mRNA_H-akashiwo_Contig92.14.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig92.14.1
Unique NamemRNA_H-akashiwo_Contig92.14.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig92.14.1 vs. uniprot
Match: A0A7S4DHC0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHC0_HETAK)

HSP 1 Score: 105 bits (262), Expect = 4.510e-26
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 RMSRRIAGARDRQALTATTLYAKPGADGPRPADVRTNVYAHREFADDLDPG 153
            RMSRRIAGARDRQALTATTLYAKPGADGPRPADVRTNVYAHREFADDLDPG
Sbjct:  221 RMSRRIAGARDRQALTATTLYAKPGADGPRPADVRTNVYAHREFADDLDPG 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig92.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DHC0_HETAK4.510e-26100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig92contigH-akashiwo_Contig92:1272717..1275054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size154
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388042.485593-UTR-H-akashiwo_Contig92:1272716..12727191681388042.485593-UTR-H-akashiwo_Contig92:1272716..1272719Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig92 1272717..1272719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388042.4986975-CDS-H-akashiwo_Contig92:1272719..12727551681388042.4986975-CDS-H-akashiwo_Contig92:1272719..1272755Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig92 1272720..1272755 +
1681388042.5131712-CDS-H-akashiwo_Contig92:1273682..12737691681388042.5131712-CDS-H-akashiwo_Contig92:1273682..1273769Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig92 1273683..1273769 +
1681388042.5221934-CDS-H-akashiwo_Contig92:1275027..12750541681388042.5221934-CDS-H-akashiwo_Contig92:1275027..1275054Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig92 1275028..1275054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig92.14.1prot_H-akashiwo_Contig92.14.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig92 1272720..1275054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig92.14.1

