mRNA_H-akashiwo_Contig922.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig922.5.1
Unique NamemRNA_H-akashiwo_Contig922.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig922.5.1 vs. uniprot
Match: A0A835ZH90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH90_9STRA)

HSP 1 Score: 153 bits (387), Expect = 4.390e-44
Identity = 72/174 (41.38%), Postives = 116/174 (66.67%), Query Frame = 1
Query:    1 LTPEKYLLGKLFIERGYDTTLTRTLMQPRFQAPLTKERFQSYTTELVEAVRSGNIEKLQDLKSRGSSMSACNKFGESVLHMAARKGEMKIFAFLMN--SVDNIYITDDQGRTILHDACWSATPNFDVVTMILQHDETLLRATDVRGSTPLAYIKRDNWQQWYEYLDRMKETFWP 516
            + P ++L+  L   RGY T  T   ++ R+    T ++ + Y+ +LV AVR+G+++ L+++ + G SM+ACNKF ESV+HMAAR G  ++  F++    V+++ I+DD GRT LHDACW++ P FD+VT IL H+  +L   D RG TPL Y+K++ W  W+ ++D +K+ +WP
Sbjct:    2 VNPHEFLIATL-AARGYPTR-TVVALESRYATKPTAKQVEDYSIDLVNAVRAGDLDTLREMHAAGCSMNACNKFAESVVHMAARIGAREVMEFMIECTGVESLAISDDYGRTPLHDACWTSEPFFDMVTFILDHEVEMLLVKDKRGFTPLLYVKKELWGAWHTFIDAIKDKYWP 173          
BLAST of mRNA_H-akashiwo_Contig922.5.1 vs. uniprot
Match: A0A7S0SWK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWK6_9STRA)

HSP 1 Score: 152 bits (385), Expect = 3.430e-42
Identity = 72/167 (43.11%), Postives = 108/167 (64.67%), Query Frame = 1
Query:    1 LTPEKYLLGKLFIERGYDTTLTRTLMQPRFQAPLTKERFQSYTTELVEAVRSGNIEKLQDLKSRGSSMSACNKFGESVLHMAARKGEMKIFAFLMNSVDNIYITDDQGRTILHDACWSATPNFDVVTMILQHDETLLRATDVRGSTPLAYIKRDNWQQWYEYLDRMK 501
            + P+++LL +L   RGYD  L   +    ++AP  K+    YT +L+ A+R  ++ KL+ L  +G SMSACN++ ES++HMA R+ +  +  FL+ +  + YITDD GRT LHDACW   P FD+VTM+L +D TLLR  D+RGS PL Y+++++W +W  Y    K
Sbjct:  147 IPPDQFLL-RLLSCRGYDYNLIPAVQSSYYKAPSEKQ-INDYTNDLINAIRYSDLSKLKALVDQGYSMSACNRYSESIVHMACRRSDPAVVDFLLKNGGDYYITDDFGRTPLHDACWRLDPRFDIVTMLLDNDLTLLRLADIRGSIPLCYVRQEHWAKWCAYFFHQK 311          
BLAST of mRNA_H-akashiwo_Contig922.5.1 vs. uniprot
Match: W7TFS2_9STRA (Ankyrin repeat-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFS2_9STRA)

HSP 1 Score: 154 bits (390), Expect = 8.780e-42
Identity = 72/178 (40.45%), Postives = 112/178 (62.92%), Query Frame = 1
Query:    4 TPEKYLLGKLFIERGYDTTLTRTLMQPRFQAPLTKERFQSYTTELVEAVRSGNIEKLQDLKSRGSSMSACNKFGESVLHMAARKGEMKIFAFLMNSVDNIYITDDQGRTILHDACWSATPNFDVVTMILQHDETLLRATDVRGSTPLAYIKRDNWQQWYEYLDRMKETFWPSRISAAS 537
            +P+ +L G +  ERGY+T+      Q  F+ P  K+    Y   LV AVR+G++  L+D+ + G  M ACN+FGES++H++ R+G+ +   FL+ +   +++ DD GRT LHDACW+  P FD V+ I+  D +L+R  D RG+TPL+YI+R++W +W E+ D  KE +W      AS
