mRNA_H-akashiwo_Contig9.54.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.54.1
Unique NamemRNA_H-akashiwo_Contig9.54.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig9.54.1 vs. uniprot
Match: A0A7S4D679_HETAK (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D679_HETAK)

HSP 1 Score: 220 bits (561), Expect = 1.580e-69
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 MQLSRRAVLSRCAPKPLCSPFFYGSRGLSGSGSPLDAVQGSSAKPKPAKKAEIEHARLPGRHANDGRGGMGKFLFILGGAAAGTAYAIENGHTKYQNGVWEAYADLVD 324
            MQLSRRAVLSRCAPKPLCSPFFYGSRGLSGSGSPLDAVQGSSAKPKPAKKAEIEHARLPGRHANDGRGGMGKFLFILGGAAAGTAYAIENGHTKYQNGVWEAYADLVD
Sbjct:    6 MQLSRRAVLSRCAPKPLCSPFFYGSRGLSGSGSPLDAVQGSSAKPKPAKKAEIEHARLPGRHANDGRGGMGKFLFILGGAAAGTAYAIENGHTKYQNGVWEAYADLVD 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D679_HETAK1.580e-69100.00Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:3404382..3404810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size330
Hectar predicted targeting categoryother localisation
Exons2
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.4649107-CDS-H-akashiwo_Contig9:3404381..34045611681388029.4649107-CDS-H-akashiwo_Contig9:3404381..3404561Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 3404382..3404561 -
1681388029.477332-CDS-H-akashiwo_Contig9:3404660..34048101681388029.477332-CDS-H-akashiwo_Contig9:3404660..3404810Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 3404661..3404810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.54.1prot_H-akashiwo_Contig9.54.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 3404382..3404810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.54.1

>prot_H-akashiwo_Contig9.54.1 ID=prot_H-akashiwo_Contig9.54.1|Name=mRNA_H-akashiwo_Contig9.54.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=110bp
MQLSRRAVLSRCAPKPLCSPFFYGSRGLSGSGSPLDAVQGSSAKPKPAKK
AEIEHARLPGRHANDGRGGMGKFLFILGGAAAGTAYAIENGHTKYQNGVW
EAYADLVDK*
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mRNA from alignment at H-akashiwo_Contig9:3404382..3404810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.54.1 ID=mRNA_H-akashiwo_Contig9.54.1|Name=mRNA_H-akashiwo_Contig9.54.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=429bp|location=Sequence derived from alignment at H-akashiwo_Contig9:3404382..3404810- (Heterosigma akashiwo CCMP452)
ATGCAACTATCACGTAGGGCGGTGCTTTCGCGCTGCGCCCCAAAACCTCT
GTGTTCGCCGTTCTTTTATGGATCTCGTGGGCTCTCTGGTTCTGGGTCAC
CACTGGATGCTGTTCAAGGAAGCAGCGCCAAGCCCAAGCCAGCCAAAAAG
GTTGCGGTTGATTCTCCATCATTCTTCTGGCCAGAACCTGTTTTTCGAAA
CCATTACCAATATTAAATTGTTTTTTCTCCACTTTTTAACTCAAATCAGG
CTGAAATTGAACATGCACGCCTACCTGGCCGCCATGCAAACGATGGCAGA
GGAGGAATGGGGAAATTTCTCTTCATTCTTGGTGGTGCGGCTGCAGGCAC
TGCATATGCGATTGAAAATGGCCATACCAAGTACCAAAATGGCGTATGGG
AAGCTTATGCTGACCTTGTGGATAAGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig9:3404382..3404810-

>mRNA_H-akashiwo_Contig9.54.1 ID=mRNA_H-akashiwo_Contig9.54.1|Name=mRNA_H-akashiwo_Contig9.54.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=330bp|location=Sequence derived from alignment at H-akashiwo_Contig9:3404382..3404810- (Heterosigma akashiwo CCMP452)
ATGCAACTATCACGTAGGGCGGTGCTTTCGCGCTGCGCCCCAAAACCTCT
GTGTTCGCCGTTCTTTTATGGATCTCGTGGGCTCTCTGGTTCTGGGTCAC
CACTGGATGCTGTTCAAGGAAGCAGCGCCAAGCCCAAGCCAGCCAAAAAG
GCTGAAATTGAACATGCACGCCTACCTGGCCGCCATGCAAACGATGGCAG
AGGAGGAATGGGGAAATTTCTCTTCATTCTTGGTGGTGCGGCTGCAGGCA
CTGCATATGCGATTGAAAATGGCCATACCAAGTACCAAAATGGCGTATGG
GAAGCTTATGCTGACCTTGTGGATAAGTAA
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