mRNA_H-akashiwo_Contig123.20.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig123.20.1
Unique NamemRNA_H-akashiwo_Contig123.20.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig123.20.1 vs. uniprot
Match: A0A7S4DDD5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDD5_HETAK)

HSP 1 Score: 114 bits (284), Expect = 9.090e-30
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 MGTAVSASNTSPVETDEEGEEESAHTWVMTFNGAYSEQNVTFWESLTGARFPLPH 165
            MGTAVSASNTSPVETDEEGEEESAHTWVMTFNGAYSEQNVTFWESLTGARFPLPH
Sbjct:    1 MGTAVSASNTSPVETDEEGEEESAHTWVMTFNGAYSEQNVTFWESLTGARFPLPH 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig123.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DDD5_HETAK9.090e-30100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig123contigH-akashiwo_Contig123:1296976..1303912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size167
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387127.0350351-CDS-H-akashiwo_Contig123:1296975..12970621681387127.0350351-CDS-H-akashiwo_Contig123:1296975..1297062Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 1296976..1297062 -
1681387127.0442672-CDS-H-akashiwo_Contig123:1303834..13039121681387127.0442672-CDS-H-akashiwo_Contig123:1303834..1303912Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig123 1303835..1303912 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig123.20.1prot_H-akashiwo_Contig123.20.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig123 1296976..1303912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig123.20.1

>prot_H-akashiwo_Contig123.20.1 ID=prot_H-akashiwo_Contig123.20.1|Name=mRNA_H-akashiwo_Contig123.20.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=55bp
MGTAVSASNTSPVETDEEGEEESAHTWVMTFNGAYSEQNVTFWESLTGAR
FPLPH
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mRNA from alignment at H-akashiwo_Contig123:1296976..1303912-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig123.20.1 ID=mRNA_H-akashiwo_Contig123.20.1|Name=mRNA_H-akashiwo_Contig123.20.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6937bp|location=Sequence derived from alignment at H-akashiwo_Contig123:1296976..1303912- (Heterosigma akashiwo CCMP452)
ATGGGCACAGCTGTCAGCGCATCAAATACATCACCAGTAGAAACAGATGA
GGAAGGCGAAGAAGAAAGTGCCCATACGGTATGTACACGTATGGCGCGCA
TGCCTAAAGCTAGCAGCAGCTCAATGCGCCATTCTTGATTGAAAAATATG
TCGCTGTATTATATATATGTGTATTATGCAGCGTGCACACATCTTCAATG
TCTCAGGTCTCTACCACTTGCAATGATGAAGCGTGCTGCATTAGTATTAT
