mRNA_H-akashiwo_Contig815.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig815.4.1
Unique NamemRNA_H-akashiwo_Contig815.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig815.4.1 vs. uniprot
Match: A0A7S4DHX0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHX0_HETAK)

HSP 1 Score: 74.3 bits (181), Expect = 5.350e-15
Identity = 39/57 (68.42%), Postives = 39/57 (68.42%), Query Frame = 3 
Query:    3 DHQGIAPLHMAAYNGHVNSVELLLSFGASVDIPCKAFGNSTALILATKQGHLRTVQV 173
            DHQGIA                  SFGASVDIPCKAFGNSTALILATKQGHLRTVQV
Sbjct:   87 DHQGIAXXXXXXXXXXXXXXXXXXSFGASVDIPCKAFGNSTALILATKQGHLRTVQV 143
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BLAST of mRNA_H-akashiwo_Contig815.4.1 vs. uniprot
Match: A0A425CF07_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CF07_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.190e-5
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 3 
Query:    3 DHQGIAPLHMAAYNGHVNSVELLLSFGASVDIPCKAFGNSTALILATKQGHLRTVQV 173
            D++G AP+H AAYNGHV S+  LL  GASV +      + TAL +A  QG++  +++
Sbjct:  125 DYRGWAPIHGAAYNGHVGSLTALLDAGASV-VTQLTKRHETALHVAASQGNIEAIEL 180
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BLAST of mRNA_H-akashiwo_Contig815.4.1 vs. uniprot
Match: Q2GUF6_CHAGB (Clr5 domain-containing protein n=1 Tax=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) TaxID=306901 RepID=Q2GUF6_CHAGB)

HSP 1 Score: 47.8 bits (112), Expect = 9.140e-5
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 3 
Query:   21 PLHMAAYNGHVNSVELLLSFGASVDIPCKAFGNSTALILATKQGHL 158
            PLH+AAY GH+ +V+ L+  GAS+D+P +  G +TAL LA   GHL
Sbjct:  452 PLHVAAYWGHLLTVQFLIDAGASLDLPAE--GGATALWLACCHGHL 495
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig815.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4DHX0_HETAK5.350e-1568.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A425CF07_9STRA7.190e-543.86Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
Q2GUF6_CHAGB9.140e-552.17Clr5 domain-containing protein n=1 Tax=Chaetomium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig815contigH-akashiwo_Contig815:314164..318774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog83344.XP_007921702.1
Preferred nameANKRD46
PFAMsAnk_4
Model size174
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue0.000572
EggNOG OGsCOG0666@1|root,KOG0508@2759|Eukaryota
DescriptionEP4 subtype prostaglandin E2 receptor binding
Cds size144
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387996.2142227-UTR-H-akashiwo_Contig815:314163..3141921681387996.2142227-UTR-H-akashiwo_Contig815:314163..314192Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig815 314164..314192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387996.2256336-CDS-H-akashiwo_Contig815:314192..3142441681387996.2256336-CDS-H-akashiwo_Contig815:314192..314244Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig815 314193..314244 +
