mRNA_H-akashiwo_Contig124.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig124.3.1
Unique NamemRNA_H-akashiwo_Contig124.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig124.3.1 vs. uniprot
Match: A0A7S2UU65_9STRA (Eukaryotic translation initiation factor 5A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU65_9STRA)

HSP 1 Score: 249 bits (636), Expect = 6.850e-79
Identity = 119/161 (73.91%), Postives = 141/161 (87.58%), Query Frame = 2
Query:   23 ETAATLDDYNFDQGEAGASLTIPMEAGQIRKGGHIVIKGHPCKVVSVSTSKTGKHGHAKCNFTATDIFTGKKYEDIVPSTHNTTVPNVFRNEYQLLDIQDDGFLSLMDDAGDTKEDIKLPEHPEGFKEQIQSEFDSGKSLAVTVLSAMGHSQVIAIKEDSS 505
            E  A LDD++FD GE+GASLTIPMEAGQIRKGGHIVIKG PCKVV+VSTSKTGKHGHAK NFTA DIFTGKKYEDIVP+TH T+VPNV R EYQL+DI DDG+LSL+ D+GDTK+D+ LP HPEGF ++I++ FD GKS+ +TVLSAMG  QV+++KED+S
Sbjct:    3 EGGAKLDDFHFDTGESGASLTIPMEAGQIRKGGHIVIKGKPCKVVNVSTSKTGKHGHAKANFTAIDIFTGKKYEDIVPTTHTTSVPNVSRAEYQLIDISDDGYLSLLTDSGDTKDDLVLPTHPEGFADEIRAAFDEGKSMVLTVLSAMGTDQVVSMKEDTS 163          
BLAST of mRNA_H-akashiwo_Contig124.3.1 vs. uniprot
Match: A0A835Z7R2_9STRA (Eukaryotic translation initiation factor 5A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7R2_9STRA)

HSP 1 Score: 231 bits (590), Expect = 6.920e-72
Identity = 114/164 (69.51%), Postives = 140/164 (85.37%), Query Frame = 2
Query:   23 ETAAT---LDDYNFDQGEAGASLTIPMEAGQIRKGGHIVIKGHPCKVVSVSTSKTGKHGHAKCNFTATDIFTGKKYEDIVPSTHNTTVPNVFRNEYQLLDIQDDGFLSLMDDAGDTKEDIKLPEHPEGFKEQIQSEFDSGKSLAVTVLSAMGHSQVIAIKEDSS 505
            ET+AT   L++Y+F   +AGAS T PM+AGQIRKGG+IVIKG PCKV +VSTSKTGKHGHAK NFTA DIFTGKK EDIVP++H T+VPNV R +YQLLDI DDGFLSL+ ++GDTK+D+KLP  PEGF EQ+++EFD+GK+L VTV+SAMGH QV+A KED++
Sbjct:    3 ETSATDEALNNYDFTSSDAGASHTFPMDAGQIRKGGYIVIKGRPCKVANVSTSKTGKHGHAKANFTAIDIFTGKKLEDIVPTSHATSVPNVARVDYQLLDISDDGFLSLLTESGDTKDDLKLPGFPEGFDEQLRTEFDAGKTLIVTVVSAMGHDQVMAYKEDTT 166          
BLAST of mRNA_H-akashiwo_Contig124.3.1 vs. uniprot
Match: D8LBS0_ECTSI (eIF-5a domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS0_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 2.830e-71
Identity = 113/165 (68.48%), Postives = 137/165 (83.03%), Query Frame = 2
Query:    8 STMAEETAATLDDYNFDQGEAGASLTIPMEAGQIRKGGHIVIKGHPCKVVSVSTSKTGKHGHAKCNFTATDIFTGKKYEDIVPSTHNTTVPNVFRNEYQLLDIQDDGFLSLMDDAGDTKEDIKLPEHPEGFKEQIQSEFDSGKSLAVTVLSAMGHSQVIAIKEDS 502
            STMA E    L+DY+F   +AGAS TIP EAGQIRKGG+IVIKGHPCKVV+VSTSKTGKHGHAK NFTATDIFTGKK ED++PSTH T+VP V RNEYQLLDI DDGF SL+ + GDTK+D++LP +PEGF  +I+++FD G +L VTV++AMGH Q++  KE+S
Sbjct:   37 STMATEDK--LNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGNEIKAKFDEGATLCVTVMAAMGHEQIVTYKEES 199          
