mRNA_H-akashiwo_Contig848.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig848.3.1
Unique NamemRNA_H-akashiwo_Contig848.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig848.3.1 vs. uniprot
Match: A0A7S3XR38_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR38_HETAK)

HSP 1 Score: 562 bits (1448), Expect = 2.000e-199
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = -2
Query:   64 IYLFFTLMGCLVGFIQVSALLLIRLLFKETAGPWLQSSALTFQLGCVTFPILKDTLSFHLMYHILAVLMALISLYIFSTKKAIIPKLQSPSLRTPGGDAEVQEGSSMGGEGEKSFGRGDVISAFCLFFLGGLIVETTTYLESYIEDVGASVDSDDALVALTSTSLLAQMITLYLQQDASTGSMVTYFISCAAAGLVCQLPPLIWSASSTTALWVTIFGTGLFFGPCWGLVFDVWDRFTAEPTAWGSALLNLGLQGGCGFYASGAYWVWSQRGWPRVLLCSNALAFAAA 927
            IYLFFTLMGCLVGFIQVSALLLIRLLFKETAGPWLQSSALTFQLGCVTFPILKDTLSFHLMYHILAVLMALISLYIFSTKKAIIPKLQSPSLRTPGGDAEVQEGSSMGGEGEKSFGRGDVISAFCLFFLGGLIVETTTYLESYIEDVGASVDSDDALVALTSTSLLAQMITLYLQQDASTGSMVTYFISCAAAGLVCQLPPLIWSASSTTALWVTIFGTGLFFGPCWGLVFDVWDRFTAEPTAWGSALLNLGLQGGCGFYASGAYWVWSQRGWPRVLLCSNALAFAAA
Sbjct:   73 IYLFFTLMGCLVGFIQVSALLLIRLLFKETAGPWLQSSALTFQLGCVTFPILKDTLSFHLMYHILAVLMALISLYIFSTKKAIIPKLQSPSLRTPGGDAEVQEGSSMGGEGEKSFGRGDVISAFCLFFLGGLIVETTTYLESYIEDVGASVDSDDALVALTSTSLLAQMITLYLQQDASTGSMVTYFISCAAAGLVCQLPPLIWSASSTTALWVTIFGTGLFFGPCWGLVFDVWDRFTAEPTAWGSALLNLGLQGGCGFYASGAYWVWSQRGWPRVLLCSNALAFAAA 360          
BLAST of mRNA_H-akashiwo_Contig848.3.1 vs. uniprot
Match: A0A7S3XVX1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVX1_HETAK)

HSP 1 Score: 313 bits (802), Expect = 5.570e-101
Identity = 161/306 (52.61%), Postives = 217/306 (70.92%), Query Frame = -2
Query:   16 IYLFFTLMGCLVGFIQVSALLLIRLLFKETAGPWLQSSALTFQLGCVTFPILKDTLSFHLMYHILAVLMALISLYIFSTKKAIIPKLQSPSLRTPGGDAEV--QEGSSMGGEGEKSFGRGDVISAFCLFFLGGLIVETTTYLESYIEDVGASVDSDDALVALTSTSLLAQMITLYLQQDASTGSMVTYFISCAAAGLVCQLPPLIWSASSTTALWVTIFGTGLFFGPCWGLVFDVWDRFTAEPTAWGSALLNLGLQGGCGFYASGAYWVWSQRGWPRVLLCSNALAFAAAAACTLALLTVPPGSRK 927
            I+LFFTLMG +VG +Q  ALLLIR+LF  TAGPWLQ+++  FQ G V F IL   + FH MY+ L V  ALI LYI ST K ++P+LQ   L+T G D     +E S   G+ +K+F  GDV+S+  +FFLGGLIVE TTYL+ +++DV   V++++AL+ LTS SLLAQ+  ++LQ+ AS+ +++ YF+     G+ CQLPP +W A+S  ALW T+ GTG FFGPC GLVFD+WDR+T  PTAWGSALLNLGLQGGCGFY++GA+ +W+    P VLL +NA+A A+AA    ++L +    R+
Sbjct:  122 IFLFFTLMGAIVGLLQCGALLLIRMLFSSTAGPWLQAASFAFQFGVVAFSILMKLIPFHYMYNYLTVATALIGLYILSTLKILVPRLQDQFLQT-GNDKSTAGEEESGSAGQAQKAFATGDVLSSLAVFFLGGLIVENTTYLQPFLQDVNPGVNANNALILLTSASLLAQIFMVFLQRGASSAAVMGYFLGACLCGVACQLPPFVWGAASDAALWATVVGTGFFFGPCVGLVFDLWDRYTPVPTAWGSALLNLGLQGGCGFYSNGAFGIWTLINDPLVLLYANAVAMASAAMFGSSMLCISTAERR 426          
BLAST of mRNA_H-akashiwo_Contig848.3.1 vs. uniprot
Match: A0A7S3UNI0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNI0_HETAK)