1681387996.2375484-CDS-H-akashiwo_Contig815:318682..3187741681387996.2375484-CDS-H-akashiwo_Contig815:318682..318774Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig815 318683..318774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig815.4.1prot_H-akashiwo_Contig815.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig815 314193..318774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig815.4.1

>prot_H-akashiwo_Contig815.4.1 ID=prot_H-akashiwo_Contig815.4.1|Name=mRNA_H-akashiwo_Contig815.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=48bp
MAAYNGHVNSVELLLSFGASVDIPCKAFGNSTALILATKQGHLRTVQV
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mRNA from alignment at H-akashiwo_Contig815:314164..318774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig815.4.1 ID=mRNA_H-akashiwo_Contig815.4.1|Name=mRNA_H-akashiwo_Contig815.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4611bp|location=Sequence derived from alignment at H-akashiwo_Contig815:314164..318774+ (Heterosigma akashiwo CCMP452)
TTGATCACCAAGGGATCGCCCCCCTTCACATGGCTGCCTATAATGGACAT
GTGAATTCAGTGGAGCTGTTGTTGAGCTTTGGTAAGTAACAGCAAAAAAT
ATATAGTGCACTTTGATGATCCCGCGATAGAATCAACAAAAAAGAAAGAT
TAAAAAAACAGATAACAACAACAACACCACCTTGATGATGTCCTAAAGGT
ATATGTTGTAAATTATGTCAGTTTTATGTGAGAGAGATTGTAATGGTTTT
TTTTTTGTTTTTTTGTACGGGTGTGTGAACAGTAGATGAATGAAGAATGC
TTTAATCATTTATCACAACATGTAGTTATCCAAGTGGTGGACTTGAAATA
AACCAAAATCATCATCATCATCATCATGGTATGCCAACTGCCTGACTTTC
GCTCTTCTTGGAGCACATCAGCTGACAATAACTGCACGCACTGGCTGACT
GCTACATCTTCAATTCTTCCACTATAGTAGTTCACAGATGGTTTTGGCAG
AGGTGGTCCTAATGACGAGGCCTCTGCTGCTAACAGCTGTTGGTGTTGCA
CTGTAAAGACTGTTCTTCTGCTGAGTCATCACAATGTAATATTGCTGCAA
GCCATCAACAACTAAAAAAGTTATACAGGTGAAATAGTTGCTGATGATTT
GTTTCTTTCTTGCATCCACTCGGTGGAAGCCAGAAGTGAGTCTCAAATTT
CAAGCTCCAAATCTTTTGCATGAAAAAGCTGAGCTCGGCATATGTACTTT
TATTTGAGATTCGGTCCCGTACTGATTCGTCTGCCATTTTGAGGATATCC
AATGCCCTCGCCAAGGACGTCGAAAAAATAATGTTGTGATAGGCACAACG
CATTGGGGCCATTTGAACACTCACAATGAATGAGGAAATCTTGTTGAAAA
AAGCTGGCATTTGACTGGAGAAACTTGAGAAACTTGAGTTTTCAACTGCA
ATGCCCATATGGCTGCAAAGTCGAGAAGGTCGCCAGGGACCTTCAAAGAT
CACTGGCAGTGCCCATGTATACATGAGCGGGCAGATACCATGACCGAGGT
CCTCGGTATTCAGGGTAAAAACGCATAGTCAAGCTTTAGCTGCTTTCATT
ATATCGCCAGGGTTATGTGAGAGATTGTGATGTTTTTTTTTCTGTTTTTT
GGTATTTTTGACCGTAGAGTGAACAGTAGATGAATGAAGAATGCTTTAAT
TAGTTATATAAGGTCGTGTTGGCCTAGCTGTCGAGTAGATCGGCTTTCGG
ACTTTCAAGCTGTGGCTGCGGGTGAGTGGGATCGAATCCCTATGCCCTGA
CTCGTGATGAGTCATCGATTTGTCCGCAAGCCGTGGTGAGGCACTTTCCT
GGAACGTTCTTGAACTATCCTTGAGAATTTCTCAAGAGTTGTCGGTTCGG
TCGGAGACCTACTCTGGATGTATTAATCATGATTGATAATATTCGGGGCG
TTTCACGGAATCGTCCTCATGGAAATGTAAGGCGTTGCAGTTGCATCCGT
AACTGACAGCGTTGAAAACGCGAGCAGGCAGCCAGTGCTCGGGAGGCTGG
TCAGAGTTGAGATTCCTCACAACTGCAACTCGAAAACCATAAACGTCATG
GCGAGAAGTACCTAGTAATTCGCAACAAGAGGGAGAATGACCATGTCTAT
GGGAACTTCCTCAACTCACAGGGTGGAGACAGATGTACTGATCATGGTAG
TGGGTTGTCGGAGGAAGCGCCAACGGATGAGACAACGGAAAGACTGGACC
TGGGCCAAAGGGCAAACAGAGTATGTAGGTCTTCGCACAGCTGGAGCTTC
CGCTGGTCAGTAGCGATACGCTGTCCGTCAAAGTACTAAGAAGCCATGGC
ACGTGCAAAAAGACATTGGTTGTGGCTCAGGAAGTGAGAGGGTCACATTG
CATGGTACAAACGTAGAAAGAAAAAAATCACAACATGGTACTTATGCCAA
CAGCCTGACTTTGGCGCTTATTGGAGCACATCAGCTGACAATAACCGCAC
TCACTGGCTGACTGCTATATCTTCAATTCTTCTAACTATAGTATTCACAG
ATGGCTGTGACAGAGGTGGCCGTCACATACAATTTAATATTTGTCTACAG
TTGTCTGGCACCAGCCAGTCACACAGTATTCCGTGTAGTTGCCCAGTGGC