BLAST of mRNA_H-akashiwo_Contig124.3.1 vs. uniprot
Match: A0A6H5KDL5_9PHAE (eIF-5a domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL5_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 9.200e-70
Identity = 112/165 (67.88%), Postives = 137/165 (83.03%), Query Frame = 2
Query:    8 STMAEETAATLDDYNFDQGEAGASLTIPMEAGQIRKGGHIVIKGHPCKVVSVSTSKTGKHGHAKCNFTATDIFTGKKYEDIVPSTHNTTVPNVFRNEYQLLDIQDDGFLSLMDDAGDTKEDIKLPEHPEGFKEQIQSEFDSGKSLAVTVLSAMGHSQVIAIKEDS 502
            STMA E    L+DY+F   +AGAS TIP EAGQIRKGG+IVIKGHPCKVV+VSTSKTGKHGHAK NFTATDIFTGKK ED++PSTH T+VP V RNEYQLLDI DDGF SL+ + GDTK+D++LP +PEGF  +I+++F+ G +L VTV++AMGH Q++  KE+S
Sbjct:   91 STMATEDK--LNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGNEIKAKFEEGLTLCVTVMAAMGHEQIVTYKEES 253          
BLAST of mRNA_H-akashiwo_Contig124.3.1 vs. uniprot
Match: K3WUI8_GLOUD (Eukaryotic translation initiation factor 5A n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUI8_GLOUD)

HSP 1 Score: 224 bits (570), Expect = 5.240e-69
Identity = 110/155 (70.97%), Postives = 128/155 (82.58%), Query Frame = 2
Query:   41 DDYNFDQGEAGASLTIPMEAGQIRKGGHIVIKGHPCKVVSVSTSKTGKHGHAKCNFTATDIFTGKKYEDIVPSTHNTTVPNVFRNEYQLLDIQDDGFLSLMDDAGDTKEDIKLPEHPEGFKEQIQSEFDSGKSLAVTVLSAMGHSQVIAIKEDSS 505
            DDY F+  +AGAS T P EAGQIRKGG I+IKGHPCKVVSVSTSKTGKHGHAKCNFTA DIFT KK EDIVPSTH T+VP V R+EY LLDI DD FLSLMDD+G+T+EDIKLP  P+ F E+I+++FD+GK L +TVL A G  QVI+ KED++
Sbjct:    3 DDYTFESTDAGASDTFPCEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVSRSEYTLLDITDDDFLSLMDDSGETREDIKLPTFPDNFAEEIRADFDAGKQLVLTVLKACGTEQVISKKEDTT 157          
BLAST of mRNA_H-akashiwo_Contig124.3.1 vs. uniprot
Match: A0A485LC56_9STRA (Eukaryotic translation initiation factor 5A n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LC56_9STRA)

HSP 1 Score: 223 bits (569), Expect = 7.660e-69
Identity = 105/153 (68.63%), Postives = 130/153 (84.97%), Query Frame = 2
Query:   41 DDYNFDQGEAGASLTIPMEAGQIRKGGHIVIKGHPCKVVSVSTSKTGKHGHAKCNFTATDIFTGKKYEDIVPSTHNTTVPNVFRNEYQLLDIQDDGFLSLMDDAGDTKEDIKLPEHPEGFKEQIQSEFDSGKSLAVTVLSAMGHSQVIAIKED 499
            +DY+F+  +AGAS T PMEAGQI+KGG ++IKGHPCKVVS+STSKTGKHGHAKCNFTA DIFT KKYEDIVPSTHN +VP V R EY LLDI D+ ++SLMDD+GDT+ED+KLP  PEGF ++I+++F++GK LAVT+L A G  Q+I+ KED
Sbjct:    4 EDYSFESSDAGASETFPMEAGQIKKGGFMMIKGHPCKVVSISTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHNCSVPFVSRAEYTLLDISDEDYVSLMDDSGDTREDVKLPAIPEGFGDEIRADFEAGKQLAVTILKACGIEQIISKKED 156          
BLAST of mRNA_H-akashiwo_Contig124.3.1 vs. uniprot
Match: A0A067C6X2_SAPPC (Eukaryotic translation initiation factor 5A n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C6X2_SAPPC)

HSP 1 Score: 222 bits (565), Expect = 2.960e-68
