mRNA_H-akashiwo_Contig123.18.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig123.18.1
Unique NamemRNA_H-akashiwo_Contig123.18.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig123.18.1 vs. uniprot
Match: A0A7S2UYW1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYW1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.370e-10
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 SNYSLTIEFLDNLAGVCGPEYKGAIKARLQSHYLVKEFLAKWNLPIYFQLR 153
            +NY L++ FL+ LA + GP++  A+  RLQS   V+EFL +WNLPIYFQLR
Sbjct:    6 ANYCLSMAFLEKLAHLAGPQHHSAMHRRLQSDPNVQEFLGRWNLPIYFQLR 56
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BLAST of mRNA_H-akashiwo_Contig123.18.1 vs. uniprot
Match: A0A6H5JYJ6_9PHAE (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ6_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 9.720e-8
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 SNYSLTIEFLDNLAGVCGPEYKGAIKARLQSHYLVKEFLAKWNLPIYFQLR 153
            SN+ L +EFL+ LA + G E +  I+ RL     V EF A+WNLPIYFQLR
Sbjct:  520 SNFMLCMEFLEGLAAIAGSEKRLRIRHRLLGQPSVAEFKARWNLPIYFQLR 570
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BLAST of mRNA_H-akashiwo_Contig123.18.1 vs. uniprot
Match: D8LMA5_ECTSI (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA5_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 9.750e-8
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 SNYSLTIEFLDNLAGVCGPEYKGAIKARLQSHYLVKEFLAKWNLPIYFQLR 153
            SN+ L +EFL+ LA + G E +  I+ RL     V EF A+WNLPIYFQLR
Sbjct:  513 SNFVLCMEFLEGLAAIAGGEKRPRIRHRLLGQPSVAEFKARWNLPIYFQLR 563
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BLAST of mRNA_H-akashiwo_Contig123.18.1 vs. uniprot
Match: A0A2G8JHX7_STIJA (Putative conserved oligomeric Golgi complex subunit 2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JHX7_STIJA)

HSP 1 Score: 48.5 bits (114), Expect = 3.740e-5
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    7 YSLTIEFLDNLAGVCGPEYKGAIKARLQSHYLVKEFLAKWNLPIYFQLR 153
            Y L +EF+D     CG +   A   RL+SH+    F+AKW+LP+YFQLR
Sbjct:  213 YLLAMEFVDRFERQCGTQ---ASVKRLRSHHSFTTFMAKWSLPVYFQLR 258
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BLAST of mRNA_H-akashiwo_Contig123.18.1 vs. uniprot
Match: A0A087TGA7_STEMI (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=6 Tax=Stegodyphus TaxID=175340 RepID=A0A087TGA7_STEMI)

HSP 1 Score: 47.8 bits (112), Expect = 7.010e-5
Identity = 22/50 (44.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    4 NYSLTIEFLDNLAGVCGPEYKGAIKARLQSHYLVKEFLAKWNLPIYFQLR 153
            NY+ ++ FL+     CG +      ARL+ H L K+FL KWNL +YFQ+R
Sbjct:  197 NYTASLNFLEQFEHHCGVQKS---VARLRDHSLYKDFLKKWNLDVYFQIR 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig123.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S2UYW1_9STRA6.370e-1054.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5JYJ6_9PHAE9.720e-852.94Conserved oligomeric Golgi complex subunit 2 (Frag... [more]
D8LMA5_ECTSI9.750e-852.94Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A2G8JHX7_STIJA3.740e-546.94Putative conserved oligomeric Golgi complex subuni... [more]
A0A087TGA7_STEMI7.010e-544.00Conserved oligomeric Golgi complex subunit 2 (Frag... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig123contigH-akashiwo_Contig123:1255422..1255807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMA5
Preferred nameCOG2
PFAMsCOG2,DUF3510
Model size155
Max annot lvl2759|Eukaryota
KEGG koko:K20289
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0006810,GO:0006891,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0017119,GO:0031984,GO:0032991,GO:0033036,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0048193,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071840,GO:0098791,GO:0099023
Exons2
Evalue1.6e-08
EggNOG OGsKOG2307@1|root,KOG2307@2759|Eukaryota
DescriptionGolgi organization
Cds size153
COG categoryS
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387127.4235396-CDS-H-akashiwo_Contig123:1255421..12554881681387127.4235396-CDS-H-akashiwo_Contig123:1255421..1255488Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 1255422..1255488 +
1681387127.4357271-CDS-H-akashiwo_Contig123:1255720..12558061681387127.4357271-CDS-H-akashiwo_Contig123:1255720..1255806Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 1255721..1255806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig123.18.1prot_H-akashiwo_Contig123.18.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig123 1255422..1255806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig123.18.1

>prot_H-akashiwo_Contig123.18.1 ID=prot_H-akashiwo_Contig123.18.1|Name=mRNA_H-akashiwo_Contig123.18.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=51bp
SNYSLTIEFLDNLAGVCGPEYKGAIKARLQSHYLVKEFLAKWNLPIYFQL
R
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mRNA from alignment at H-akashiwo_Contig123:1255422..1255807+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig123.18.1 ID=mRNA_H-akashiwo_Contig123.18.1|Name=mRNA_H-akashiwo_Contig123.18.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=386bp|location=Sequence derived from alignment at H-akashiwo_Contig123:1255422..1255807+ (Heterosigma akashiwo CCMP452)
TCAAACTACAGCCTCACGATAGAGTTTTTAGACAACCTGGCGGGTGTCTG
CGGCCCTGAGTACAAAGGTGGGCTCCTTTCACTACTCTGCTGTGTTGCCC
CTCATGCGTTTTGTTTCATCGCTTTTTGTATCCATGAATACGCATCATGT
CAAATGAGGCAAGACCTGTTAAAAATGCTGGTATTTGTTGATAAATGTAT
ACAAGTATTCAGGTATCTTGGTGGACCTGTGTTCACCTGACGTAGCTGTG
CTTGCCCTGTTTCTCTGCCTCCAATGCACCCTCTACACGCCAACTACAGG
TGCAATCAAGGCCAGACTGCAGTCACACTACCTTGTGAAGGAGTTCCTTG
CAAAATGGAACCTTCCAATCTACTTTCAGCTCAGGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig123:1255422..1255807+

>mRNA_H-akashiwo_Contig123.18.1 ID=mRNA_H-akashiwo_Contig123.18.1|Name=mRNA_H-akashiwo_Contig123.18.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=153bp|location=Sequence derived from alignment at H-akashiwo_Contig123:1255422..1255807+ (Heterosigma akashiwo CCMP452)
TCAAACTACAGCCTCACGATAGAGTTTTTAGACAACCTGGCGGGTGTCTG
CGGCCCTGAGTACAAAGGTGCAATCAAGGCCAGACTGCAGTCACACTACC
TTGTGAAGGAGTTCCTTGCAAAATGGAACCTTCCAATCTACTTTCAGCTC
AGG
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