Sbjct:  186 SPQDFLWG-ILQERGYETSPLLAKTQAFFRPPTAKQ-VTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLPGCAS 361          
BLAST of mRNA_H-akashiwo_Contig922.5.1 vs. uniprot
Match: A0A6H5JNI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI0_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 4.230e-41
Identity = 74/171 (43.27%), Postives = 110/171 (64.33%), Query Frame = 1
Query:    4 TPEKYLLGKLFIERGYDTTLTRTLMQPRFQAPLTKERFQSYTTELVEAVRSGNIEKLQDLKSRGSSMSACNKFGESVLHMAARKGEMKIFAFLMNSVDNIYITDDQGRTILHDACWSATPNFDVVTMILQHDETLLRATDVRGSTPLAYIKRDNWQQWYEYLDRMKETFWP 516
            +P+ YL   + +ERGYD+T  R+      +   T+++   Y   LVEAVR  ++  L+ L + G  M A N+FGES++H+A R+G   +  FL++   ++ I DD G+T LHDA W+A P F++V M+L+ D  LLRATDVRG+TPL Y K ++W  W E+LDR+K+  WP
Sbjct:   97 SPQAYLEA-ILLERGYDST-PRSSASDGCRCTPTQKQLDDYQVPLVEAVRRWDMGALEALAADGVDMGASNRFGESIVHLATRRGSTPVLRFLLSHGGSLRICDDYGKTPLHDAFWTAEPRFELVAMMLEMDWGLLRATDVRGATPLRYAKNEHWASWCEFLDRVKDHLWP 265          
BLAST of mRNA_H-akashiwo_Contig922.5.1 vs. uniprot
Match: A0A7S2RMJ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMJ8_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.900e-39
Identity = 73/175 (41.71%), Postives = 109/175 (62.29%), Query Frame = 1
Query:    7 PEKYLLGKLFIERGYDTTLTRTLMQPRFQAPLTKERFQSYTTELVEAVRSGNIEKLQDLKSRGSSMSACNKFGESVLHMAARKGEMKIFAFLMNSVDNIYITDDQGRTILHDACWSATPNFDVVTMILQHDETLLRATDVRGSTPLAYIKRDNWQQWYEYLDRMKETFWPSRISA 531
            P++++   L + RGY+TT   +L Q  F+   T ++ Q Y    V+A+R+ N   +Q     G SM+ACNK+GESV+HMA R+G+ K+ +F++     + ITDD GRT LHDACW+  P  DVV  +L  +  LL   D RG +PLAY++R+++  W  + D MK+T+W  R SA
Sbjct:  283 PDQFV-DSLLVSRGYETTRIPSL-QTEFRTVPTPKQIQDYDLAFVDAIRTSNYAAIQSFYDEGRSMNACNKYGESVMHMACRRGDGKLVSFMVELGGLLEITDDYGRTPLHDACWTPEPCLDVVMFLLNKNLRLLHLIDKRGFSPLAYVRREHYDVWTSFFDSMKDTWWSPRNSA 455          
BLAST of mRNA_H-akashiwo_Contig922.5.1 vs. uniprot
Match: A0A836C8T3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8T3_9STRA)

HSP 1 Score: 139 bits (351), Expect = 9.510e-39
Identity = 72/170 (42.35%), Postives = 99/170 (58.24%), Query Frame = 1
Query:    7 PEKYLLGKLFIERGYDTTLTRTLMQPRFQAPLTKERFQSYTTELVEAVRSGNIEKLQDLKSRGSSMSACNKFGESVLHMAARKGEMKIFAFLMNSVDNIYITDDQGRTILHDACWSATPNFDVVTMILQHDETLLRATDVRGSTPLAYIKRDNWQQWYEYLDRMKETFWP 516
            PE  L G +  ERGY T    TL  P F  P    + +SY   LV AVR G++  L+ +++ G +M+ACN+FGESVLH A R G + + AFL+ S  +    DD GRT LH A W+  P FDV T++L  D  LLR  D RG++PL Y++ ++W  W  +    K  +WP