Identity = 105/155 (67.74%), Postives = 132/155 (85.16%), Query Frame = 2
Query:   41 DDYNFDQGEAGASLTIPMEAGQIRKGGHIVIKGHPCKVVSVSTSKTGKHGHAKCNFTATDIFTGKKYEDIVPSTHNTTVPNVFRNEYQLLDIQDDGFLSLMDDAGDTKEDIKLPEHPEGFKEQIQSEFDSGKSLAVTVLSAMGHSQVIAIKEDSS 505
            +DY+F+  +AGASLT P EAGQ++KGG I+IKGHPCKVVSVSTSKTGKHGHAKCNFTA DIFT KKYEDIVPSTHN +VP V R EY LLDI D+ ++SLMDD+G+T+EDIKLP  PEGF ++I+++F++GK L+++VL A G  Q+IA KED++
Sbjct:    4 EDYHFESTDAGASLTYPSEAGQVKKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHNCSVPFVSRAEYTLLDISDEDYVSLMDDSGETREDIKLPNIPEGFGDEIRADFEAGKQLSISVLRACGIEQIIAKKEDTT 158          
BLAST of mRNA_H-akashiwo_Contig124.3.1 vs. uniprot
Match: A0A024UN82_9STRA (Eukaryotic translation initiation factor 5A n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024UN82_9STRA)

HSP 1 Score: 221 bits (562), Expect = 8.930e-68
Identity = 106/155 (68.39%), Postives = 130/155 (83.87%), Query Frame = 2
Query:   41 DDYNFDQGEAGASLTIPMEAGQIRKGGHIVIKGHPCKVVSVSTSKTGKHGHAKCNFTATDIFTGKKYEDIVPSTHNTTVPNVFRNEYQLLDIQDDGFLSLMDDAGDTKEDIKLPEHPEGFKEQIQSEFDSGKSLAVTVLSAMGHSQVIAIKEDSS 505
            +DY+F+  +AGAS T PMEAGQ++KGG I+IKGHPCKVVS++TSKTGKHGHAKCNFTA DIFT KKYEDIVPS+HN +VP V R EY LLDI D+ F+SLMD+ GDT+EDIKLP  PEGF ++I+++FD+GK LAV+VL A G  Q++A KED S
Sbjct:    4 EDYSFESSDAGASETYPMEAGQVKKGGFIMIKGHPCKVVSIATSKTGKHGHAKCNFTALDIFTNKKYEDIVPSSHNCSVPFVTRAEYTLLDITDEDFVSLMDENGDTREDIKLPLIPEGFGDEIRADFDAGKQLAVSVLKACGIEQIVAKKEDLS 158          
BLAST of mRNA_H-akashiwo_Contig124.3.1 vs. uniprot
Match: A0A8K1CGM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGM3_PYTOL)

HSP 1 Score: 220 bits (561), Expect = 1.180e-67
Identity = 105/155 (67.74%), Postives = 127/155 (81.94%), Query Frame = 2
Query:   41 DDYNFDQGEAGASLTIPMEAGQIRKGGHIVIKGHPCKVVSVSTSKTGKHGHAKCNFTATDIFTGKKYEDIVPSTHNTTVPNVFRNEYQLLDIQDDGFLSLMDDAGDTKEDIKLPEHPEGFKEQIQSEFDSGKSLAVTVLSAMGHSQVIAIKEDSS 505
            DDY F+  +AGAS T PMEAGQI+K G I+IKGHPCKVV+VSTSKTGKHGHAKCNFTA DIFT KK EDIVPSTH T+VP V R EY LLDI +D F+SLMD++GDT+ED+KLP +P+GF  +I+S+F+ GK L VTVL A G  Q+I+ KED++
Sbjct:    3 DDYTFESTDAGASETYPMEAGQIKKNGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVSRKEYTLLDISEDDFVSLMDESGDTREDVKLPSYPDGFANEIRSDFEDGKQLVVTVLKACGTEQIISKKEDTT 157          
BLAST of mRNA_H-akashiwo_Contig124.3.1 vs. uniprot
Match: A0A5D6XTX1_9STRA (Eukaryotic translation initiation factor 5A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTX1_9STRA)

HSP 1 Score: 219 bits (558), Expect = 3.340e-67
Identity = 107/155 (69.03%), Postives = 126/155 (81.29%), Query Frame = 2
Query:   41 DDYNFDQGEAGASLTIPMEAGQIRKGGHIVIKGHPCKVVSVSTSKTGKHGHAKCNFTATDIFTGKKYEDIVPSTHNTTVPNVFRNEYQLLDIQDDGFLSLMDDAGDTKEDIKLPEHPEGFKEQIQSEFDSGKSLAVTVLSAMGHSQVIAIKEDSS 505