CATATAATATGCATATGTATTTAGACAATTCCAGGAAACTCTAAGCAAGT
TAGGAAGGGAAGAAATCATGCACGACCGAAGTAAAATAGAGTATAGTATG
TATATATTATATATAGGAGTTAAATTTAAACAAAACAACCTACGCCTTGC
ATCTATGCAGATGTCCCTGTGGTAATATACCAAAAACCTACACATGAAAT
CCCAAAACCCAAATCAATACAGAACATCAAATACAGCACACCCCACTATC
TCTGGAAGAGAGTGGCAATCCCTCGCCATCCTCGAACCCCGAGCTCCTCC
ACCTCTTCCTGGAGCCCCTGGTCCGCCAGATCCACCGCTTTGATGGCGCG
AACTGCAAGCGGACACGCACAGTTGGTGACCGTTGAGAGGGCTTATGCCA
CTTTGCCGCGAGCCGAGCAGCGATGCGCCTGAGGAAGGCCTGCAAGGATT
GGTGGGCAATACCCTCCACAGTCACTATCAAGGGGCAGAAAGTAGCACGG
CGCTCTTCCGCAGCAGCCTTGTACAACTTCACCTTTTCCCGGGCAGAGGT
ATTGAGGGCATTCTGGTAAGAGATGTGCTGGGCTGCACGTCCAGGGCTGC
CAGCATGTATATATATATATATATATATGATGATGATGATGATTTTAGTT
TATTTCAAGTCCGCCTCTTGGATAACTACAAGGACCGAGCCCCGGCCTCC
ATATCACGGACCCTTCCACTTCTAGGTCCCACTTTTGCCCCCCCCATTCA
CCACCAAAACTTAAGAAAAAAAAAAAAAAAGAAAAAGACACAAAAAACAA
AAGCAACCACCCATGCGCCCCATGAAATCCCCTGTTGTTTGAGCCGCTCC
GCCTTTCTAGAAATCCAACCTCCCATTACTCCGCACAAACCTAGCCAGCC
TCCCCACCTCCTTCAACATGTTCGCCATACTTCCCTGCGCGTCATTCCGA
ACAATGAGGTCACTCAACTCTTGCCGCTGTGCACTTTATCATGGGCAGTG
GAGCAGATAATGCTCCACGTCCTCTCTCCCCTCTCCCACAGTTATCGACT
GCGCCCTGTCTCGCTTCCCCCGGCTGTGCAGATACCCCGCCAGATTACAA
TGTCCCGACAGCAGCTGAAGCACCCGATGGCCCCCCGCCTTTCCCCCCTT
CCAGACAGCCTCTTTGATGTCCTCCAACGTGGGAGCAAACCGCAGGTACG
CCTTATCCTCTCCCATGTCCATCCCCGATCCATGCTCAAGATCCCTCCAC
TCCTGTGCCCAGACCTCCCACGTCCGCTCTTTCGCCAGCCTCTTTGTGAA
GGCCTCGCACGTCCACCTCCACCTCTATCCCTGCATTCGCCGCTTCCTTC
GCCAGCTGGTCCGCCACCTCATTCCCCTCGTGCCCCTTGTGACCCGGGAT
GTACACAAACGAGTGCCGATCCTCCACCTCCTGCGCTATCTCACTCACCA
GGCGTGTCATTCTCCTCCCGCTCTTCAAGCAAGCCAGAACTGCCAACGTC
TGATGCCACCATCCACTCGCCGCCCCTCCCGGCTCCTTGGTCCATCGCGC
CCATTCTCTCTGCGCCAGCCCCTCCGCTTAGTACACCGTGCAGTAGTCAC
GCAGCCTATATAGTCCTCCCAACCTCCCTTCCTCTCCTATTGAATGCCAC
AAAAACCGCCCCCACTGAGCCGTCCTCCAACTTTGACCCATCCGTGAAGA
TCCTGCCTCCCCTCGCCCCCTCCAGCAGCTCCTCCCACAGCGTCCCGCGA
GCCCAGGGTGACCTTCACCGCCGTCCTGAGTGGTGGATACGGCAGCTCAT
GGTCCAGCATTATCCTCTCGAATGTCCCTGCAAGTCCACTCCCTTCCTCC
AGAGTCTCCCTGACAAACCTGAGATCACGGACTCCACTCGCATCCTTCCC
TCAGCGCCTCCACTCTGCGCCTCATTATCCCATGGGTGTACTGCAGCACC
ACCACCTCCTTTCCCACCAGATCCACCGGGGGAAGGCCCGCCAGCGCCAG
CGCCACCTCCGTCCTAGTCGACTTGAAGCACCTGGTCATCGCCTTCGCTG
CCATTGCCTGTACAGACCGAAGCTGTTTTACCACGCCTTTGCGCTTTAGC
GCCGCTCCCCAGACAGCCACCCCGTTCAGCAGCACCGGTTCCACCGCCTT
TGTAGAGCCTCTGAGCGACCGTGCGCCCCAGCCCCCACCTTGTTCTGGCG
CATACCGCAGCCGAGCCAGCAGTCTCCTCGCCTTCTGCGTGCAGTACTTC
CGCGTCGCTTGCCATGTCAACTTCTTGTCGAAGACAATCCCCAGCACTTT
CAGCTCTTTCTCCCACTCTCAGGCAGAAGCCATGCCATTCAGGCATGTCC
GGACAATCGAACACAATGTCCGGAAAACTACATCCGCCCCCTCCAGCTCT
