prot_H-akashiwo_Contig885.5.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig885.5.1
Unique Nameprot_H-akashiwo_Contig885.5.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length76
Homology
BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: D8LRR0_ECTSI (Small nuclear ribonucleoprotein G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR0_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.570e-31
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = 0
Query:    1 MVKGGPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMDPV 75
            M KGGPDLKRYMDKTL+++LN NR V+GVLRG+D FMN+VLDET D  P++ ++K+GMV+IRGNS+VQFE +DP+
Sbjct:    1 MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTD--PASSDKKMGMVIIRGNSVVQFEILDPL 73          
BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: W4GJ25_9STRA (Small nuclear ribonucleoprotein G n=5 Tax=Aphanomyces TaxID=100860 RepID=W4GJ25_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.500e-30
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 0
Query:    5 GPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMDPV 75
            GPDLKRYMDKTL+I+LN NRKV G+LRGFDQFMNI LD+T++     +  K+GMVVIRGNSIVQFEC+D +
Sbjct:    6 GPDLKRYMDKTLSIKLNGNRKVSGILRGFDQFMNITLDDTIEEVSQTEANKIGMVVIRGNSIVQFECLDRI 76          
BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: H3G549_PHYRM (Small nuclear ribonucleoprotein G n=25 Tax=Oomycota TaxID=4762 RepID=H3G549_PHYRM)

HSP 1 Score: 109 bits (272), Expect = 8.660e-30
Identity = 51/76 (67.11%), Postives = 64/76 (84.21%), Query Frame = 0
Query:    1 MVK-GGPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMDPV 75
            MVK  GPDLKRYMDK L+++LN NRKV GVLRGFDQFMN+ LDETV+   + ++ ++GMVVIRGNSIVQFEC++ +
Sbjct:    1 MVKTAGPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETVEEVSATESNRIGMVVIRGNSIVQFECLERI 76          
BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: A0A484EFX9_BRELC (Small nuclear ribonucleoprotein G n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFX9_BRELC)

HSP 1 Score: 108 bits (271), Expect = 2.510e-29
Identity = 50/76 (65.79%), Postives = 64/76 (84.21%), Query Frame = 0
Query:    1 MVK-GGPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMDPV 75
            MVK  GPDLKRYMDK L+++LN NRKV GVLRGFDQFMN+ LDET++   + ++ ++GMVVIRGNSIVQFEC++ +
Sbjct:   26 MVKTAGPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETIEEVSTTESNRIGMVVIRGNSIVQFECLERI 101          
BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: A0A835YWI2_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.630e-29
Identity = 48/72 (66.67%), Postives = 62/72 (86.11%), Query Frame = 0
Query:    4 GGPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMDPV 75
            GGPDLKRYMDK L ++LN NR+V+GVLRG+DQFMNIVLDE V++   A+ + +GMVVIRGNS+++FE +DPV
Sbjct:    5 GGPDLKRYMDKRLHLKLNGNREVRGVLRGYDQFMNIVLDEAVEVPSKAEERLIGMVVIRGNSVIRFEVLDPV 76          
BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: A0A024GIK4_9STRA (Small nuclear ribonucleoprotein G n=3 Tax=Oomycota TaxID=4762 RepID=A0A024GIK4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.530e-29
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 0
Query:    5 GPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMD 73
            GPDLKRYMDK L+++LN NRKV GVLRG+DQFMN+ LDE ++   + +N K+GMVVIRGNSIVQFEC++
Sbjct:    6 GPDLKRYMDKRLSLKLNGNRKVSGVLRGYDQFMNVTLDEAIEEVSTTENNKIGMVVIRGNSIVQFECLE 74          
BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: A0A4D9CNZ1_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNZ1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 9.840e-29
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0
Query:    4 GGPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMD 73
            GGPDLK+Y+DK LA +LN NRKV GVLRGFDQFMNIVLDETVD   + D   +G+VVIRGNS+VQFEC++
Sbjct:    5 GGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVD-DGAPDKNDIGLVVIRGNSVVQFECLE 73          
BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: A0A067C2N0_SAPPC (Small nuclear ribonucleoprotein G n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C2N0_SAPPC)