            +DY F+  +AGAS T P EAGQIRKGG I+IKGHPCKVVSVSTSKTGKHGHAKCNFTA DIFT KK EDIVPSTH T+VP V R EY LLDI DD F++LMDD GDT++DIKLP  P+ F ++I+++FDSGK L VTVL A G  Q+I+ KED++
Sbjct:    4 EDYTFESTDAGASDTYPCEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVARAEYTLLDISDDDFVTLMDDGGDTRDDIKLPTFPDNFADEIRADFDSGKQLVVTVLKACGIEQIISKKEDTT 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig124.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UU65_9STRA6.850e-7973.91Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A835Z7R2_9STRA6.920e-7269.51Eukaryotic translation initiation factor 5A n=2 Ta... [more]
D8LBS0_ECTSI2.830e-7168.48eIF-5a domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KDL5_9PHAE9.200e-7067.88eIF-5a domain-containing protein n=1 Tax=Ectocarpu... [more]
K3WUI8_GLOUD5.240e-6970.97Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A485LC56_9STRA7.660e-6968.63Eukaryotic translation initiation factor 5A n=2 Ta... [more]
A0A067C6X2_SAPPC2.960e-6867.74Eukaryotic translation initiation factor 5A n=4 Ta... [more]
A0A024UN82_9STRA8.930e-6868.39Eukaryotic translation initiation factor 5A n=4 Ta... [more]
A0A8K1CGM3_PYTOL1.180e-6767.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XTX1_9STRA3.340e-6769.03Eukaryotic translation initiation factor 5A n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig124contigH-akashiwo_Contig124:560613..561817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBS0
Preferred nameEIF5A2
PFAMsEFP_N,eIF-5a
Model size1205
Max annot lvl2759|Eukaryota
KEGG koko:K03263,ko:K10447
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002119,GO:0002164,GO:0002181,GO:0002182,GO:0002184,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003746,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005642,GO:0005643,GO:0005737,GO:0005739,GO:0005777,GO:0005783,GO:0005789,GO:0005829,GO:0005840,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006413,GO:0006414,GO:0006415,GO:0006417,GO:0006446,GO:0006448,GO:0006449,GO:0006452,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006873,GO:0006874,GO:0006875,GO:0006886,GO:0006913,GO:0006915,GO:0007204,GO:0007275,GO:0007276,GO:0007283,GO:0007548,GO:0007568,GO:0008079,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0008360,GO:0008406,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010509,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010608,GO:0010628,GO:0010660,GO:0010661,GO:0010662,GO:0010663,GO:0010665,GO:0010666,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0017069,GO:0017070,GO:0019222,GO:0019538,GO:0019725,GO:0019953,GO:0022411