>prot_H-akashiwo_Contig92.14.1 ID=prot_H-akashiwo_Contig92.14.1|Name=mRNA_H-akashiwo_Contig92.14.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=50bp
MSRRIAGARDRQALTATTLYAKPGADGPRPADVRTNVYAHREFADDLDPG
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mRNA from alignment at H-akashiwo_Contig92:1272717..1275054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig92.14.1 ID=mRNA_H-akashiwo_Contig92.14.1|Name=mRNA_H-akashiwo_Contig92.14.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2338bp|location=Sequence derived from alignment at H-akashiwo_Contig92:1272717..1275054+ (Heterosigma akashiwo CCMP452)
CGCATGAGCCGGCGGATCGCCGGGGCCCGCGACCGCCAGGTACCGCCTCC
TCTCGCAACCCCCGGGCGGCGGATCCGGCCGCTGCCACGTTGCTACTACT
ATCCAGCACGTGGTCACCGTCTCTGAGACGGGACAACTTCACCAGAGCGC
GTTTCTTTGAACCGATAGGACCGTTGCTGCTCTCCCAGTCATGGACTTTG
GCGTCTGAATCCATTCGCACCGCTTGCATCCCACTTCTTAGGCCTTCACA
AGTTTAAATGCCCCAGATATATATGTATTTCTTCGCTATACAACCGTAGC
TCTCCAGATCGTTTTACTTGGAACGATTGTGCGTTGTCCTCTATCATTAC
TTCGAAGGGAAACAATGCAAAGGGATCGTGGGTGGGCAGATGTTGGGGGA
ATTCAACCTGCCCCATCTTCCAGCTGATTCTCCCCGACAGAAGCAGAATG
TCAATGGCGAGCTATCATACTCGCCATTCCACTTTCTTCATCAAGAACGG
TAAAACGCAAAGCGGCAAAAGTGGGTATGCACTGAAGATGACCCCCCCCC
CCCCCCTTCGTTGCCCACCATCTTGACTCTGGACTCTACTGTTGCCCACA
CTTTCAACTACCCGGCCGCGCCGCTAACCAGGGGTCCCGCCCTTGCCCGC
CGACCGCTCTCCACCGCGGGCCCCCAACCTCACCGATCCCCTAGTATATT
ATTGAGAACAACTTGAAATACAATTCATAAGGGTTGAATGAAGGTAGCTA
TATATATATTCTATTCAGAAGGTGTCTTTAGGCACCCTCTACTATGCAGT
TACATATCATTATCACACTACTCCTAAGACAACAAAGAGACCTGCACCAT
CTTCGTACCCAATACTAAGTTTAATTTTCTTAAAGCCGTCTGTCTTAGAC
TGCTAATGAGGTACCAACCCAATGTCCCCACATTTTTTTTACCCCCGCGA
GGGGGCAACCGCCCAGGCGCTCACTGCGACCACCCTGTACGCCAAGCCCG
GCGCCGACGGCCCCCGGCCCGCGGACGTGCGCACCAACGTGTACGCGCAC
CGGGTGCGTGGTGGCGGCGTGCGTTGTGCTTTACTTTACTACTGTTATGC
TTTTTGTTACGACTGCCGCCTGCTTGATGTTGTTCTTCTTCTGCTCCTTT
TGTAACAGCGGGAGGCAAAAAGCTTCTTGTTTGACATCATCAATGGCTGC
TGGTATATTTCTTCTGCTGCGATGCCGCCATTGTGGGTTTCGTACTATCA
TTCAGTTTTTTTCTCCTCCAGACTACTCATATTTACTATGCTGTCACTCT
TTCTTACAAGTATGTGGTTTATATATTTTCTTTGTGCCACTTCGGCGGTT
GGCGAAAACTTATGTTCACCTCTTTCAAAATCTATTACCTCCTGTTCACT
GCTACGAGAGGGCTGGTCTTTTGTTCCTTGCTGATGCGCTGATCCATCCT
TGTAATGACTCTTTTTTGTATCATATTCAGTAGAAAAATGATCACAGATG
GTGTAGAACTATTATTATGTATAATGAAATCATGCGGACAAATCCGTGAA
TAAAACAAAGGAGCATTATCACGGTTTAAAGGTTACGACGTTTCGGATTT
CCCCTTCATCAGGTAAGATTACGAAGCTATCTCAGAAGAAATCTCATCTC
CGAAGAAATGAAAGAGGGACTTGTCAGAGCATCAGCACCAACGCCTCCTA
ACTAGTAAAAAGAACGAAGAAAAAAGAACGGATTGAAGAAATATACCCAA
TCAAAGCACCAGAGCAAAAAATCAGCGAATCAAAAAACCATAAAGCGGCA
GAAACCAGTTCATCCGAAAAAAAAATGGCAAACTGCATGTTGAAAAACGG
ACGTGGCAGTGGCCATTACGAAATAACATCCTTTCCGCGATCACGGCACA
CCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTATACGCAGTCTCC
GTCCCCGGACCAAGAAAACCGTCTATAAAAAATGCCGCAGCAGAGGGAGC
CAATCATCTTCTAGGAAATGGTACACCTATCATATTTGAACCCTCGCACC
AGAACATCTTTGAAGACATCTACCCCGTATATATGACTGTCAAAATCTGA
CTCCTCTTTACTGCCATGAAGGCTGGTCTCTCGTTCCTGGCTGGTTCGCC
GACCCATATCGCTCCCTCTCATGCTTCAACCCCCACACCAGAAAATCTCC
CTCTCTTGTAGAAGTCGACCGTGCACCACAGCCGGACGATGCCGGGGCGA
AGTTCGCCATCGGCCGCAGCGCTCCACGTTTGCGCCCCCCCCCCCGTCTC
CCCCTGCCCAGGAGTTCGCTGACGACCTGGACCCGGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig92:1272717..1275054+

>mRNA_H-akashiwo_Contig92.14.1 ID=mRNA_H-akashiwo_Contig92.14.1|Name=mRNA_H-akashiwo_Contig92.14.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=150bp|location=Sequence derived from alignment at H-akashiwo_Contig92:1272717..1275054+ (Heterosigma akashiwo CCMP452)
ATGAGCCGGCGGATCGCCGGGGCCCGCGACCGCCAGGCGCTCACTGCGAC
CACCCTGTACGCCAAGCCCGGCGCCGACGGCCCCCGGCCCGCGGACGTGC
GCACCAACGTGTACGCGCACCGGGAGTTCGCTGACGACCTGGACCCGGGC
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