GCTTCGCCCTTGCAAATCCAATGGCCCAGATCTTATCCCTTGCAAACCCG
ATCTTCGCCACCTTGCACCGCCGAACAGCTCCGCTAGAATCTGCCCAGCC
CACAGAACCAAATCTTCCATGTGCTCGGGTCGCCCTTAAGAGTGAAGCCA
TTATCATCGACAAAGCTAAAAGCCACCCGGCGATTCCTGCCGCTGCGTGG
CCCCACCACTCCTCCGCCCGCCCGCCCCTCCCAGCAGGCCACTACTTCCA
TCCCAGGCGCCTCCACGTCTGCCTCCAGCCCCCCCCCTCTGCCTGCGCCA
TTGCCTTCACCTCTGCCCCCCGGCCGCCCGCTCGCCCGCCCGCCGCCCCA
TCCCCTCCGCCAACCCCTGTCCACCTCCTTCTCTCCGGCGTCCGAGCTCC
TCCCAGCAGCTCCTCCCCAATCTCCTCCACCGCCCCTAGGTACCCTGTCA
CCATGTATTTTCCAGTCATCCGGCGACTTCTTCCCTCCCTGTGGAAACCC
CTTGTCAGCTGCTTGAGGCTTCAAACCCATTGACCCATAAGCTGCACTCC
CGTCCTCAGCTGGCTGGCCGAGAGGCAGAACAGACCAGGCGGGCAGTTCC
TCTCCGCCAGCCCGCCAACATAGCCGGATGCCAGCTCTTGTTGAAAGCCC
CGTCCCACGTCAAACACCACCGCCAGCAGCACCTGGCGTTGTCCATTGCT
TCTTCCGCCTCCGAGACCACATCCTCCACCATCATCTCCCTGGCCATGCC
GCCCTATATCCATACTGTCTGCGATGTAGCCTCCCCTCCTGCTCCGCCCA
CCACGACTGCCGTCTTGCTAACAGCCCCTCCAGATCCTTCCCCATCTCAC
AAAGCAGACAGATTAAGCGGTAAGCCTTTATCACGTCATATGAGGGCTTC
CCTGGCTTTGACAAGGCTATCTCCAGATCCACCTTCCACTTGCCGGAAAG
TACCCCAATCTCAGGCAGGCGTTATAGAGAGGCCGCAGGTGCGGCATCAA
GATTTCCCCGCCTCAGCCAGCACCTTCCCATACACCATGTCCGGTCCGGC
GCCTTGAACCCCCTCCGCCTCATCACGACCCACCTGACTTCCTCCTCCGT
CAGCGGCGGCTCCCCTCCTCCGGCAAAGCGCCTCCGGCACTCTTCCTCGA
ACGCCTGTGCCCTCCCTGCTAGTTGCGCCCGCGCCGCCAGCTCTTAGTCC
CCTCCTCCTCTCCCTCCGCAGCGTCCGGCCAGAAGCCATCTACCGCCGCC
TGCACCGACTGCTGCGGGTCCGCAATCACCCGACCTTCCGCGTCTTTGAT
TGTTGATACGGACTGGGCCTCTCTCCTTTCAATATCTTAAGGATCATGTC
CCAGGGGTTGTCCACCTCACTACAAAATTTCTTCCAGCTATCTGCCTTGG
CCCTTCTCATGGCTTTTTTTTTTTCCATTCAACCGCCATCCTCTGGTACT
CCTGCCTATGCCACTCCGACCTCCTTCTCAGCTTCCTTGCCCTATAAAAG
GCCTTTTTCACCGCCCCAGCTCCTCGGTCCACCATGGCATCGACTTCTTC
CACAGCGGCCTCTTCCTTCTGGGCGTGGCGCTGAATGCCTTCCAGAGGAT
CTCCGTCAAGATCTCAACCTGCTGATCCACTTCTCCTTCCGTCCCCGGCT
GCCCCTCCAGTAGCCCCCCCCCCCCCCTGCCGCCTGCAGCCCCCTCAGCA
CCTCCTCTTGCAGCTTTTTTACATCCATCCTCCGGTGCGAGTACAGGGGC
AATCTCCCGCGTGCTTGAGTCAATTTCCCCAACCCAAGATCGAACTGAAC
GTAGTTGTGGTCATGATCCGACTGCTCCGGGACCACCTTCCACCCCGATA
CCAGACCACGAGCCCCTCCCCGCCAAAACCACATCAATGTTGGTTGCCCC
CGTGACCCATCGTGCGTGGTGTACCTCGATCTCCTGTTCATCACCGCCAG
GCCCTGCTGTGCCGCAACGCCCCATCTCCTTCCCCTCCTGTCCTCCGATT
TGCTGTACCACAGTGCGGAGTGCGCATTCAGATCACAGGCCCATATCATC
CTGCGCCTGAGCCGCCCCCCAGTTGTGCATCTGCGCCCGTCGTCTGATAT
GGTGTTCGACCCCCACCTCTCCCGGTATGTCGTAGACACCAGATAGATTG
GCGGGGGGCTTTGAGCACCACTGCCGCCCGTGTGCCGATCCGTCATTTCC
CGTCCTGCAGCATAGGCAGCGTCTTCCCTATACACTATGGCGAAGCTGCG
ACCCTATCACCGCTCCGTCCCCATCAACGGCTGTGGCGCAATAAGCGCGT
GCATAGCCCTCCGGCAGCCCCGGCAGCCAGTCCTTCACGACATATGGTTC
CTGTATGAAGATTACGCCGACCTCCTCCCGCTTCACCTTCAGCCAGAGCG
CGTCCCATCGCTTCCTTCTTGTGCTGCAGGTTGATCTGCAGCATTCGCAG
