mRNA_H-akashiwo_Contig890.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig890.9.1
Unique NamemRNA_H-akashiwo_Contig890.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig890.9.1 vs. uniprot
Match: A0A6V2XM98_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2XM98_HETAK)

HSP 1 Score: 277 bits (709), Expect = 6.640e-89
Identity = 160/163 (98.16%), Postives = 160/163 (98.16%), Query Frame = 1 
Query:    1 EWIKKFDDAQQILQQSAGKITWDVYMETLMRCEPEEISIKKIAQASRGGSSGAAKFKPSYFDDPIRSRSKPQPQDATAGYSETDYEVGTRNPIVERKVGKAAEDKPRSARSSFSSYFDSMATPAGNDAKDVDAEAKAPXXXXXXXXXXXXXXXGEAEPAPTKK 489
            EWIKKFDDAQQILQQSAGKITWDVYMETLMRCEPEEISIKKIAQASRGGSSGAAKFKPSYFDDPIRSRSKPQPQDATAGYSETDYEVGTRNPIVERKVGKAAEDKPRSARSSFSSYFDSMATPAGNDAKDVDAEAKA XXXXXXXXXXXXXXX  AEPAPTKK
Sbjct:   94 EWIKKFDDAQQILQQSAGKITWDVYMETLMRCEPEEISIKKIAQASRGGSSGAAKFKPSYFDDPIRSRSKPQPQDATAGYSETDYEVGTRNPIVERKVGKAAEDKPRSARSSFSSYFDSMATPAGNDAKDVDAEAKAXXXXXXXXXXXXXXXXXXAEPAPTKK 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig890.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V2XM98_HETAK6.640e-8998.16Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig890contigH-akashiwo_Contig890:401506..402753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size490
Hectar predicted targeting categoryother localisation
Exons5
Cds size489
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388026.1354682-CDS-H-akashiwo_Contig890:401506..4016081681388026.1354682-CDS-H-akashiwo_Contig890:401506..401608Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig890 401507..401608 -
1681388026.1448383-CDS-H-akashiwo_Contig890:401899..4019951681388026.1448383-CDS-H-akashiwo_Contig890:401899..401995Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig890 401900..401995 -
1681388026.153487-CDS-H-akashiwo_Contig890:402169..4022891681388026.153487-CDS-H-akashiwo_Contig890:402169..402289Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig890 402170..402289 -
1681388026.162218-CDS-H-akashiwo_Contig890:402484..4025841681388026.162218-CDS-H-akashiwo_Contig890:402484..402584Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig890 402485..402584 -
1681388026.1739833-CDS-H-akashiwo_Contig890:402682..4027531681388026.1739833-CDS-H-akashiwo_Contig890:402682..402753Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig890 402683..402753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig890.9.1prot_H-akashiwo_Contig890.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig890 401507..402753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig890.9.1

>prot_H-akashiwo_Contig890.9.1 ID=prot_H-akashiwo_Contig890.9.1|Name=mRNA_H-akashiwo_Contig890.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=163bp
EWIKKFDDAQQILQQSAGKITWDVYMETLMRCEPEEISIKKIAQASRGGS
SGAAKFKPSYFDDPIRSRSKPQPQDATAGYSETDYEVGTRNPIVERKVGK
AAEDKPRSARSSFSSYFDSMATPAGNDAKDVDAEAKAPRSAPASYLDAMA
PAAGEAEPAPTKK
back to top