,GO:0022414,GO:0022603,GO:0022604,GO:0022626,GO:0030003,GO:0030425,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031503,GO:0031967,GO:0031975,GO:0031984,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032984,GO:0032991,GO:0033036,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0035262,GO:0036477,GO:0042127,GO:0042175,GO:0042221,GO:0042579,GO:0042592,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043243,GO:0043244,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044877,GO:0045137,GO:0045138,GO:0045184,GO:0045595,GO:0045597,GO:0045727,GO:0045787,GO:0045901,GO:0045905,GO:0045948,GO:0046661,GO:0046907,GO:0047485,GO:0048232,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051028,GO:0051094,GO:0051128,GO:0051130,GO:0051147,GO:0051149,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051302,GO:0051480,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060255,GO:0060491,GO:0060548,GO:0061458,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072503,GO:0072507,GO:0080090,GO:0090068,GO:0090342,GO:0090343,GO:0090598,GO:0097066,GO:0097067,GO:0097159,GO:0097447,GO:0097458,GO:0098589,GO:0098771,GO:0098805,GO:0098827,GO:0120025,GO:0120038,GO:1900247,GO:1900249,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903270,GO:1903272,GO:1990904,GO:2000112,GO:2000377,GO:2000379,GO:2000765,GO:2000767
Exons1
Evalue1.06e-74
EggNOG OGsCOG0231@1|root,KOG3271@2759|Eukaryota
Descriptioneukaryotic translation initiation factor
Cds size495
COG categoryJ
BRITEko00000,ko00001,ko03012,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387129.069017-UTR-H-akashiwo_Contig124:560612..5606251681387129.069017-UTR-H-akashiwo_Contig124:560612..560625Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig124 560613..560625 +
1681387129.0901694-UTR-H-akashiwo_Contig124:561120..5618171681387129.0901694-UTR-H-akashiwo_Contig124:561120..561817Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig124 561121..561817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387129.0811973-CDS-H-akashiwo_Contig124:560625..5611201681387129.0811973-CDS-H-akashiwo_Contig124:560625..561120Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig124 560626..561120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig124.3.1prot_H-akashiwo_Contig124.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig124 560626..561120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig124.3.1

>prot_H-akashiwo_Contig124.3.1 ID=prot_H-akashiwo_Contig124.3.1|Name=mRNA_H-akashiwo_Contig124.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=165bp
MAEETAATLDDYNFDQGEAGASLTIPMEAGQIRKGGHIVIKGHPCKVVSV