Sbjct:    3 PETVLHG-ILQERGYSTQTAPTLETP-FHRPPQPHQVESYDNALVGAVRGGDLAALRAMRAAGHTMTACNRFGESVLHTAVRHGSVDVVAFLLESGAHAGTCDDCGRTALHFALWTPAPRFDVATLLLNTDVRLLRCLDKRGASPLQYVRPEHWPLWCRFFHAKKHLYWP 170          
BLAST of mRNA_H-akashiwo_Contig922.5.1 vs. uniprot
Match: A0A836CA41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA41_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.210e-38
Identity = 60/134 (44.78%), Postives = 88/134 (65.67%), Query Frame = 1
Query:  124 YTTELVEAVRSGNIEKLQDLKSRGSSMSACNKFGESVLHMAARKGEMKIFAFLMNSV--DNIYITDDQGRTILHDACWSATPNFDVVTMILQHDETLLRATDVRGSTPLAYIKRDNWQQWYEYLDRMKETFWPS 519
            YT   + AVR  +++ L+ L + G  M+ACNKF ES++HMA R G   +  FL++    + + I DD GRT LHDACW+  P FD+V+ IL HD ++L   D RG TPL+Y+KRD W  W+ ++D +K+ +WP+
Sbjct:    4 YTMATINAVRQADLDALRMLHAEGHGMNACNKFAESLVHMAGRSGNCAVMEFLIDCTGPEGLTICDDYGRTPLHDACWATEPCFDLVSFILDHDSSMLMVVDRRGYTPLSYVKRDQWGAWHAFIDAVKDKYWPT 137          
BLAST of mRNA_H-akashiwo_Contig922.5.1 vs. uniprot
Match: A0A7R9ZHX0_9STRA (Hypothetical protein n=6 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHX0_9STRA)

HSP 1 Score: 147 bits (372), Expect = 5.960e-38
Identity = 73/184 (39.67%), Postives = 113/184 (61.41%), Query Frame = 1
Query:    1 LTPEKYLLGKLFIERGYDTTLTRTLMQPRFQAPLTKERFQSYTTELVEAVRSGNIEKLQDLKSRGSSMSACNKFGESVLHMAARKGEMKIFAFLMNSVDNIYITDDQGRTILHDACWSATPNFDVVTMILQHDETLLRATDVRGSTPLAYIKRDNWQQWYEYLDRMKETFWPSRISAASGDWQP 552
            ++P+ +L   L   RGY T    +L    +  P   ++  SY   LV AVRS +   L  + + G S + CN FGES++HM  R+G+  +   +++    + ++DD GRT LHDACW+A P+F+ V +IL+ D  LLR  D RGS+PL+Y K+++W +W EYL+R K+T+WP+R   A G+ +P
Sbjct:  392 VSPQTFL-DSLLKTRGYSTASYCSLETGYYSKPTPYQKA-SYGLALVRAVRSSDGPTLSSMLASGLSRNPCNAFGESLVHMVCRRGDHGLLRVMLDRGATLQVSDDFGRTPLHDACWTAEPSFECVDLILERDVRLLRILDCRGSSPLSYAKKEHWSEWIEYLERKKDTYWPARDVKAEGEERP 573          
BLAST of mRNA_H-akashiwo_Contig922.5.1 vs. uniprot
Match: A0A7S2A163_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A163_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.610e-37
Identity = 77/184 (41.85%), Postives = 107/184 (58.15%), Query Frame = 1
Query:    1 LTPEKYLLGKLFIERGYDTTLTRTLMQPRFQAPLTKERFQSYTTELVEAVRSGNIEKLQDLKSRGSSMSACNKFGESVLHMAARKGEMKIFAFLMNSVDNIYITDDQGRTILHDACWSATPNFDVVTMILQHDETLLRATDVRGSTPLAYIKRDNWQQWYEYLDRMKETFWPSRISAASGDWQP 552
            ++P+K+L   L   RGY T    +L    +  P   ++  SY T++V+AVRS +   L+     G S + CN FGES+LHM  R+G  K+   L +    I ++DD GRT LHDACW+  P+FD V +IL  D  LL   D RG+ PLAY+KRDNW +W EY +R K+ +WP R     G+  P