mRNA from alignment at H-akashiwo_Contig890:401506..402753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig890.9.1 ID=mRNA_H-akashiwo_Contig890.9.1|Name=mRNA_H-akashiwo_Contig890.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1248bp|location=Sequence derived from alignment at H-akashiwo_Contig890:401506..402753- (Heterosigma akashiwo CCMP452)
GAATGGATCAAGAAGTTTGATGATGCACAGCAAATACTGCAACAATCCGC
AGGGAAAATTACATGGGACGTGTAAGTTTTGTCTGGCCATTATGGCCTGG
CTTTCAATCATTCAATGTATTACCATCATAGCAATATTCACTCACAGGTC
ATTTGCTGTCCCTTTACAGGTACATGGAGACATTAATGCGTTGTGAGCCC
GAAGAAATCTCAATCAAGAAAATTGCTCAGGCTTCAAGGGGTGGCAGTAG
TGGTGCTGCTAAGTTCAAGGTGAGTGATATCGGGGGCCATTTACATTTAC
TACTGCCGATCAGTCTGTACATGTAAAAAAATAACAAAGGTCAAAGAAGT
TGTTCTTTTGTTGAGCCTTTGTTGTAGTTTGCTTTGCCTTGAAATTTACA
AGTCCATGTTTTTGGTCGACTATACAACATCATTGAAAAACATTTACGCA
ACATATGTTGGCAGCCATCATATTTTGATGACCCTATACGATCACGGAGC
AAACCCCAGCCACAAGATGCTACAGCTGGATACTCGGAAACTGACTATGA
AGTGGGGACCCGCAATCCCATTGTTGAACGCAAGGTGGGCACCAGTCCCC
CCTAGCCAACCAACATGCGGTTCGTGTTTTTGTTGAATGTCCATCCCCAC
CCCTCAACTGCACTGCATCTCATCCTGAACACTCTGCGCCATTGCATCTC
AACCTGAAACGTCCTGTGCTACTGTTCTGGTCCTTGTGGGTGATTGGCCC
GAATGAAGGTTGGCAAGGCGGCGGAGGACAAGCCCCGGTCAGCACGGTCG
TCGTTTAGCAGTTACTTTGACTCGATGGCCACGCCGGCTGGGAACGATGC
CAAGGTGAGGCACAAAACTGAGGTTGCTCAGGCTTGCGGTCTCCCTTCTG
CTTGATCTTAAGGTGGCACAACATCTACCCCGCCTAATCCTTATTGTTGT
TTGGATCGGTTAGCTAAGATGACTAAGAGCCCGGTAAAAACTTAAAAAAT
ATTTCACGACAACAAATGACTGCGAGACTGGCAGTAAGCTCTCTTGGATA
CATATATTTTGAAATAACTCCTGAGTGGCCTGCTCTAAACTGAGGTTGCT
CAGCTTAACACTCGACCTGGGACCCCCCCCCCCTCCCAACTCTAGGATGT
CGATGCCGAGGCCAAGGCCCCGCGGTCCGCCCCGGCCAGCTACTTGGACG
CCATGGCACCGGCGGCCGGTGAGGCCGAGCCCGCGCCAACGAAGAAGG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig890:401506..402753-

>mRNA_H-akashiwo_Contig890.9.1 ID=mRNA_H-akashiwo_Contig890.9.1|Name=mRNA_H-akashiwo_Contig890.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=489bp|location=Sequence derived from alignment at H-akashiwo_Contig890:401506..402753- (Heterosigma akashiwo CCMP452)
GAATGGATCAAGAAGTTTGATGATGCACAGCAAATACTGCAACAATCCGC
AGGGAAAATTACATGGGACGTGTACATGGAGACATTAATGCGTTGTGAGC
CCGAAGAAATCTCAATCAAGAAAATTGCTCAGGCTTCAAGGGGTGGCAGT
AGTGGTGCTGCTAAGTTCAAGCCATCATATTTTGATGACCCTATACGATC
ACGGAGCAAACCCCAGCCACAAGATGCTACAGCTGGATACTCGGAAACTG
ACTATGAAGTGGGGACCCGCAATCCCATTGTTGAACGCAAGGTTGGCAAG
GCGGCGGAGGACAAGCCCCGGTCAGCACGGTCGTCGTTTAGCAGTTACTT
TGACTCGATGGCCACGCCGGCTGGGAACGATGCCAAGGATGTCGATGCCG
AGGCCAAGGCCCCGCGGTCCGCCCCGGCCAGCTACTTGGACGCCATGGCA
CCGGCGGCCGGTGAGGCCGAGCCCGCGCCAACGAAGAAG
back to top