STSKTGKHGHAKCNFTATDIFTGKKYEDIVPSTHNTTVPNVFRNEYQLLD
IQDDGFLSLMDDAGDTKEDIKLPEHPEGFKEQIQSEFDSGKSLAVTVLSA
MGHSQVIAIKEDSS*
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mRNA from alignment at H-akashiwo_Contig124:560613..561817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig124.3.1 ID=mRNA_H-akashiwo_Contig124.3.1|Name=mRNA_H-akashiwo_Contig124.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1205bp|location=Sequence derived from alignment at H-akashiwo_Contig124:560613..561817+ (Heterosigma akashiwo CCMP452)
GTTGTCTAGCACAATGGCCGAGGAAACCGCCGCTACTCTCGATGATTATA ACTTCGATCAGGGTGAGGCTGGGGCCTCCCTGACCATCCCTATGGAGGCT GGTCAGATCAGAAAGGGCGGTCACATCGTGATCAAGGGTCACCCTTGCAA GGTGGTCAGCGTGTCTACCTCCAAGACCGGAAAGCACGGTCACGCCAAGT GCAACTTCACTGCCACTGACATTTTCACTGGCAAGAAGTACGAGGATATT GTGCCTTCCACTCACAACACCACAGTCCCTAATGTTTTCAGAAACGAATA CCAGCTTCTCGATATTCAGGACGACGGTTTCCTCTCTCTGATGGACGATG CTGGAGACACCAAGGAGGACATCAAGCTCCCTGAGCATCCTGAGGGTTTC AAGGAACAGATTCAGAGTGAATTCGATTCCGGCAAGTCACTCGCTGTCAC CGTGCTCTCTGCCATGGGCCACAGCCAGGTCATCGCCATCAAGGAGGATT CTTCCTAAATTTTCTTGGAACAACCATAAACCCCTTCATGCTGACTTTGC AAAGGGCGTGTTGCTCTTCCGCCCAACTTAAGTATGGTGATCGAAGCGGG TACCGTCAGTTCAGAAGAGCACCCCGACACTCAATTAAAAACCTTCACGC GGTTTTCCGGCAGGCCCTGATAGAAGTTGAATTCTTAAGCCTAGGGGACT CGAAGACCTGCGGGCGTGAAGCGTGCGGTCTGTTGTCCAAGGTTCAGTTT TAAGTGCCCTCAATGAAGTGTTCATACGGGATTCTTGAAGCTATATTTTT GGCTTGGAGGTTTCATGATGCCTCTGCTGCCAAATCAAATAATTTTGTAA TAAAAATTAAATATAAGAAAATTAGATCAATTGATTTCAATGTATGCCTC TTCCCCAATGGAGCCCCACCTGATTCGATTTTCAACCAGGGGGGCGGAAC GAAAGGGCTACTGCTCAGTCTGGTCTGACAAAATATGCATGTGTTGTTCT GTTGCTTCTTCATTTTTTTGCAGACAGGTGACCATCACACATTGAAGAAA AGGAGCTGGAGAGCATGGTAGGTGTTTTCCTTTGTGCGACCAAACAAGAA CATGGCTGTGTATACTATGTGCGTACGACTGGACATCATAATCCTTTTGT AGTCATACACTGTTATGCACCAACTTCATATGATGGGGGGTATGGTGTTG GTGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig124:560613..561817+

>mRNA_H-akashiwo_Contig124.3.1 ID=mRNA_H-akashiwo_Contig124.3.1|Name=mRNA_H-akashiwo_Contig124.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=495bp|location=Sequence derived from alignment at H-akashiwo_Contig124:560613..561817+ (Heterosigma akashiwo CCMP452)
ATGGCCGAGGAAACCGCCGCTACTCTCGATGATTATAACTTCGATCAGGG
TGAGGCTGGGGCCTCCCTGACCATCCCTATGGAGGCTGGTCAGATCAGAA
AGGGCGGTCACATCGTGATCAAGGGTCACCCTTGCAAGGTGGTCAGCGTG
TCTACCTCCAAGACCGGAAAGCACGGTCACGCCAAGTGCAACTTCACTGC
CACTGACATTTTCACTGGCAAGAAGTACGAGGATATTGTGCCTTCCACTC
ACAACACCACAGTCCCTAATGTTTTCAGAAACGAATACCAGCTTCTCGAT
ATTCAGGACGACGGTTTCCTCTCTCTGATGGACGATGCTGGAGACACCAA
GGAGGACATCAAGCTCCCTGAGCATCCTGAGGGTTTCAAGGAACAGATTC
AGAGTGAATTCGATTCCGGCAAGTCACTCGCTGTCACCGTGCTCTCTGCC
ATGGGCCACAGCCAGGTCATCGCCATCAAGGAGGATTCTTCCTAA
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