HSP 1 Score: 105 bits (261), Expect = 4.120e-28
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 0
Query:    5 GPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMD 73
            GPDLK+YMDKTL I+LN +RKV GVLRGFDQFMNI L+E ++   + +  K+GMVVIRGNSIVQFEC+D
Sbjct:    6 GPDLKKYMDKTLCIKLNGSRKVSGVLRGFDQFMNITLEEAIEEVSTTEANKLGMVVIRGNSIVQFECLD 74          
BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: A0A1Y1I999_KLENI (Small nuclear ribonucleoprotein G n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I999_KLENI)

HSP 1 Score: 99.0 bits (245), Expect = 1.500e-25
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 0
Query:    1 MVKGG--PDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMDPV 75
            M KGG  PDLK+YMDK L I+LNANR V GVLRGFDQFMNIVLD +V+L+   +  ++GMVVIRGNS+V  E ++ +
Sbjct:    1 MSKGGQAPDLKKYMDKRLNIKLNANRTVVGVLRGFDQFMNIVLDNSVELTKGGEENEIGMVVIRGNSVVMIEALEHI 77          
BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: L8GY53_ACACA (Small nuclear ribonucleoprotein G n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GY53_ACACA)

HSP 1 Score: 97.8 bits (242), Expect = 3.250e-25
Identity = 44/69 (63.77%), Postives = 58/69 (84.06%), Query Frame = 0
Query:    5 GPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMD 73
            GPDL+RYMDK LAIRLNANR+V G+LRGFDQFMN+VL++TV+   S +  ++GMVVIRGNS++  E ++
Sbjct:    6 GPDLRRYMDKKLAIRLNANRRVSGILRGFDQFMNLVLEDTVEEVSSTEKNELGMVVIRGNSVILIEPLE 74          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR0_ECTSI3.570e-3168.00Small nuclear ribonucleoprotein G n=1 Tax=Ectocarp... [more]
W4GJ25_9STRA1.500e-3070.42Small nuclear ribonucleoprotein G n=5 Tax=Aphanomy... [more]
H3G549_PHYRM8.660e-3067.11Small nuclear ribonucleoprotein G n=25 Tax=Oomycot... [more]
A0A484EFX9_BRELC2.510e-2965.79Small nuclear ribonucleoprotein G n=1 Tax=Bremia l... [more]
A0A835YWI2_9STRA2.630e-2966.67Small nuclear ribonucleoprotein G n=1 Tax=Tribonem... [more]
A0A024GIK4_9STRA3.530e-2968.12Small nuclear ribonucleoprotein G n=3 Tax=Oomycota... [more]
A0A4D9CNZ1_9STRA9.840e-2971.43Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
A0A067C2N0_SAPPC4.120e-2869.57Small nuclear ribonucleoprotein G n=4 Tax=Saproleg... [more]
A0A1Y1I999_KLENI1.500e-2562.34Small nuclear ribonucleoprotein G n=1 Tax=Klebsorm... [more]
L8GY53_ACACA3.250e-2563.77Small nuclear ribonucleoprotein G n=1 Tax=Acantham... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 6..71
e-value: 4.8E-19
score: 79.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 7..68
e-value: 3.9E-20
score: 71.3
NoneNo IPR availableGENE3D2.30.30.100coord: 3..75
e-value: 4.3E-22
score: 79.5
NoneNo IPR availablePANTHERPTHR10553:SF29SMALL NUCLEAR RIBONUCLEOPROTEIN Gcoord: 6..75
IPR044641Sm-like protein Lsm7/SmGPANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 6..75
IPR034098Small nuclear ribonucleoprotein GCDDcd01719Sm_Gcoord: 4..73
e-value: 1.76065E-37
score: 117.618
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig885contigH-akashiwo_Contig885:162244..162709 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig885.5.1mRNA_H-akashiwo_Contig885.5.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig885 161913..162762 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig885.5.1 ID=prot_H-akashiwo_Contig885.5.1|Name=mRNA_H-akashiwo_Contig885.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=76bp
MVKGGPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPS
ADNQKVGMVVIRGNSIVQFECMDPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR044641Lsm7/SmG-like
IPR034098Sm_G
IPR010920LSM_dom_sf