mRNA_H-akashiwo_Contig91.33.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig91.33.1
Unique NamemRNA_H-akashiwo_Contig91.33.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig91.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig91contigH-akashiwo_Contig91:1793911..1795074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size513
Hectar predicted targeting categoryother localisation
Exons5
Cds size414
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig91.33.1prot_H-akashiwo_Contig91.33.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig91 1793911..1794976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388037.7548904-CDS-H-akashiwo_Contig91:1793910..17939981681388037.7548904-CDS-H-akashiwo_Contig91:1793910..1793998Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig91 1793911..1793998 -
1681388037.7648711-CDS-H-akashiwo_Contig91:1794143..17942191681388037.7648711-CDS-H-akashiwo_Contig91:1794143..1794219Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig91 1794144..1794219 -
1681388037.7743065-CDS-H-akashiwo_Contig91:1794364..17944321681388037.7743065-CDS-H-akashiwo_Contig91:1794364..1794432Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig91 1794365..1794432 -
1681388037.7835486-CDS-H-akashiwo_Contig91:1794658..17947301681388037.7835486-CDS-H-akashiwo_Contig91:1794658..1794730Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig91 1794659..1794730 -
1681388037.7929032-CDS-H-akashiwo_Contig91:1794866..17949761681388037.7929032-CDS-H-akashiwo_Contig91:1794866..1794976Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig91 1794867..1794976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388037.8029394-UTR-H-akashiwo_Contig91:1794976..17950741681388037.8029394-UTR-H-akashiwo_Contig91:1794976..1795074Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig91 1794977..1795074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig91.33.1

>prot_H-akashiwo_Contig91.33.1 ID=prot_H-akashiwo_Contig91.33.1|Name=mRNA_H-akashiwo_Contig91.33.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=138bp
MDVGDRHMQAAIMESYRSSRPSPASYQRQPSSSYYLRNSSGQRPQTSSRP
PGFGRRNQLAREGIRDGVNSRARGLSETSIHDIGSGKGGKAFIAGRTARP
SRPQSRALGAGGGRRRRPRRRRGAAVHGEPALGVPAAG
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mRNA from alignment at H-akashiwo_Contig91:1793911..1795074-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig91.33.1 ID=mRNA_H-akashiwo_Contig91.33.1|Name=mRNA_H-akashiwo_Contig91.33.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1164bp|location=Sequence derived from alignment at H-akashiwo_Contig91:1793911..1795074- (Heterosigma akashiwo CCMP452)
TGCAATTGCGATCATTTTGGATTTGGGAGAATTTGATGGTAATATAATGA
TGATGTTATTTGATTGCATTCACCCGTGTGACTAGCGATCATCTGACGAT
GGACGTTGGTGATCGTCATATGCAAGCTGCCATTATGGAATCGTATAGAA
GTTCAAGACCGTCTCCAGCATCATATCAGAGACAGCCCAGCTCGAGCTAT
TACTTGAGGTGTGGCGGCATGCCTTTCAATGATGAATGTATACTGCCCAT
GTTTGAAAGTGATTCGTTATCCCTTCTTCTAATCCAAATAAATACAATGT
TTCCTTTTTTTTTTTTTTTGGCTACTGATGCACATATTCATCAGGAATAG
CTCGGGCCAAAGGCCCCAAACTAGTTCAAGACCGCCTGGGTTTGGACGAC
GAAATCAGCTCGCCAGGTTTTTTACATTCTGGCACATTTAAAAACTACAA
TTATATGTCATTGTAGTATTTACTGATTGGCTTACATTACTTTTTATCAA
GTGCATAACAATTATCCCCCTCAAAACAGTTGAAACTGGTGTTCTACAAA
ACCATTATCAGCATTAAAGTTCCCATATTATTATCATGTGGCATGATATT
ATGGAAAGAAAAATGGCTTGGATATTTTGCTTACTTAAATAGGGAAGGTA
TCAGAGATGGGGTCAATTCTCGTGCAAGGGGGCTTTCCGAAACTTCCATT
CATGACATAGGTATAGTGAAAACCTTTTTTTGGTTTATTTTGAGCTGGTC
ACCACGTACAAACAACTCATTCAACTCCAATTCATGTTAGAGTTGAAGGA
CATTTGACCATGCCTGTTGACATACAAACAATTCTATTGTTCTTTCTCGC
CACAGGGAGCGGTAAAGGGGGTAAAGCTTTCATCGCTGGGAGAACTGCCC
GGCCTTCTCGACCGCAATCCAGAGCGTTAGGGTGGGACTTTCTGTATTTG
TGGCGGTGGCCTTCCTCACATCCAAACTGATCTAGGCACTCGCCTCGCCG
CCATCCACTCCCCAGCACACAGGCCGTTCCTGTTCCATTGGAAAGAACAG
GCCGCCCATACCCCGCCCGCCCGCAGGGCGGGCGGCGGGCGGCGGCGGCG
ACCTCGGCGGCGCCGGGGGGCAGCCGTCCATGGAGAACCTGCTCTCGGAG
TTCCGGCAGCAGGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig91:1793911..1795074-

>mRNA_H-akashiwo_Contig91.33.1 ID=mRNA_H-akashiwo_Contig91.33.1|Name=mRNA_H-akashiwo_Contig91.33.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=414bp|location=Sequence derived from alignment at H-akashiwo_Contig91:1793911..1795074- (Heterosigma akashiwo CCMP452)
ATGGACGTTGGTGATCGTCATATGCAAGCTGCCATTATGGAATCGTATAG
AAGTTCAAGACCGTCTCCAGCATCATATCAGAGACAGCCCAGCTCGAGCT
ATTACTTGAGGAATAGCTCGGGCCAAAGGCCCCAAACTAGTTCAAGACCG
CCTGGGTTTGGACGACGAAATCAGCTCGCCAGGGAAGGTATCAGAGATGG
GGTCAATTCTCGTGCAAGGGGGCTTTCCGAAACTTCCATTCATGACATAG
GGAGCGGTAAAGGGGGTAAAGCTTTCATCGCTGGGAGAACTGCCCGGCCT
TCTCGACCGCAATCCAGAGCGTTAGGGGCGGGCGGCGGGCGGCGGCGGCG
ACCTCGGCGGCGCCGGGGGGCAGCCGTCCATGGAGAACCTGCTCTCGGAG
TTCCGGCAGCAGGT
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