mRNA_H-akashiwo_Contig93.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.11.1
Unique NamemRNA_H-akashiwo_Contig93.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig93.11.1 vs. uniprot
Match: A0A7S3Y6T3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6T3_HETAK)

HSP 1 Score: 299 bits (766), Expect = 2.560e-99
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 
Query:  277 GDHGRRAPGAVRPAARAALGLGGRPGARQPQLALLPALRPRGRGGRGRRSQRRQDGLPDLDRQHHLLPRAHAGALRVPGGGRGGARGGAARRLGGLPRQAGAAGHARVAVLAAGGPADLRAGAAALPAALRVHRAHRVGGHPELLRGALRPDRENTRGKKN 759
            GDHGRRAPGAVRPAARAALGLGGRPGARQPQLALLPALRPRGRGGRGRRSQRRQDGLPDLDRQHHLLPRAHAGALRVPGGGRGGARGGAARRLGGLPRQAGAAGHARVAVLAAGGPADLRAGAAALPAALRVHRAHRVGGHPELLRGALRPDRENTRGKKN
Sbjct:   20 GDHGRRAPGAVRPAARAALGLGGRPGARQPQLALLPALRPRGRGGRGRRSQRRQDGLPDLDRQHHLLPRAHAGALRVPGGGRGGARGGAARRLGGLPRQAGAAGHARVAVLAAGGPADLRAGAAALPAALRVHRAHRVGGHPELLRGALRPDRENTRGKKN 180
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BLAST of mRNA_H-akashiwo_Contig93.11.1 vs. uniprot
Match: A0A7S4DDG0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDG0_HETAK)

HSP 1 Score: 287 bits (735), Expect = 1.010e-91
Identity = 146/219 (66.67%), Postives = 169/219 (77.17%), Query Frame = 2 
Query:   44 LVRTATDAAAISVALVYPLALLVSYNALGMRGWTPAEMAVWLPGDSLRLYSANTAGHPATTALLTSMTSYFLGDVLAQVITDGARPGRFDRLRGLRWASAGALVHASLSSLYFPLSDRAAEAAVGADPSAAKMAFQIWIDNTIYFPVLTLALFVYLAAAAEGPGAGLRGGWAAFRAKLVPLGTRAWRFWPLADLLTFGPVPPPFRLLYVSTVRIVWVAI 700
            L RTATDA+ ++V  V+  A L++YN   MRGWT  EMA  LPGDSL LY+ N AGHPATTALLTSMTSYFLGDVLAQ++T+GARPG FDR RG RWASAGAL+HA  S+LYFPLSDR AE      P   ++AFQIWIDNT+YFP LTL+LF+YLA  +  P   L G    +RAK+VPL +R+WRFWP+ADLLTFGPVPP  RLLYVSTVRI WV I
Sbjct:  170 LFRTATDASVLAVVAVFSFAELLAYNLQRMRGWTLEEMAAHLPGDSLHLYATNAAGHPATTALLTSMTSYFLGDVLAQILTNGARPGTFDRGRGARWASAGALIHAPFSALYFPLSDRVAEELTA--PGPMRIAFQIWIDNTLYFPFLTLSLFLYLALVSREP---LSGALETYRAKIVPLASRSWRFWPIADLLTFGPVPPSLRLLYVSTVRIAWVCI 383
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BLAST of mRNA_H-akashiwo_Contig93.11.1 vs. uniprot
Match: R1DLF1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DLF1_EMIHU)

HSP 1 Score: 77.4 bits (189), Expect = 3.710e-12
Identity = 66/200 (33.00%), Postives = 96/200 (48.00%), Query Frame = 2 
Query:  140 WTPAEMAVW--LPGDSLRLYSANTAGHPATTALLTSMTSYFLGDVLAQVITDGARPGRFDRLRGLRWASAGALVHASL-----SSLYFPLSDRAAEAAVGADPSAAKMAFQIWIDNTIYFPVLTLALFVYLAAAAEGPGAGLRGGWAAFRAKLVPLGTRAWRFWPLADLLTFGP-VPPPFRLLYVSTVRIVWVAIQSSYV 715
            W P  +A+   +P   L  Y+      P  T   TS  SY +GD++AQ +    R G  D  R  R A+ G  +H  L     + L  PL+D   E A GA      +  +I +D T +  ++ L L+  L     G GA     +A  R  LVP    +WRFWP   L+++ P VP  F+LL++ T+ I+WVA  S+ V
Sbjct:  151 WLPESLALAQSIPAGFLADYAQAAELAPLLTMACTSCLSYAVGDLVAQRVEGRWRVGLLDLRRCARNAALGFGLHGPLVFWWINVLEGPLADLLGEPA-GAAERWGGLLLKIALDQTFFSALINL-LYASLNGLLSGDGA--VEAFARARRVLVPAMVSSWRFWPAVQLISYSPLVPLDFKLLWIDTMEILWVAYLSATV 346
