mRNA_H-akashiwo_Contig958.4.1 (mRNA) Heterosigma akashiwo CCMP452
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: UPI001BD4154C (ribonuclease H2 subunit C n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD4154C) HSP 1 Score: 60.8 bits (146), Expect = 1.390e-9 Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = 1 Query: 1 MTKENSIIGVQRVEQT--TPNVLIQHLPCKIHHDGPAEIDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWKESIIPES 303 M+ +S+ VQ V P V + +PC+I HDGPA++ +YF A ++D +++ SFRGR LKG ++S P G G+V KE+ P S Sbjct: 1 MSSNSSVTHVQIVSSAGQAPRVPVHLMPCEIEHDGPAQVSQYFT-------------ATTKDGKQEKSV---SFRGRGLKGQELSCPQGYTGLVLKETNKPGS 87
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: A0A317UYW4_9EURO (Ribonuclease H2 subunit C n=3 Tax=Aspergillus TaxID=5052 RepID=A0A317UYW4_9EURO) HSP 1 Score: 60.8 bits (146), Expect = 2.170e-9 Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1 Query: 49 TPNVLIQHLPCKIHHDGPAE-IDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVV 276 TPN+L PC+IHHDGP E +++Y+ P PDEK +N QQTA+ FRGRRL+G +++P+G GV+ Sbjct: 22 TPNIL----PCRIHHDGPVESLNRYWTP---LPDEK---------DNNQQTAY---FRGRRLRGRRVAIPEGYEGVI 79
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: A0A1L9VW70_ASPGL (Uncharacterized protein n=1 Tax=Aspergillus glaucus CBS 516.65 TaxID=1160497 RepID=A0A1L9VW70_ASPGL) HSP 1 Score: 60.8 bits (146), Expect = 2.460e-9 Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1 Query: 40 EQTTPNVLIQHLPCKIHHDGPAE-IDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVV 276 E TPN+L PC+IHHDGP + + +Y+ P A +EDEN Q IS FRGR+L+G +++PDG GVV Sbjct: 21 ECCTPNIL----PCRIHHDGPVDSLQRYWAPA-----------ADNEDENLQ----ISHFRGRKLRGRRVAIPDGYQGVV 81
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: UPI001561416B (ribonuclease H2 subunit C isoform X1 n=4 Tax=Acipenseroidei TaxID=186622 RepID=UPI001561416B) HSP 1 Score: 59.7 bits (143), Expect = 5.300e-9 Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1 Query: 73 LPCKIHHDGPAEIDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWKESIIPESQ 306 LPC+I HDGPA + +YF P A+ E ++ I+SFRGR LKG ++S+P G G+V KE P S+ Sbjct: 43 LPCEIEHDGPASVGRYFSP------------AVKETKSEM----IASFRGRGLKGQEVSVPQGYSGMVLKEDHKPVSE 104
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: A0A2R5GUU5_9STRA (Ribonuclease H2 subunit C n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUU5_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 6.170e-9 Identity = 30/87 (34.48%), Postives = 51/87 (58.62%), Query Frame = 1 Query: 25 GVQRVEQTTPNVLIQHLPCKIHHDGPAEIDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWKE 285 G++ ++ V + HLPCKIHHDG A+++ YF P E D+K I +++ ++FRGR+L G +++LP+ G V ++ Sbjct: 9 GLESAQRGLRPVQVMHLPCKIHHDGAADVEAYFRPTE--TDKKSG--TIVDEKGDMAQIREATFRGRKLLGAELTLPEKTQGFVLEK 91
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: A0A1S9RBX0_PENBI (Ribonuclease H2 subunit C n=2 Tax=Penicillium brasilianum TaxID=104259 RepID=A0A1S9RBX0_PENBI) HSP 1 Score: 59.7 bits (143), Expect = 6.680e-9 Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 1 Query: 13 NSIIGVQRVEQTTPNVLIQHLPCKIHHDGPAE-IDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWK--ESIIPESQ 306 +S+ + + TPNVL PC+IHHDGP E +++++P + D+KQ T+H FRGRRL+G +++P+G GV+ + ++P SQ Sbjct: 15 SSLASDEETTKFTPNVL----PCRIHHDGPIESTNRFWIPQTDEKDDKQ-------------TSH---FRGRRLRGRRVAIPEGYQGVIATPTDRVLPASQ 95
