mRNA_H-akashiwo_Contig947.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig947.12.1
Unique NamemRNA_H-akashiwo_Contig947.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig947.12.1 vs. uniprot
Match: A0A7S2V551_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V551_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.000e-44
Identity = 80/154 (51.95%), Postives = 114/154 (74.03%), Query Frame = 1
Query:   16 LETSEIASSVPLQICLSFNVLLSLVFFSFELLIVINKLYHYEFRSPLHELLVIPIFLILLGSDTSRLYFAYQGNLRERIPSLIAFLMITVFPEVPVLVYLALVQELIFPFDQIMALIIIIICCMEFILGYRCVRSLIQHQTARFFRLCQEEEIR 477
            +ET  +ASSV L I L  + ++S+V+F     ++++KL  ++F SPLH+LL+IP F+ILL  DTSR YF +QGNL+ER+P +IAFLMIT FP   V+ Y+  VQE+++PFD ++  + I++  +EF  GYRCV+ LI  QTARFFRLCQEEE++
Sbjct:   29 IETYTVASSVSLHILLYLDSMVSIVYFFLGGSLILHKLSSFDFVSPLHQLLLIPCFIILLICDTSRFYFGFQGNLKERVPQVIAFLMITFFPTFFVMAYMTFVQEVLYPFDVVIGWMFIMLMLLEFYFGYRCVKRLINRQTARFFRLCQEEELK 182          
BLAST of mRNA_H-akashiwo_Contig947.12.1 vs. uniprot
Match: D8LQL2_ECTSI (Similar to putative transmembrane protein 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 4.420e-28
Identity = 65/148 (43.92%), Postives = 97/148 (65.54%), Query Frame = 1
Query:   25 SEIASSVPLQICLSFNVLLSLVFFSFELLIVINKLYHYEFRSPLHELLVIPIFLILLGSDTSRLYFAYQGNLRERIPSLIAFLMITVFPEVPVLVYLALVQELIFPFDQIMALIIIIICCMEFILGYRCVRSLIQHQTARFFRLCQEE 468
            SEI+SS+ LQI + +N LLSL++F     +VI KLY+Y F S L   ++ PIF+    ++  R YF Y+GN++E +P + AFL++TVFP++  L +LA  QE  FP D I+  I I     E I+GY  ++++I  +TA+FFR+ QEE
Sbjct:   42 SEISSSLSLQILIYYNGLLSLIYFVLGGGLVIEKLYNYRFESELQRTVLAPIFISWAIAEVHRFYFGYKGNIKEMVPHMCAFLLMTVFPQMFCLAFLAFFQEHQFPVDPILGAIHIAFLASETIVGYNGIKAIINKRTAQFFRVAQEE 189          
BLAST of mRNA_H-akashiwo_Contig947.12.1 vs. uniprot
Match: F0YGR8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGR8_AURAN)

HSP 1 Score: 107 bits (266), Expect = 1.230e-26
Identity = 52/122 (42.62%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  118 INKLYHYEFRSPLHELLVIPIFLILLGSDTSRLYFAYQGNLRERIPSLIAFLMITVFPEVPVLVYLALVQELIFPFDQIMALIIIIICCMEFILGYRCVRSLIQHQTARFFRLCQEEEIRNL 483
            +NK+Y+YEF++ + ++L +PIFL+   ++ +R+   Y GN++ER+P + AFL++T+FP+V  + + A++Q+ +FPFD+    I+I    +E  +G   +++LIQ QTA+FFRLCQEEEIR +
Sbjct:   12 LNKIYNYEFQNGILKILTLPIFLLWSCTELARVALGYIGNIKERVPMISAFLLLTMFPQVVAVFFFAILQDPVFPFDRAAGSIMIFYLVIELFVGRFTLKTLIQRQTAQFFRLCQEEEIRRM 133          
BLAST of mRNA_H-akashiwo_Contig947.12.1 vs. uniprot
Match: A0A7S2R395_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R395_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.530e-26
Identity = 61/153 (39.87%), Postives = 92/153 (60.13%), Query Frame = 1
Query:   16 LETSEIASSVPLQICLSFNVLLSLVFFSFELLIVINKLYHYEFRSPLHELLVIPIFLILLGSDTSRLYFAYQGNLRERIPSLIAFLMITVFPEVPVLVYLALVQELIFPFDQIMALIIIIICCMEFILGYRCVRSLIQHQTARFFRLCQEEEI 474
