.750e-7965.91Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
I7LSZ4_TETTS4.600e-824.71MFS transporter n=1 Tax=Tetrahymena thermophila (s... [more]
I7M602_TETTS6.730e-824.38MFS transporter n=1 Tax=Tetrahymena thermophila (s... [more]
A7RLQ7_NEMVE5.200e-625.13Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A3S3NPI7_9ACAR3.820e-520.59Feline leukemia virus subgroup C receptor-related ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig96contigH-akashiwo_Contig96:1210198..1211819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog227086.JGI_V11_82903
Preferred nameMFSD7
PFAMsMFS_1
Model size821
Max annot lvl2759|Eukaryota
KEGG koko:K08220,ko:K12306
KEGG TC2.A.1.28.1,2.A.1.28.2,2.A.1.28.4
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.22e-16
EggNOG OGsKOG2563@1|root,KOG2563@2759|Eukaryota
Descriptiontransmembrane transport
Cds size621
COG categoryJ
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388059.4702768-UTR-H-akashiwo_Contig96:1210197..12103951681388059.4702768-UTR-H-akashiwo_Contig96:1210197..1210395Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig96 1210198..1210395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388059.48337-CDS-H-akashiwo_Contig96:1210395..12106721681388059.48337-CDS-H-akashiwo_Contig96:1210395..1210672Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 1210396..1210672 +
1681388059.4940956-CDS-H-akashiwo_Contig96:1211325..12113751681388059.4940956-CDS-H-akashiwo_Contig96:1211325..1211375Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 1211326..1211375 +
1681388059.5059636-CDS-H-akashiwo_Contig96:1211525..12118191681388059.5059636-CDS-H-akashiwo_Contig96:1211525..1211819Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 1211526..1211819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig96.17.1prot_H-akashiwo_Contig96.17.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig96 1210396..1211819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig96.17.1

>prot_H-akashiwo_Contig96.17.1 ID=prot_H-akashiwo_Contig96.17.1|Name=mRNA_H-akashiwo_Contig96.17.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=207bp
MVSNRRGFTEIEGEALLANGSSQDPEVQDEKKDFRTYPARFYVLVVYCFT
ILSASTLRLSFSSIDDDAQAFWGVDSSAVDWLVTGSYLMYPIGSAAGEMV
QERQGFVAMIQSAQALTLAGCCFRFLACFWENTGGYTLLLAGQIMGAVGL
PPLLNGAGVLATAWFPLAERDNALTCTVAAYVVGLGLSYLLSVELVGEAD
DGTVSGM
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mRNA from alignment at H-akashiwo_Contig96:1210198..1211819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig96.17.1 ID=mRNA_H-akashiwo_Contig96.17.1|Name=mRNA_H-akashiwo_Contig96.17.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1622bp|location=Sequence derived from alignment at H-akashiwo_Contig96:1210198..1211819+ (Heterosigma akashiwo CCMP452)