HSP 1 Score: 81.3 bits (199), Expect = 1.120e-15
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = -2
Query:   76 QLPPLIW------SASSTTALWVTIFGTGLFFGPCWGLVFDVWDRFTAEPTAWGSALLNLGLQGGCGFYASGAYWVWSQRGWPRVLLCSNALA 336
            QL P+++      SA   + LW+   G+GL +GP  GL+FD+WDR T EPTAWG+A LN G+  G GFY++G + VW+    P VL  +N LA
Sbjct:   12 QLVPVLFASAEGPSALRRSVLWLFALGSGLGWGPLPGLLFDLWDRCTPEPTAWGAAALNFGIYAGSGFYSNGMFAVWTSLRDPLVLPWANFLA 104          
BLAST of mRNA_H-akashiwo_Contig848.3.1 vs. uniprot
Match: A0A6V1P7C3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7C3_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 7.410e-14
Identity = 59/174 (33.91%), Postives = 87/174 (50.00%), Query Frame = -2
Query:   64 RGDVISAFCLFFLGGLIVETTTYLESYIEDVG--ASVDSDDALVALTSTSLLAQMITLYLQQDASTGSMVTYFISCAAAGLVCQLPPLIWSASSTTALWVTIFGTGLFFGPCWGLVFDVWDRFTAEPTAWGSALLNLGLQGGCGFYASGAYWVWSQRGWPRVLLCSNALAFAAA 579
            R D    F LF++ G IV TT+YL+SYI DVG   +V+ D  L       +  Q++ L LQ       +          G++  +  L +  SS   LW++I   G   GP +G VFD+W+R T E T  GSA++  G+ G  G ++   + +W   G   VL+  N L+FA A
Sbjct:   12 RVDYCIGFMLFWIAGCIVSTTSYLKSYIPDVGLGGAVEPDALLAVFMVLCIAGQLVALALQAGMGLRQLRAQMSLLFGFGMLSMVVVLAFP-SSKMVLWISILIYGFCVGPLYGYVFDLWNRST-EVTEMGSAVVIFGVAGS-GVFSYLTHTIWLAVGSCSVLMVVNGLSFAVA 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig848.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3XR38_HETAK2.000e-199100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XVX1_HETAK5.570e-10152.61Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3UNI0_HETAK1.120e-1546.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V1P7C3_HETAK7.410e-1433.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig848contigH-akashiwo_Contig848:306251..307178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size930
Hectar predicted targeting categoryother localisation
Exons1
Cds size654
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388010.6005702-CDS-H-akashiwo_Contig848:306250..3069041681388010.6005702-CDS-H-akashiwo_Contig848:306250..306904Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig848 306251..306904 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388010.6118698-UTR-H-akashiwo_Contig848:306904..3071781681388010.6118698-UTR-H-akashiwo_Contig848:306904..307178Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig848 306905..307178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig848.3.1prot_H-akashiwo_Contig848.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig848 306251..306904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig848.3.1