            L T E  +SVPLQICL +N+ LSL+FF  E  ++  KL  +EF S L+   VIP F     +D  RL++ Y GNL E++P   AF +ITVFP+VP +++L   QE  +P ++I+  I++I    E   G   +R L+  Q + F+RL  + ++
Sbjct:   15 LATEEAIASVPLQICLFYNMFLSLLFFVMEACLLAYKLQEFEFVSQLYRAFVIPCFFFWSLADPPRLFYGYSGNLTEQVPHSSAFFLITVFPQVPGVLFLTFAQEHSYPIERILGSIVLIFLFAEIYFGSSALRRLMAKQMSHFYRLQNQHDM 167          
BLAST of mRNA_H-akashiwo_Contig947.12.1 vs. uniprot
Match: A0A836CA77_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA77_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.510e-25
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 1
Query:   25 SEIASSVPLQICLSFNVLLSLVFFSFELLIVINKLYHYEFRSPLHELLVIPIFLILLGSDTSRLYFAYQGNLRERIPSLIAFLMITVFPEVPVLVYLALVQELIFPFDQIMALIIIIICCMEFILGYRCVRSLIQHQTARFFRLCQEE 468
            SE +SS+P Q+ + FNV+ S+++F  E  +VI K+  Y F SPL  ++  P F+I    +  RLYF Y GN+ E +P + AF+++TVFP+  V++YL   QE +FP D  M   ++ +   E + G   VRS+ + +TA+F R+ Q E
Sbjct:    4 SETSSSLPAQVLMYFNVMFSIIYFIMEGSLVIMKMSQYVFDSPLQRIVCAPAFMIWALVEVFRLYFGYSGNIEEMVPQMTAFVLMTVFPQSLVVLYLTTFQEFVFPADAAMGGTMLALLAAETVAGAGAVRSIARKRTAQFHRMVQTE 151          
BLAST of mRNA_H-akashiwo_Contig947.12.1 vs. uniprot
Match: A0A8J2SKP3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKP3_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 6.260e-22
Identity = 54/156 (34.62%), Postives = 99/156 (63.46%), Query Frame = 1
Query:   16 LETSEIASSVPLQICLSFNVLLSLVFFSFELLIVINKLYHYEFRSPLHELLVIPIFLILLGSDTSRLYFAYQGNLRERIPSLIAFLMITVFPEVPVLVYLALVQELIFPFDQIMALIIIIICCMEFILGYRCVRSLIQHQTARFFRLCQEEEIRNL 483
            ++  EI SS+ LQ  + +  + SL++F+     ++NKL +Y+F++ +  +L +PIF +    +  R+   Y GNL E++P + AFL++T+FP++  +++L  +Q+ +FPFD     ++I+    E  +G    ++LI+ QTA+FFRLCQEEE+  +
Sbjct:    7 IDMVEIKSSLGLQQVIFYQGMFSLLYFAICGGCLLNKLQNYKFQNSILFILTLPIFSLWCCIEIVRIGLGYIGNLLEKVPMISAFLLLTIFPQLVAILFLTFLQDPVFPFDTAAGSMMILFLLSELYVGRLTFKTLIERQTAQFFRLCQEEEMERI 162          
BLAST of mRNA_H-akashiwo_Contig947.12.1 vs. uniprot
Match: A0A7S2LPI5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPI5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.720e-20
Identity = 54/146 (36.99%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   37 SSVPLQICLSFNVLLSLVFFSFELLIVINKLYHYEFRSPLHELLVIPIFLILLGSDTSRLYFAYQGNLRERIPSLIAFLMITVFPEVPVLVYLALVQELIFPFDQIMALIIIIICCMEFILGYRCVRSLIQHQTARFFRLCQEEEI 474
            SS+PL IC+ FN  LS+ F      + + K     F S L  +L++P F I +G +  R++    GN  E +  L  FL++T+FP  P+++Y +L QE+IFP D++   I+I + C E I+  R +R LIQ   A F + C+ +EI
Sbjct:   21 SSLPLAICIYFNSYLSVAFGILIGTLCLGKFRWLRFESELQRVLLLPFFAIWMGVEALRVHIGRNGNKYENVQDLSRFLLLTIFPLFPLVLYFSLYQEIIFPCDKVFGGIMIAVLCFEVIVSSRTLRKLIQKHAAAFHQSCRAKEI 166          
BLAST of mRNA_H-akashiwo_Contig947.12.1 vs. uniprot
Match: A0A7S2WEQ3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WEQ3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.200e-17