CGAGGTTAGGCCCCTGGAAGACGGGTAGCTAGCCAACACCCCCCGCCTTC
CCTTTCAACTCACCATAAACACTTCACCAGATTGAATAGCGCACGTTTCC
AATTCAAGCCTTTGGCTTGGGGGTGCGCTTTATAAGTCACATTCACCACC
ACCACCACCACCACGCCAGCAGCAGTCACACAGTCAGAGTCAGATCAAAT
GGTAAGCAATCGGCGAGGCTTTACCGAGATTGAGGGCGAGGCTTTGCTAG
CAAATGGAAGCAGCCAAGATCCCGAAGTTCAAGATGAAAAGAAGGATTTC
CGAACTTATCCTGCGCGGTTTTACGTATTGGTGGTGTACTGCTTCACCAT
CCTCTCTGCAAGCACTCTAAGATTGAGCTTTTCATCTATTGATGATGACG
CACAAGCCTTCTGGGGCGTAGATTCAAGTGCCGTCGATTGGCTTGTCACT
GGGAGTTATTTGATGTATCCCATAGGTAATCATTTTCCATGTGTGAGGCC
ATCTCCCTGTCATTATTCATTATGTATGCAACATGCATGCTATATTCACC
CTTTGTTACAGTTGATATAGTTTCCTTCTTAAAACACTGTCAGCTTGTAT
GCTACATGCCATCTTCACCCTTTGTCTCAAAACACTGTCAGCTTCTTCTC
TGCAATGCAGTGATGGTATTTGGTTCTATCACGTGCCGGGAAACATGCTG
ATGCATGTATGTAGTCTAAGAGGGATAGAGAGAGGAACAGTATCTCTGAC
CTAATTAATCGGCTGCCAGCCTGCAGGCTCTGCTGCAAGAGGTGAGCAGG
CTAGCTCAATTCGTGAAGTCGACGGGGAAGCTGAAGACCAGAAGAGGGGG
ACCGTGATGAATGTTATAAAACAGGCCAATGGACGGACTTAAGGTGTTGG
GTGCAGTAATGTTTGATAATTGGTTGATGGGTAGACTCAGGTGCTGGGTG
TTATAAGATTGGGTTTGTGCCGAGGTTTTCTTTGCAATGTAAGATAGCTT
GGAGAGTGGTATTCTGCAGTGGGAATGGTGACGGACTACGGCGGTGGTTC
ATGAAGATGCAACACTCTTAGCCTGAAACCTTTTCATCTGTATAACTTGC
TGAATATCTGACCATACCTCAATCACAGGCTCTGCTGCAGGTGAAATGGT
GCAAGAACGCCAGGGCTTCGTTGCCATGGTAGGTGCTGTTTTTAATGGTG
TCTTATCTAACTCTGTTGCCACACTTTTTTGTGCATGAGCGATGCCAATG
ACTTCAACTGACCCCTTTTTCTATTTGTCACACACACAATCCGACACCTC
ATCTATGGGCCCAACTCTTTTACCTCAGATCCAGTCAGCGCAAGCATTGA
CACTGGCCGGTTGCTGTTTCCGGTTCCTGGCCTGCTTCTGGGAGAACACT
GGGGGTTACACGCTGCTGCTGGCAGGGCAGATCATGGGAGCAGTTGGCCT
GCCCCCACTGCTGAACGGCGCCGGCGTGCTGGCCACTGCCTGGTTCCCGC
TCGCAGAGCGCGACAACGCTCTGACCTGCACCGTCGCCGCATACGTAGTC
GGCCTCGGCCTGAGCTACCTGCTCTCTGTGGAGCTGGTGGGCGAGGCGGA
CGACGGGACCGTCTCGGGAATG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig96:1210198..1211819+

>mRNA_H-akashiwo_Contig96.17.1 ID=mRNA_H-akashiwo_Contig96.17.1|Name=mRNA_H-akashiwo_Contig96.17.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=621bp|location=Sequence derived from alignment at H-akashiwo_Contig96:1210198..1211819+ (Heterosigma akashiwo CCMP452)
ATGGTAAGCAATCGGCGAGGCTTTACCGAGATTGAGGGCGAGGCTTTGCT
AGCAAATGGAAGCAGCCAAGATCCCGAAGTTCAAGATGAAAAGAAGGATT
TCCGAACTTATCCTGCGCGGTTTTACGTATTGGTGGTGTACTGCTTCACC
ATCCTCTCTGCAAGCACTCTAAGATTGAGCTTTTCATCTATTGATGATGA
CGCACAAGCCTTCTGGGGCGTAGATTCAAGTGCCGTCGATTGGCTTGTCA
CTGGGAGTTATTTGATGTATCCCATAGGCTCTGCTGCAGGTGAAATGGTG
CAAGAACGCCAGGGCTTCGTTGCCATGATCCAGTCAGCGCAAGCATTGAC
ACTGGCCGGTTGCTGTTTCCGGTTCCTGGCCTGCTTCTGGGAGAACACTG
GGGGTTACACGCTGCTGCTGGCAGGGCAGATCATGGGAGCAGTTGGCCTG
CCCCCACTGCTGAACGGCGCCGGCGTGCTGGCCACTGCCTGGTTCCCGCT
CGCAGAGCGCGACAACGCTCTGACCTGCACCGTCGCCGCATACGTAGTCG
GCCTCGGCCTGAGCTACCTGCTCTCTGTGGAGCTGGTGGGCGAGGCGGAC
GACGGGACCGTCTCGGGAATG
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