>prot_H-akashiwo_Contig848.3.1 ID=prot_H-akashiwo_Contig848.3.1|Name=mRNA_H-akashiwo_Contig848.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=218bp
RCRHRLPAPWGHSQQGQGAGRGGGKGQRVGAEQHPRPAPLGPDPVGPARV
EPAAALEAQVQQRAAPGGRLGGEPVPDVEDQAPAGPEEEARPEDCHPERR
GRGGAPDEGGQLADQPGRGAADEIGHHRSGAGVLLEVKRDHLGQETSGGE
GDQGIVAVDRCPHILNVTLQVCGCLYNEASQKEKAKGGNHVSPSEGLFPL
ATHAASLLHLSVTTRCP*
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mRNA from alignment at H-akashiwo_Contig848:306251..307178+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig848.3.1 ID=mRNA_H-akashiwo_Contig848.3.1|Name=mRNA_H-akashiwo_Contig848.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=928bp|location=Sequence derived from alignment at H-akashiwo_Contig848:306251..307178+ (Heterosigma akashiwo CCMP452)
CGTTGCCGCCACCGCCTTCCGGCTCCCTGGGGGCACAGTCAGCAGGGCCA GGGTGCAGGCCGCGGCGGCGGCAAAGGCCAGCGCGTTGGAGCAGAGCAGC ACCCGCGGCCAGCCCCGCTGGGACCAGACCCAGTAGGCCCCGCTCGCGTA GAACCCGCAGCCGCCCTGGAGGCCCAGGTTCAGCAGCGCGCTGCCCCAGG CGGTCGGCTCGGCGGTGAACCGGTCCCAGACGTCGAAGACCAGGCCCCAG CAGGGCCCGAAGAAGAGGCCCGTCCCGAAGATTGTCACCCAGAGCGCCGT GGTCGAGGAGGCGCTCCAGATGAGGGGGGGCAGCTGGCAGACCAGCCCGG CCGCGGCGCAGCTGATGAAATAGGTCACCATCGATCCGGTGCTGGCGTCC TGCTGGAGGTAAAGCGTGATCATCTGGGCCAGGAGACTAGTGGAGGTGAG GGCGACCAGGGCATCGTCGCTGTCGACAGATGCCCCCACATCCTCAATGT AACTCTCCAGGTATGTGGTTGTCTCTACAATGAGGCCTCCCAGAAAGAAA AGGCAAAAGGCGGAAATCACGTCTCCCCTTCCGAAGGACTTTTCCCCCTC GCCACCCATGCTGCTTCCCTCCTGCACCTCAGCGTCACCACCAGGTGTCC TTAAAGATGGCGACTGAAGCTTGGGGATGATTGCTTTCTTGGTTGAAAAG ATGTACAAAGATATCAACGCCATAAGCACTGCTAAGATATGGTACATGAG ATGAAATGATAACGTATCTTTCAGGATAGGGAAAGTGACACATCCAAGTT GAAAGGTTAAAGCTGAGCTCTGCAACCAGGGGCCTGCAGTTTCCTTAAAA AGTAACCGTATCAGCAGTAGGGCAGAAACTTGGATAAAACCAACAAGGCA GCCCATGAGCGTGAAAAACAGATAGATG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig848:306251..307178+

>mRNA_H-akashiwo_Contig848.3.1 ID=mRNA_H-akashiwo_Contig848.3.1|Name=mRNA_H-akashiwo_Contig848.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=654bp|location=Sequence derived from alignment at H-akashiwo_Contig848:306251..307178+ (Heterosigma akashiwo CCMP452)
CGTTGCCGCCACCGCCTTCCGGCTCCCTGGGGGCACAGTCAGCAGGGCCA
GGGTGCAGGCCGCGGCGGCGGCAAAGGCCAGCGCGTTGGAGCAGAGCAGC
ACCCGCGGCCAGCCCCGCTGGGACCAGACCCAGTAGGCCCCGCTCGCGTA
GAACCCGCAGCCGCCCTGGAGGCCCAGGTTCAGCAGCGCGCTGCCCCAGG
CGGTCGGCTCGGCGGTGAACCGGTCCCAGACGTCGAAGACCAGGCCCCAG
CAGGGCCCGAAGAAGAGGCCCGTCCCGAAGATTGTCACCCAGAGCGCCGT
GGTCGAGGAGGCGCTCCAGATGAGGGGGGGCAGCTGGCAGACCAGCCCGG
CCGCGGCGCAGCTGATGAAATAGGTCACCATCGATCCGGTGCTGGCGTCC
TGCTGGAGGTAAAGCGTGATCATCTGGGCCAGGAGACTAGTGGAGGTGAG
GGCGACCAGGGCATCGTCGCTGTCGACAGATGCCCCCACATCCTCAATGT
AACTCTCCAGGTATGTGGTTGTCTCTACAATGAGGCCTCCCAGAAAGAAA
AGGCAAAAGGCGGAAATCACGTCTCCCCTTCCGAAGGACTTTTCCCCCTC
GCCACCCATGCTGCTTCCCTCCTGCACCTCAGCGTCACCACCAGGTGTCC
TTAA
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