Identity = 38/97 (39.18%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  181 FLILLGSDTSRLYFAYQGNLRERIPSLIAFLMITVFPEVPVLVYLALVQELIFPFDQIMALIIIIICCMEFILGYRCVRSLIQHQTARFFRLCQEEE 471
            F +   S+  RL+F Y GNL+E++P L  F+++++FP++P L+YL  +QEL  PF++ M+  +++  C E ++GY  ++SL++ QT  +F+L  EEE
Sbjct:    8 FSVWASSEGFRLWFGYTGNLQEKLPQLSVFMLLSLFPQLPCLIYLLHLQELQLPFERAMSASLVVFVCFELLIGYMTIKSLVKKQTQSYFQLLVEEE 104          
BLAST of mRNA_H-akashiwo_Contig947.12.1 vs. uniprot
Match: A0A2R5GIF6_9STRA (Transmembrane protein 17 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIF6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.590e-17
Identity = 47/146 (32.19%), Postives = 89/146 (60.96%), Query Frame = 1
Query:   34 ASSVPLQICLSFNVLLSLVFFSFELLIVINKLYHYEFRSPLHELLVIPIFLILLGSDTSRLYFAYQGNLRERIPSLIAFLMITVFPEVPVLVYLALVQELIFPFDQIMALIIIIICCMEFILGYRCVRSLIQHQTARFFRLCQEEE 471
            ++S  LQ+CL FNV +S +F   + L +  KL  +E      ++L    F +   S+  RL+F + GNL+E++P +  FL++++FP++P L+YL  +Q+L FP ++I+   +     +E ++GY  +++L++ QT  + RL  E++
Sbjct:   21 STSAALQVCLQFNVYMSAIFLVLQSLALTEKLRTFEL-DVFGKVLAPLTFGVWCASEVFRLWFGFTGNLQEKLPQMSVFLLLSLFPQLPCLLYLMNLQDLQFPVERILGGFMFTFTGVELVMGYHAMQALVKKQTTSYSRLVSEDK 165          
BLAST of mRNA_H-akashiwo_Contig947.12.1 vs. uniprot
Match: A0A812PWT7_9DINO (Tmem17a protein n=2 Tax=Sar TaxID=2698737 RepID=A0A812PWT7_9DINO)

HSP 1 Score: 71.2 bits (173), Expect = 2.480e-12
Identity = 38/101 (37.62%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  169 VIPIFL-ILLGSDTSRLYFAYQGNLRERIPSLIAFLMITVFPEVPVLVYLALVQELIFPFDQIMALIIIIICCMEFILGYRCVRSLIQHQTARFFRLCQEE 468
            ++PIF  I +  +  RL+  + GNLRER+P L AF+++TVFP++P+++ L  +     P D + A   ++   +E ++ +R VR+L++ QTA FFR CQ +
Sbjct:   13 IVPIFSGIWVLVEAIRLWLGFSGNLRERVPELAAFVLLTVFPQIPIMLLLGFIAVDRVPADAVTAAPQLVFLLLEAVVSFRTVRALMRKQTAEFFRACQTD 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig947.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V551_9STRA3.000e-4451.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LQL2_ECTSI4.420e-2843.92Similar to putative transmembrane protein 17 n=1 T... [more]
F0YGR8_AURAN1.230e-2642.62Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2R395_9STRA7.530e-2639.87Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CA77_9STRA4.510e-2539.19Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A8J2SKP3_9STRA6.260e-2234.62Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2LPI5_9STRA3.720e-2036.99Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2WEQ3_9STRA2.200e-1739.18Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5GIF6_9STRA5.590e-1732.19Transmembrane protein 17 n=1 Tax=Hondaea fermental... [more]
A0A812PWT7_9DINO2.480e-1237.62Tmem17a protein n=2 Tax=Sar TaxID=2698737 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig947contigH-akashiwo_Contig947:245830..246312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQL2