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BLAST of mRNA_H-akashiwo_Contig93.11.1 vs. uniprot
Match: A0A7S0J675_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J675_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 7.950e-6
Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 2 
Query:  416 GADPSAAKMAFQIWIDNTIYFPVLTLALFVYLAAAAEGPGAGLRGGWAAFRAKLVPLGTRAWRFWPLADLLTFGP-VPPPFRLLYVSTVRIVWVAIQSSYVARS 724
            GA    + +  +I +D T +  ++ L L+  L     G  A     +A  R  LVP    +WRFWP   L+++ P VP  F+LL++ T+ I+WVA  S+ V R+
Sbjct:   19 GASGRWSALLLKILLDQTFFSALINL-LYASLNGVLSGQPA--HEAFARARRVLVPAMVSSWRFWPAVQLISYSPLVPVNFKLLWIDTMEILWVAYLSATVNRT 119
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BLAST of mRNA_H-akashiwo_Contig93.11.1 vs. uniprot
Match: UPI001A9E2AAD (protein Mpv17-like n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001A9E2AAD)

HSP 1 Score: 55.8 bits (133), Expect = 1.020e-5
Identity = 41/169 (24.26%), Postives = 70/169 (41.42%), Query Frame = 2 
Query:  185 RLYSANTAGHPATTALLTSMTSYFLGDVLAQVITDGARPGRFDRLRGLRWASAGALVHASLSSLYFPLSDRAAEAAVGADPSAAKMAFQIWIDNTIYFPVLTLALFVYLAAAAEGPGAGLRGGWAAFRAKLVPLGTRAWRFWPLADLLTFGPVPPPFRLLYVSTVRIVW 691
            R+Y      HPA T +LT+ T     D++ Q + +  R    D  R +R+   G          +  L D+    + G   +  K+     +   ++ PV      V+L          +       R K   +    ++ WP+A ++ F  VPPP+RLLY++ V +VW
Sbjct:    6 RIYDRLLQTHPAKTQILTTATVMLSSDLMTQKLVE--RRDSIDAQRAVRFFLVGLAYSGPTQRTWLILVDKRLVRSTGPIATVKKVV----LGQLVFSPVSVFGFLVFLGVLQGRTRVDIERN---IREKYSTIMKTFYKLWPVAQVINFQYVPPPYRLLYMNCVSLVW 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S3Y6T3_HETAK2.560e-99100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DDG0_HETAK1.010e-9166.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
R1DLF1_EMIHU3.710e-1233.00Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S0J675_9EUKA7.950e-633.65Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
UPI001A9E2AAD1.020e-524.26protein Mpv17-like n=1 Tax=Ixodes scapularis TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:646431..649047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0RWU0
PFAMsMpv17_PMP22
Model size996
Max annot lvl2836|Bacillariophyta
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.91e-18
EggNOG OGsKOG1944@1|root,KOG1944@2759|Eukaryota,2XB13@2836|Bacillariophyta
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-16_001670.1
DescriptionBelongs to the peroxisomal membrane protein PXMP2 4 family
Cds size849
COG categoryS
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.11.1prot_H-akashiwo_Contig93.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 646448..648917 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388047.1060514-UTR-H-akashiwo_Contig93:646430..6464471681388047.1060514-UTR-H-akashiwo_Contig93:646430..646447Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 646431..646447 -