ATGACCTACTACCTAGCATTCCCGGGTTTGATCCTTAGTAGTTGCCAACC
ATGTTGCTTTACAACAGGTTTTCTTCTTTTATTTCTTCTCGTCTAAGAAG
AAGAAGAAGCTGCAAATCCGTTCTTATTGGTTGGAGACACAAACATGTAG
TATGTCTGTTTTCTGACTTAGCAAAAAGGAGTGCGATCAGCACAAAGAAG
AAGAAGTGTGGTCAGGATTAAGGGTGCCTGGCGACACTTGGACCTCTCAA
GGAACTGCAATATAACTTTTGAACCATAAACAGTGAGAAGAAGCTGCTTG
GTGGTTATGTTTTAGGGGTCATTCGACAGCAAAAAACACACTGATAACAG
CAAACAAGCCTTATCTGGCATTGGTTTTGATCATTTGAAAAAAGTTTTTT
TTTTATCAAAGCTAATATTTCTAGATTGGCTCATAGGATTTCTTCCATAC
TTGGACAGCAAGTTTCCATGGTAGTGCTCTAGCCTCCTGTAGGGCCTGGG
GCTGTGCAAACCCTTTATACTTTCAACATTTCCAAAAGTGAAGTGCACTG
TCAAAGGTTTTGAACCATCTTCAAAAGGGTTTCATAGGCGTTGAAGACTA
TCCATCTCTTCCTTAGGATGTGTCCAAGCATGCCCCAAGTTGGGTGGGTA
TTGTATGTGCCGTTCTTGATATCCATTCGCCCAAAGTTTCTGTCCTGTTT
CCATCCAGAGATAGACACTTTCTTCACAACCAATGACTTCTTTCATCAAC
AAAAAAAAACGGTTATTTTTTTTTTTTTCGGGTTCTTGGCGGGCGGCACA
CAACAACCACTGACGTGTTGTGGTCGTCATCATCATCAACCAACCAAATC
ATGTGATCCGATATTCTGAGAACAAAACGTGGTTTGCAAATACAAAATTA
TTTTTTTTTTCATGATGAGCGATATAGCTCGTGCGGCGCATTGCATGCTT
GAAGTTGCAGTTGAGGCCGTGGTTGTGGAAAAGATCAGGTAGAAGAGAAA
GATCAACTGCCCTCTGGCGATCCTTCTGGAGACAGTGGTTTCGTCCATGA
AACCAGTTTCTCAACAGCAAGAATCAGTTTGTCAGCGGCAACAAAGTGGT
TTTTGAAGGGGAAATAAAGCTTGACGAAATTCCAAAAATTAAACGTGTCA
TTTCTGAAAAGTGCAGTTTTTGTATGGAAATTTCCTGCTTATGCAGATCA
TTTTCCAAATTTACACTAGAATTTAAACCAGTTAAGAAAAAGAAGTGAAT
TGTGTAAACTATAAAGAAACTTGCCGTATTTTAACTGCAAATCAAAATTT
TATCAAGTACATATTTTTTAACAGAAAACCCTCATTCTATATGTATCCCC
TTTCCGGTCCAAAATGAAAAATTCCATATTTGTTTAGTGGGGTTTGGCTC
AACTCCATAAACAACAAACCTACTGCAGCAGCCTTGGTGGGAAGATGGAA
ACAGGTGATCTTATCTGAATGGAAGCAAGCTATCACTGAGTCGGGAAATG
ATCAAAGTGGCTACAGGTGAGCGATTTGAGTATTGGCTAGCTCTGTAGAA
AAGACTGAAGGCCACGTGATTCCATTTAGATGATCCTCTTCCATGGTAAA
GTCCACGATATTTGGGGCTGTTTTAGGTAAAAGTAGTAGAGTGATGGTTC
GTGCTCGTTTCATCAAATATTTATTTGGCCTGAGAAGATTGAATTCATTC
ATTCAATAGGTAAAGACTCGAATATATATTGTGATCGGTACCTTAGGTGA
ATGTTGAGGTGCCGAGCAAAAACGTCTAAGTACTTTCTTGGCATTATAAG
AGTAAAACTCTGTTCTCTTGCACCTTCCAGTAGAAAACGGTCCGTGTCTA
TGCCCCCCTACCTTCCTGCTGTGATTATCGTATACCCCACTGTACCTTTC
TTTGCTTGTTGCTGAACTTGAAGAAAATAGAACAGGTGGTCGTGCGTAAA
ACTCCCGTCGCTTTCTTTTCCTTCTGGCAAAATCTTTGCGGTGAACGATT
GCAGTGCTCCGAAAAACAGAGGGGCCATAAATGAAAGAATAATATATTTA
TTTTTCGGACAAAAAGGCGTTTGAAAAGCGAGGCCAATAATCGCTTTTTT
CGGGTGGGAAGTGTCTAAACAAGTATCAAACAGGCACCCTTAAGAGAGTG
TACGTGAAGTGTTGTTCTTGTTGTTATCGTAGGAGCGCAGCAGCAGAATA
GCAGCGCATATCATCATCAAGATTCGTCTTGGAAGAAAATTTCAAGAGGA
CTTGGTCTTCACATCAAAGGCTTTTGGCCCCACCTCATCATGGTATTGAG
CCACTATAGCTTTGTCGAGCACCTTTACGATCATTATTATGTAACTTTCA
TTTTTGATGACAACCACAGGTGCTTCTGTTGATATACCTTGCAAGGCTTT
TGGCAATTCAACCGCTCTCATTCTTGCCACAAAACAGGGGCATTTACGTA
CTGTTCAGGTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig815:314164..318774+

>mRNA_H-akashiwo_Contig815.4.1 ID=mRNA_H-akashiwo_Contig815.4.1|Name=mRNA_H-akashiwo_Contig815.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=144bp|location=Sequence derived from alignment at H-akashiwo_Contig815:314164..318774+ (Heterosigma akashiwo CCMP452)
ATGGCTGCCTATAATGGACATGTGAATTCAGTGGAGCTGTTGTTGAGCTT
TGGTGCTTCTGTTGATATACCTTGCAAGGCTTTTGGCAATTCAACCGCTC
TCATTCTTGCCACAAAACAGGGGCATTTACGTACTGTTCAGGTA
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