PFAMsTransmemb_17
Model size483
Max annot lvl2759|Eukaryota
KEGG koko:K19384
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.25e-29
EggNOG OGs2CZF2@1|root,2SA3U@2759|Eukaryota
DescriptionPredicted membrane protein
Cds size483
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388054.3824227-CDS-H-akashiwo_Contig947:245829..2463121681388054.3824227-CDS-H-akashiwo_Contig947:245829..246312Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig947 245830..246312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig947.12.1prot_H-akashiwo_Contig947.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig947 245830..246312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig947.12.1

>prot_H-akashiwo_Contig947.12.1 ID=prot_H-akashiwo_Contig947.12.1|Name=mRNA_H-akashiwo_Contig947.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=161bp
HDIPVLETSEIASSVPLQICLSFNVLLSLVFFSFELLIVINKLYHYEFRS
PLHELLVIPIFLILLGSDTSRLYFAYQGNLRERIPSLIAFLMITVFPEVP
VLVYLALVQELIFPFDQIMALIIIIICCMEFILGYRCVRSLIQHQTARFF
RLCQEEEIRNL
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mRNA from alignment at H-akashiwo_Contig947:245830..246312-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig947.12.1 ID=mRNA_H-akashiwo_Contig947.12.1|Name=mRNA_H-akashiwo_Contig947.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=483bp|location=Sequence derived from alignment at H-akashiwo_Contig947:245830..246312- (Heterosigma akashiwo CCMP452)
CACGATATTCCAGTTCTTGAAACATCTGAGATAGCTTCTTCCGTACCACT TCAAATTTGTCTAAGTTTCAACGTGCTCCTGTCTTTGGTTTTTTTCAGTT TTGAGCTGTTGATTGTGATAAACAAGTTGTACCACTATGAGTTCAGGTCG CCCTTGCATGAACTACTTGTTATCCCAATATTTTTGATTCTACTGGGTTC AGATACCAGTCGACTATATTTTGCTTATCAGGGAAACCTAAGGGAGAGAA TTCCCTCTCTGATTGCTTTTCTTATGATCACCGTTTTCCCTGAAGTTCCT GTTCTAGTCTATCTTGCGCTTGTTCAAGAGCTAATTTTCCCCTTTGACCA AATCATGGCCCTCATCATCATCATCATATGCTGCATGGAGTTCATTCTGG GTTATAGGTGCGTTCGGTCACTCATTCAGCACCAAACTGCCAGATTTTTC AGACTGTGCCAAGAAGAAGAAATTAGGAATCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig947:245830..246312-

>mRNA_H-akashiwo_Contig947.12.1 ID=mRNA_H-akashiwo_Contig947.12.1|Name=mRNA_H-akashiwo_Contig947.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=483bp|location=Sequence derived from alignment at H-akashiwo_Contig947:245830..246312- (Heterosigma akashiwo CCMP452)
CACGATATTCCAGTTCTTGAAACATCTGAGATAGCTTCTTCCGTACCACT
TCAAATTTGTCTAAGTTTCAACGTGCTCCTGTCTTTGGTTTTTTTCAGTT
TTGAGCTGTTGATTGTGATAAACAAGTTGTACCACTATGAGTTCAGGTCG
CCCTTGCATGAACTACTTGTTATCCCAATATTTTTGATTCTACTGGGTTC
AGATACCAGTCGACTATATTTTGCTTATCAGGGAAACCTAAGGGAGAGAA
TTCCCTCTCTGATTGCTTTTCTTATGATCACCGTTTTCCCTGAAGTTCCT
GTTCTAGTCTATCTTGCGCTTGTTCAAGAGCTAATTTTCCCCTTTGACCA
AATCATGGCCCTCATCATCATCATCATATGCTGCATGGAGTTCATTCTGG
GTTATAGGTGCGTTCGGTCACTCATTCAGCACCAAACTGCCAGATTTTTC
AGACTGTGCCAAGAAGAAGAAATTAGGAATCTG
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