1681388047.1612325-UTR-H-akashiwo_Contig93:648917..6490471681388047.1612325-UTR-H-akashiwo_Contig93:648917..649047Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 648918..649047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388047.1208718-CDS-H-akashiwo_Contig93:646447..6465671681388047.1208718-CDS-H-akashiwo_Contig93:646447..646567Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 646448..646567 -
1681388047.1314404-CDS-H-akashiwo_Contig93:646799..6469221681388047.1314404-CDS-H-akashiwo_Contig93:646799..646922Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 646800..646922 -
1681388047.141178-CDS-H-akashiwo_Contig93:647767..6482261681388047.141178-CDS-H-akashiwo_Contig93:647767..648226Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 647768..648226 -
1681388047.15116-CDS-H-akashiwo_Contig93:648770..6489171681388047.15116-CDS-H-akashiwo_Contig93:648770..648917Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 648771..648917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.11.1

>prot_H-akashiwo_Contig93.11.1 ID=prot_H-akashiwo_Contig93.11.1|Name=mRNA_H-akashiwo_Contig93.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=283bp
MRGWTPAEMAVWLPGDSLRLYSANTAGHPATTALLTSMTSYFLGDVLAQV
ITDGARPGRFDRLRGLRWASAGALVHASLSSLYFPLSDRAAEAAVGADPS
AAKMAFQIWIDNTIYFPVLTLALFVYLAAAAEGPGAGLRGGWAAFRAKLV
PLGTRAWRFWPLADLLTFGPVPPPFRLLYVSTVRIVWVAIQSSYVARSAQ
IEKTLEERKTEPIADSQNHSSLETTKKIDEHFEGLLEQAKEPTIWERPPF
SLIPSADSPEAFYAFMAYFAASSALCLYYLAQ*
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mRNA from alignment at H-akashiwo_Contig93:646431..649047-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.11.1 ID=mRNA_H-akashiwo_Contig93.11.1|Name=mRNA_H-akashiwo_Contig93.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2617bp|location=Sequence derived from alignment at H-akashiwo_Contig93:646431..649047- (Heterosigma akashiwo CCMP452)
GTCGCCGGGGTTCCTGGGCCTGAGCGGGGCGGAGTGGGGGCAGCTGGTCC
GCACGGCCACCGACGCGGCGGCCATCTCGGTGGCGCTGGTGTACCCGCTG
GCGCTGCTGGTCTCCTACAACGCGCTGGGCATGCGCGGGTGGACCCCGGC
CGAGATGGCGGTCTGGCTGCCGGGGGACTCCCTCAGGCTGTACAGCGCCA
ACACGGCGGGCCACCCGGCCACCACCGCGCTGCTCACCTCCATGACCTCC
TACTTCCTCGGGGACGTGCTCGCGCAGGTGCCCTCCGTTGTACAGTTCAC
GAATGTTTGTTGTATGTACATGCATAACTGCAGCAAGCTCCAATATGTCA
CAGAGCTGGATTCCGCTCCCTTGAAACATACAAAAGGTCGTTCAGGGTCA
GGCTACCAGAAATATGGAACAATCTCAATCACGACGTACTTCAACAACAA
CACATAGAAGAATTCATGCCAATTAGGAAGCAGCTTCAAAATCAGATAAA
GATGGGTGGTAGCAGCAGTGTATAAGTTCTGGGTTATCATCTTTCACTTC
ATGTTAAAACGTAGAAAAAAAATACAAAAAATACAAAAACACCGGGGGAT
CTTCTTCTTCTTTAAGTCCAAGGGCTCGGCTCAAGTCAAGTGTGGCTATG
ACCTATTGACGTCATCTGAGAGCGAAATGTTTTGCCCAGATGTAGTGAGT
ACAGAAACCTTCTGCTCCAAAGAGCCCCTGCTGCGTCGCAGGCCTCCCCC
AGCAAGTGGGAGCTGGGCCTTGCCGCTCCGGTGTCCACGGCGCCCGAGTT
CCCTCCCCGCGCCCCCTCCAGGTGATCACGGACGGCGCGCGCCCGGGGCG
GTTCGACCGGCTGCGCGGGCTGCGCTGGGCCTCGGCGGGCGCCCTGGTGC
ACGCCAGCCTCAGCTCGCTCTACTTCCCGCTCTCCGACCGCGCGGCCGAG
GCGGCCGTGGGCGCCGATCCCAGCGCCGCCAAGATGGCCTTCCAGATCTG
