mRNA_H-akashiwo_Contig124.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig124.1.1
Unique NamemRNA_H-akashiwo_Contig124.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig124.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig124contigH-akashiwo_Contig124:74542..74796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog10224.XP_002740390.2
PFAMsFilamin,NHL,zf-B_box,zf-RING_2,zf-RING_UBOX
Model size168
Max annot lvl33208|Metazoa
KEGG koko:K11997,ko:K12021,ko:K12035
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue0.000204
EggNOG OGsKOG2177@1|root,KOG2177@2759|Eukaryota,38EA3@33154|Opisthokonta,3BFJH@33208|Metazoa,3CRTV@33213|Bilateria
EC2.3.2.27
DescriptionTripartite motif-containing protein
Cds size156
COG categoryO
BRITEko00000,ko00001,ko01000,ko03019,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387129.0201123-CDS-H-akashiwo_Contig124:74541..746371681387129.0201123-CDS-H-akashiwo_Contig124:74541..74637Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig124 74542..74637 -
1681387129.03065-CDS-H-akashiwo_Contig124:74724..747841681387129.03065-CDS-H-akashiwo_Contig124:74724..74784Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig124 74725..74784 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387129.0390937-UTR-H-akashiwo_Contig124:74784..747961681387129.0390937-UTR-H-akashiwo_Contig124:74784..74796Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig124 74785..74796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig124.1.1prot_H-akashiwo_Contig124.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig124 74542..74784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig124.1.1

>prot_H-akashiwo_Contig124.1.1 ID=prot_H-akashiwo_Contig124.1.1|Name=mRNA_H-akashiwo_Contig124.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
MLGRDYSLVGRTVNWRAGREGKAEGEFASPVAIAVNPRGDVAVVDRLNHR
IQ
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mRNA from alignment at H-akashiwo_Contig124:74542..74796-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig124.1.1 ID=mRNA_H-akashiwo_Contig124.1.1|Name=mRNA_H-akashiwo_Contig124.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=255bp|location=Sequence derived from alignment at H-akashiwo_Contig124:74542..74796- (Heterosigma akashiwo CCMP452)
GGATGATCCAAGATGCTGGGCAGAGACTACAGTTTGGTCGGACGAACGGT
AAACTGGAGAGCAGGCCGAGAGGTAAGTTCGTCAATTTGAATCGTGAACT
GATGCGCACTTCATACCTTGCCTCATTCTCTACGTATTTTTCTACTATGC
TGACAACAGGGGAAGGCGGAAGGAGAGTTTGCATCGCCAGTTGCCATCGC
TGTCAACCCCCGTGGAGATGTGGCAGTGGTTGATAGACTGAATCATAGAA
TACAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig124:74542..74796-

>mRNA_H-akashiwo_Contig124.1.1 ID=mRNA_H-akashiwo_Contig124.1.1|Name=mRNA_H-akashiwo_Contig124.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig124:74542..74796- (Heterosigma akashiwo CCMP452)
ATGCTGGGCAGAGACTACAGTTTGGTCGGACGAACGGTAAACTGGAGAGC
AGGCCGAGAGGGGAAGGCGGAAGGAGAGTTTGCATCGCCAGTTGCCATCG
CTGTCAACCCCCGTGGAGATGTGGCAGTGGTTGATAGACTGAATCATAGA
ATACAG
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