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: Q0CHU1_ASPTN (RNA exonuclease 4 n=1 Tax=Aspergillus terreus (strain NIH 2624 / FGSC A1156) TaxID=341663 RepID=Q0CHU1_ASPTN) HSP 1 Score: 61.2 bits (147), Expect = 9.100e-9 Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 40 EQTTPNVLIQHLPCKIHHDGPAE-IDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVV--WKESIIP 297 ++ TPN+L PC++HHDGP +D++++P PDEK + A QTAH FRGR+L+G +++P+G GVV E +IP Sbjct: 373 DKCTPNIL----PCRVHHDGPVNSVDRFWIP---VPDEK---------DKALQTAH---FRGRKLRGRHVAVPEGYQGVVAALTERVIP 442
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: A0A1E3B4D7_9EURO (Uncharacterized protein n=2 Tax=Aspergillus TaxID=5052 RepID=A0A1E3B4D7_9EURO) HSP 1 Score: 58.9 bits (141), Expect = 1.340e-8 Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 1 Query: 40 EQTTPNVLIQHLPCKIHHDGPAE-IDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVV 276 E TPN+L PC+IHHDGP E + +Y+ P ++ DEK QT+H FRGR+L+G +++P+G GVV Sbjct: 21 ESCTPNIL----PCRIHHDGPVESLQRYWAPEADNEDEKL------------QTSH---FRGRKLRGRRVAIPEGYQGVV 81
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: A0A1Q5UQX5_9EURO (Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase 40 kDa form n=1 Tax=Penicillium subrubescens TaxID=1316194 RepID=A0A1Q5UQX5_9EURO) HSP 1 Score: 60.1 bits (144), Expect = 2.260e-8 Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 1 Query: 13 NSIIGVQRVEQTTPNVLIQHLPCKIHHDGPAE-IDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWK--ESIIPESQ 306 +S++ + + TPN+L PC+IHHDGP E +++++P + D KQ TAH FRGRRL+G +++P+G GV+ + ++P SQ Sbjct: 15 SSLVSDEAPTKFTPNIL----PCRIHHDGPIESTNRFWIPQTDEKDNKQ-------------TAH---FRGRRLRGRRVAIPEGYQGVIATPTDRVLPASQ 95
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Match: W5K0X1_ASTMX (Ribonuclease H2 subunit C n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=W5K0X1_ASTMX) HSP 1 Score: 57.4 bits (137), Expect = 2.910e-8 Identity = 32/77 (41.56%), Postives = 40/77 (51.95%), Query Frame = 1 Query: 73 LPCKIHHDGPAEIDKYFLPGEESPDEKQHHQAISEDENAQQTAHISSFRGRRLKGTDISLPDGVVGVVWKESIIPES 303 LPC+I HDGPAEI ++F P + E Q+ SFRGR LKG ++S P G G+V KE P S Sbjct: 26 LPCEIEHDGPAEISRFFTP------------TVKE----QKCEKTVSFRGRGLKGQEVSCPQGYTGLVLKEVQRPSS 86 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig958.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig958.4.1 >prot_H-akashiwo_Contig958.4.1 ID=prot_H-akashiwo_Contig958.4.1|Name=mRNA_H-akashiwo_Contig958.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=102bp MTKENSIIGVQRVEQTTPNVLIQHLPCKIHHDGPAEIDKYFLPGEESPDEback to top mRNA from alignment at H-akashiwo_Contig958:283078..284229- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig958.4.1 ID=mRNA_H-akashiwo_Contig958.4.1|Name=mRNA_H-akashiwo_Contig958.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1152bp|location=Sequence derived from alignment at H-akashiwo_Contig958:283078..284229- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig958:283078..284229- >mRNA_H-akashiwo_Contig958.4.1 ID=mRNA_H-akashiwo_Contig958.4.1|Name=mRNA_H-akashiwo_Contig958.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=306bp|location=Sequence derived from alignment at H-akashiwo_Contig958:283078..284229- (Heterosigma akashiwo CCMP452)back to top |