GATCGACAACACCATCTACTTCCCCGTGCTCACGCTGGCGCTCTTCGTGT
ACCTGGCGGCGGCCGCGGAGGGGCCCGGGGCGGGGCTGCGCGGCGGCTGG
GCGGCCTTCCGCGCCAAGCTGGTGCCGCTGGGCACGCGCGCGTGGCGGTT
CTGGCCGCTGGCGGACCTGCTGACCTTCGGGCCGGTGCCGCCGCCCTTCC
GGCTGCTCTACGTGTCCACCGTGCGCATCGTGTGGGTGGCCATCCAGAGC
TCCTACGTGGCGCGCTCCGCCCAGATCGAGGTGTGGATGATGATGATGAT
GATGATGATGATCATTTTAGTTTTCAGTCTAGCCTTTCAAACCGCTTTCG
GGGCAGGACCCCTACTAGCCTCTATAAGCAGATCCTTCCACCTCAATCTG
CCATTTCTCAATACCACAACTCAATCATCATAAAAACAGGCAGGGTGGGT
CATATGCCATAATACATGGTTGGTGCATAGATATGGATCACCGGCCCTGC
GCCCTGCTGCCGGGCACTGATGATGTGGTGGCGTTCTCTGGAGTGTTGAG
AAAAAAGGCATGCCGCTCATTAATTATCAAGACACACTATAGCTGGCAGG
GTTTTGTGTGGGTGTGGTTCCTACCAGTACTGCATGCGAAGTGTGGGGAC
AAGCTGGATTCTCATTGTGTGTGTCGGTGTGCTGCTTTTGCATTTTTAGT
AGTTAGTATGGTAACTGGTAGGAAGCAGGGGAAGACAGCATGCAATGATT
TTTGTAATGATCATCATGCTAATCATATATGTGTGACATATGTGTGTGTC
TATGAATTACTAATACCATTCAAGACTGAGAATAGTGGATTTTCTCATCT
GGATGGCTGTGACAATCGGTTTGTGTGGGCTGTGTTTAAGCTGTACCAGG
AGCTGTACTTACGATGGAGTTTTTTATTATTGAGTTTGTGGTGTATTTAC
AACTTCATAGCTTGATGATGATGACATGATGATGATGATGGACTAAGTTT
ACAGCCTTGCCTTTTCGAAAAACATCACTGGTTGAATAGATTCATTGAAT
AGTCACGACTGTATGTTAAATTCGTACTAAAAGTTTCTTCTGCTTTTTTC
TTTCCTGTTCTTGCTCTGTCTGTAGAAAACACTCGAGGAAAGAAAAACAG
AGCCAATTGCAGACTCGCAAAATCACTCGTCTCTTGAGACCACCAAAAAG
ATTGATGAGCACTTTGAAGGTCTTCTGGAGCAGGCCAAGGAACCCACGGT
GTGTTCCTCTTATATTAATGACAATCAAGTCCTTACACAAGTCAATGTTT
GTTTGTTTGGTGCCATGGTTGGTTGTTACAACATAATGCTGCTATTTTTT
CTTTTTTTCCAGCTAATCTGCACAACAACATTCGGTTCAATTTAAGTATT
GATGAACAGACGACTAACAAATATATATTTCTTCGTGTTTATCTACATCA
ACAATGTTTGTGTGCTTTTTCGTCATCCAGATCTGGGAACGGCCACCTTT
TTCATTGATTCCTTCAGCGGACAGCCCAGAGGCTTTTTATGCCTTCATGG
CTTACTTTGCAGCAAGTTCGGCTTTGTGCTTGTATTACCTTGCACAATAA
AAAAAGGAGAAGAAAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:646431..649047-

>mRNA_H-akashiwo_Contig93.11.1 ID=mRNA_H-akashiwo_Contig93.11.1|Name=mRNA_H-akashiwo_Contig93.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=849bp|location=Sequence derived from alignment at H-akashiwo_Contig93:646431..649047- (Heterosigma akashiwo CCMP452)
ATGCGCGGGTGGACCCCGGCCGAGATGGCGGTCTGGCTGCCGGGGGACTC
CCTCAGGCTGTACAGCGCCAACACGGCGGGCCACCCGGCCACCACCGCGC
TGCTCACCTCCATGACCTCCTACTTCCTCGGGGACGTGCTCGCGCAGGTG
ATCACGGACGGCGCGCGCCCGGGGCGGTTCGACCGGCTGCGCGGGCTGCG
CTGGGCCTCGGCGGGCGCCCTGGTGCACGCCAGCCTCAGCTCGCTCTACT
TCCCGCTCTCCGACCGCGCGGCCGAGGCGGCCGTGGGCGCCGATCCCAGC
GCCGCCAAGATGGCCTTCCAGATCTGGATCGACAACACCATCTACTTCCC
CGTGCTCACGCTGGCGCTCTTCGTGTACCTGGCGGCGGCCGCGGAGGGGC
CCGGGGCGGGGCTGCGCGGCGGCTGGGCGGCCTTCCGCGCCAAGCTGGTG
CCGCTGGGCACGCGCGCGTGGCGGTTCTGGCCGCTGGCGGACCTGCTGAC
CTTCGGGCCGGTGCCGCCGCCCTTCCGGCTGCTCTACGTGTCCACCGTGC
GCATCGTGTGGGTGGCCATCCAGAGCTCCTACGTGGCGCGCTCCGCCCAG
ATCGAGAAAACACTCGAGGAAAGAAAAACAGAGCCAATTGCAGACTCGCA
AAATCACTCGTCTCTTGAGACCACCAAAAAGATTGATGAGCACTTTGAAG
GTCTTCTGGAGCAGGCCAAGGAACCCACGATCTGGGAACGGCCACCTTTT
TCATTGATTCCTTCAGCGGACAGCCCAGAGGCTTTTTATGCCTTCATGGC
TTACTTTGCAGCAAGTTCGGCTTTGTGCTTGTATTACCTTGCACAATAA
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