GGTCCTGCTTTTGCGCCGGCCTCAGTCCCTCCCATCCCCCGCCCTCCCCT
CCCTCCCTCCTGAGCCCCTTTCCTGATCCTCGCCCATCTAGCATGATGAC
ACGATGGGAGATGGTCCAGTCAAAATGCATTCTTCTCCGCGCCCCACCTC
CTCCAGGCGTCCCGAGGCCCTGGCGCAGCGTCTTACCTCATGAGCGCTAT
GCCCTGTCACTCCACACGCCCCTTTTACCGTAGCTTCTATGGGTCCTGTT
TGTCCGCCCGCCGTCAGAGGGCAAGCATTCATCTGGTGGTTCGCCGCACA
GAAAGCGCACCTCTCCTGCACCGCCCTGCATCTGGCCGCTTTGTGCCCAT
CAAAGGAGCAGCACTTAAAGCACATAGCTGGGCCCCGCATCCTCCACCGC
ATTTTTTCTTATACGCCCCAGTGCACCCAATCACCGCAATTGTTGTGCAG
GGCAAAACGAACCCTGTCCGAGACCCGGATCATCGCCTTCTCCACGCCCT
TCCCGCGACCTGTAGCCGCTTGCCCTTCTCCTCATCATTACTCGATTTCT
CCCTCCGCCGCCCGGCTCTTGCCCCGCCTCCACCAGCACATCATTCATGT
GCTGAGCCACCTGCTGCAATGACATCTTGGGCGGCACATCATGCACCCAC
ACCCGATGCTGCCGCTCAGGCCCATCCCTCACCTTCACCCCCAGCCTCTC
CCCTCGCCCGCAGCTGCTTCTCTAGGCCTCCACACACCTCTGCGCTGCTA
AAGACCCACAAGACGTCCTTCCTTCCGTTTTCACCAGTGACGCCCACATC
CTCTACAACCTTATCAATCTCCCTGGTGTACTCTTCTGGATCCCGTCCGT
CCTCATGCTCCAAGCCCCTTACCACCTCCTGCATTTTCGGCTCTCGCCTC
CTCCTTATCCTTCAGTGGCTCCTCCTGAATCACTTGAAAGTCAAACGCTC
CTGGCTCCATCTCGCTTGAGCCGCTCGATAGCCTCCTGCCCAGGAACAGT
ACCCTTTGCACCTCCTTCCGCCCCCCAGGCCCGTGCTCTCGCTTGACTCA
CCCCGAGACCTGCTTCTCCAATCTGGCTTTATCTTCAACCAGCTGAATCA
CCCTCTGCTGCAAAAAGAGTAATCTCCCGCCCAGCCCATACTTATTCGCC
ATCGCTTCGCAATAAAATCCAAAACGAATTGCCTTTTTTTTTGGAGAAGC
TAAAATTCTTGACGCCAGTCTTCTCACTTACTGGCACATTTCTCAACATC
TCCCTCACTTTCTTTTCCTTGCCCACCAGACCGTCGGGGTCTCCTTCCTG
CTCTTTCGAGCGATCGCCCTGCTGCTCGCCAAACTCCTCGCCGAATCTTC
CAAAAGCTGAGAGCGATCCTGTTCTTCGTCCCCATTCCCATCCTCGTCTT
CCATTCTCCCACTCGCCTGTTCTCGGAGAAGTGCCGAACTTTCAGATTGC
TCGTTCTTCGCCTCCCCTGTACCCCCAGACTTCGCTGCAGCTGCTCTAGA
CCTGCTATTTTTTGCCATTTCGAATGCTTATCACGTCAATCGTCCTGTCA
CGCAGTATCGTTCCCACCGTCAGATTCTTAAAATCCAATCCTATTTTTCT
ATTACTCGGAACAATTCTATATATTATATATATATAATCACAATAACGTA
ATAATACATACAATAATATTGAACCTGCTTCAATGTATGTCACGTTCTAA
CTCTGTCTTTCTTTTGCCAATGCTCACCGCCTTACCAAACAACAATGCAG
TGGGTAATGACTTTTAATGGTGCATATTCAGAACAAAACGTTACTTTCTG
GGAAAGCTTGACTGGAGCACGTTTTCCTCTCCCTCAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig123:1296976..1303912-

>mRNA_H-akashiwo_Contig123.20.1 ID=mRNA_H-akashiwo_Contig123.20.1|Name=mRNA_H-akashiwo_Contig123.20.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=165bp|location=Sequence derived from alignment at H-akashiwo_Contig123:1296976..1303912- (Heterosigma akashiwo CCMP452)
ATGGGCACAGCTGTCAGCGCATCAAATACATCACCAGTAGAAACAGATGA
GGAAGGCGAAGAAGAAAGTGCCCATACGTGGGTAATGACTTTTAATGGTG
CATATTCAGAACAAAACGTTACTTTCTGGGAAAGCTTGACTGGAGCACGT
TTTCCTCTCCCTCAC
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