Sbjct:  317 ISPQKFL-DDLLRSRGYSTKQFCSLEGGYYCKPTPLQKA-SYGTKIVQAVRSSDDSLLRRFLQFGLSRNPCNAFGESLLHMVCRRGNYKLLKLLSDFGCYIQVSDDFGRTPLHDACWTTEPDFDCVDLILNVDVRLLHIVDCRGAAPLAYVKRDNWGKWIEYFNRTKDKYWPPRDIKKDGEEPP 498          
BLAST of mRNA_H-akashiwo_Contig922.5.1 vs. uniprot
Match: B7G9J4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9J4_PHATC)

HSP 1 Score: 143 bits (360), Expect = 3.590e-37
Identity = 68/183 (37.16%), Postives = 107/183 (58.47%), Query Frame = 1
Query:    1 LTPEKYLLGKLFIERGYDTTLTRTLMQPRFQAPLTKERFQSYTTELVEAVRSGNIEKLQDLKSRGSSMSACNKFGESVLHMAARKGEMKIFAFLMNSVDNIYITDDQGRTILHDACWSATPNFDVVTMILQHDETLLRATDVRGSTPLAYIKRDNWQQWYEYLDRMKETFWPSRISAASGDWQ 549
            ++P+ YL   +   RGY T   +TL    +  P   ++  SY   L++ V+   +E L+++   G S + CN FGES+LHM  R+G++ +   L+    N+ + DD GRT LHDACW+A P F VV +IL+ D  LL  +D RG+ PL+Y+++++W +W  YL+  K T+WP   +    D Q
Sbjct:  159 ISPQSYL-DDMIAARGYSTEKFKTLQTAYYNKPTALQQA-SYDVYLIDLVKKNGVETLRNIFKSGVSPNPCNTFGESLLHMICRRGDVDLLKVLLECGTNLQVADDYGRTPLHDACWAAKPAFAVVDLILERDPRLLYMSDCRGALPLSYVRKEHWCEWVPYLEARKHTYWPVLTNNTDTDSQ 339          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig922.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZH90_9STRA4.390e-4441.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0SWK6_9STRA3.430e-4243.11Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
W7TFS2_9STRA8.780e-4240.45Ankyrin repeat-containing protein n=3 Tax=Monodops... [more]
A0A6H5JNI0_9PHAE4.230e-4143.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2RMJ8_9STRA2.900e-3941.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836C8T3_9STRA9.510e-3942.35Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CA41_9STRA2.210e-3844.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9ZHX0_9STRA5.960e-3839.67Hypothetical protein n=6 Tax=Pseudictyota dubia Ta... [more]
A0A7S2A163_9STRA1.610e-3741.85Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B7G9J4_PHATC3.590e-3737.16Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig922contigH-akashiwo_Contig922:298217..298783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatr39760
PFAMsAnk_2
Model size567
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.89e-38
EggNOG OGs2C0FJ@1|root,2S48R@2759|Eukaryota,2XCZU@2836|Bacillariophyta
Descriptionankyrin repeats
Cds size567
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388044.1166925-CDS-H-akashiwo_Contig922:298216..2987831681388044.1166925-CDS-H-akashiwo_Contig922:298216..298783Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig922 298217..298783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig922.5.1prot_H-akashiwo_Contig922.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig922 298217..298783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig922.5.1

>prot_H-akashiwo_Contig922.5.1 ID=prot_H-akashiwo_Contig922.5.1|Name=mRNA_H-akashiwo_Contig922.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=189bp
LTPEKYLLGKLFIERGYDTTLTRTLMQPRFQAPLTKERFQSYTTELVEAV
RSGNIEKLQDLKSRGSSMSACNKFGESVLHMAARKGEMKIFAFLMNSVDN
IYITDDQGRTILHDACWSATPNFDVVTMILQHDETLLRATDVRGSTPLAY
IKRDNWQQWYEYLDRMKETFWPSRISAASGDWQPNQKS*
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mRNA from alignment at H-akashiwo_Contig922:298217..298783-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig922.5.1 ID=mRNA_H-akashiwo_Contig922.5.1|Name=mRNA_H-akashiwo_Contig922.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=567bp|location=Sequence derived from alignment at H-akashiwo_Contig922:298217..298783- (Heterosigma akashiwo CCMP452)
CTCACCCCAGAGAAGTATTTGCTGGGCAAACTATTCATAGAGAGGGGCTA TGATACAACCCTAACAAGAACCTTGATGCAGCCAAGATTTCAAGCACCCT TGACCAAAGAAAGGTTCCAGTCCTACACAACGGAGCTAGTTGAGGCAGTT AGATCAGGAAATATTGAAAAGCTTCAGGACCTCAAATCTCGGGGGAGCAG TATGTCTGCATGTAACAAATTTGGGGAATCTGTCCTACACATGGCGGCCA GGAAAGGTGAAATGAAGATATTTGCCTTTTTGATGAACTCTGTAGACAAT ATTTATATAACAGATGACCAGGGAAGAACAATTCTCCATGATGCATGTTG GAGTGCAACACCAAATTTTGATGTAGTCACGATGATTCTGCAGCATGATG AAACTCTTCTGAGAGCCACAGATGTCAGAGGCTCCACACCTCTTGCATAC ATAAAACGCGACAACTGGCAGCAATGGTACGAATACTTAGACAGAATGAA GGAGACATTTTGGCCGTCTCGAATTAGCGCCGCAAGTGGAGACTGGCAGC CCAACCAAAAATCATGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig922:298217..298783-

>mRNA_H-akashiwo_Contig922.5.1 ID=mRNA_H-akashiwo_Contig922.5.1|Name=mRNA_H-akashiwo_Contig922.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=567bp|location=Sequence derived from alignment at H-akashiwo_Contig922:298217..298783- (Heterosigma akashiwo CCMP452)
CTCACCCCAGAGAAGTATTTGCTGGGCAAACTATTCATAGAGAGGGGCTA
TGATACAACCCTAACAAGAACCTTGATGCAGCCAAGATTTCAAGCACCCT
TGACCAAAGAAAGGTTCCAGTCCTACACAACGGAGCTAGTTGAGGCAGTT
AGATCAGGAAATATTGAAAAGCTTCAGGACCTCAAATCTCGGGGGAGCAG
TATGTCTGCATGTAACAAATTTGGGGAATCTGTCCTACACATGGCGGCCA
GGAAAGGTGAAATGAAGATATTTGCCTTTTTGATGAACTCTGTAGACAAT
ATTTATATAACAGATGACCAGGGAAGAACAATTCTCCATGATGCATGTTG
GAGTGCAACACCAAATTTTGATGTAGTCACGATGATTCTGCAGCATGATG
AAACTCTTCTGAGAGCCACAGATGTCAGAGGCTCCACACCTCTTGCATAC
ATAAAACGCGACAACTGGCAGCAATGGTACGAATACTTAGACAGAATGAA
GGAGACATTTTGGCCGTCTCGAATTAGCGCCGCAAGTGGAGACTGGCAGC
CCAACCAAAAATCATGA
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