mRNA_H-akashiwo_Contig814.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig814.3.1
Unique NamemRNA_H-akashiwo_Contig814.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig814.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig814contigH-akashiwo_Contig814:178214..182055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size317
Hectar predicted targeting categoryother localisation
Exons3
Cds size285
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387995.9692662-UTR-H-akashiwo_Contig814:178213..1782431681387995.9692662-UTR-H-akashiwo_Contig814:178213..178243Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig814 178214..178243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387995.982805-CDS-H-akashiwo_Contig814:178243..1783951681387995.982805-CDS-H-akashiwo_Contig814:178243..178395Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig814 178244..178395 +
1681387995.9919279-CDS-H-akashiwo_Contig814:178699..1787241681387995.9919279-CDS-H-akashiwo_Contig814:178699..178724Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig814 178700..178724 +
1681387996.0034356-CDS-H-akashiwo_Contig814:181947..1820551681387996.0034356-CDS-H-akashiwo_Contig814:181947..182055Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig814 181948..182055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig814.3.1prot_H-akashiwo_Contig814.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig814 178244..182055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig814.3.1

>prot_H-akashiwo_Contig814.3.1 ID=prot_H-akashiwo_Contig814.3.1|Name=mRNA_H-akashiwo_Contig814.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=95bp
MKNDDLRNCRYSERKRRGRPRSRWDNQLEIMAVTSGVSRAHSAYLDHYCR
RFGMVYDPQYYGACLGRLRQQGVEGLDRTDQLVALPASERAVAAT
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mRNA from alignment at H-akashiwo_Contig814:178214..182055+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig814.3.1 ID=mRNA_H-akashiwo_Contig814.3.1|Name=mRNA_H-akashiwo_Contig814.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3842bp|location=Sequence derived from alignment at H-akashiwo_Contig814:178214..182055+ (Heterosigma akashiwo CCMP452)
GATGGTGAAAAGCCCTGCTGTGGGAGTTGCATGAAAAATGATGATTTGAG
AAATTGCCGCTACAGCGAAAGAAAAAGGAGGGGGCGGCCACGAAGTCGAT
GGGATAATCAACTAGAAATTATGGCAGTGACATCAGGTGTATCCAGAGCC
CATTCTGCGTACCTTGATCATTACTGCAGAAGGTAATTGAGCCTTTTCAC
GCCTCAATTGATTGGGCGAGAAGGAGTAGATCAGTGCCACATACAGGAAT
GATGAACGATGATATAGAAACAACCCTGTGTGTGTCTTACGTATGTAAAA
TATAAAATAATTATAATAATTATATAATAATGTATGATGATGATGATAAT
TTTAGTTTCAGTCTAGCCTTTCAAAACTTTTGGGCAGAACCCCTAGCTTC
TATAAGCAGACCCTTCCACCTCAATCTTTCATTACGCTGGCGTACACTCT
TTCTTTTGTTTCATGCACTATCACCACCTCTTCCAGGTTTGGCATGGTTT
ATGACCCTCAGGTAAAAAAAATGACTAAAGTTGCCGACCCCCCTGCCCAC
GTTTCATGCTTCAAGCAATGGGCTTGTTGGGAGGAAATCATCAGCAGGGC
ATTTGTGCTGCTGGAGAAGATCCTCTGTTTCTCTAGAGGCAGAGAGTGTT
GCATATATATATATATATATATATATAATATATATATATATATATATATA
TATATATATATATATAATATATATATATATATATATATATATAGTCAGTT
AAATTTCACCAAAACAACCCACGCCTTGCATCTTGGTATCATTCCTTCAC
ACATACCTATACTACTATCATAAACTAGCAAATCTGCATACTATAATAAC
AATACACACTTCTTCCTCAACAAGCTGCAGCCGCCATATATATATATATA
TCAGTATATATGCAACACTCTCTGCCTCTAGAGAAACAGAGGATCTTCTC
CAGCAGCACAAATGCCCTGCTGATGATTTCCTCCCAACAAGCCCACCAAT
CCTTGCGGGCCTTCCTCAGGCGCATCGCTGCTCGGCTCGCGGCAAAGTGG
CATAAGCCTCTCTCAACGGTCACCAACTGGGTGTGTGTCCGCTTGCAGTT
CGCGCTCATCAAAGCGGTGGATCTGCGGACCAGGGGCTCCAGGAAGAGGT
GGAGGAGCTTGGGGTTCGAGGATGGCGAGGGGATTGCCACTCTCTTCCAG
AGATAGTGAGTGGGGTGTGCTGTATTTGATGTTCTGTATATTGATTTGGG
TTTTGGGATTTCATGTGTAGGTTTTGGTATATTACCACAGGGACATCTGC
ATAGATGCAAGGCGTAGGTTGTTTTGTTTAAATTTAACTCTCTCTCTCTC
TATATATATACATTTGATGATGATGATGATTTTAATTTAGTTTAGGGTCT
AGGCTATCTCCTCTCACTAAGGGAGGGGTGAGCCCCCCTCTGCAGGAACG
ACCAGACCGCACCACCTCTTTGTCTATTTCCAAGTCCAATTCGCCATCTA
CTTCATCTGCCGTTATCTTCTACGTGTTGTTGTCACCGCTATGTGCTACC
ATCTCCGACATCAAGCCTCAGTGTCCTTCACCCACCCTCCATCCTCCACC
ACCTCACCTCGCCTCCGAGGCTCCATTCCAAAGCATCACCAAGAAGCCAC
TACATCGCTCCATTCCCGTCGCCCCTCTTACCCACAGCACCCATGCTCCA
TGCAGTGCCTCTTCCATCCTTCCAGGGCCCCCATGTTCTTCAGCTCCTCC
TGTCTACGTATAAGCACAAAGTGGAGAAAATAGTTCAGCTAGGCTATAAT
GCTACCTCTGCTCATGTCGTTTGCATTTTTCTTTCTTTCCCTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTCTAAGACTTCTGATGTGGCTGGGAGACAA
TATGACGTTGAAGCTGCTTTCTGAGTGGGATGAAACCTTCTATGCGCTGC
TGTTGAAGAGCTTCATGATCGAGGCTGTTCCATATCTCTGGGATTCTTGC
TCTGTAGCTCCTTTTGTATGTCACCAGTGAGAGCCTGTTCCTGTGTGGCG
GATTGCAGCAGTCTTCAGCTGATGAGGGTGCTCTTGACCCCCCGCCGCCT
GTTGTGCTGCGATTCTGTCAGAGGATCTTGTGGACTTGGTCGTAGGAGGA
GCAAATACTGGCTGCACTTCACTCAGCGCCCCCCGCCCTTGGCCATCGAA
AGCAGCTTGCAGGTGAGGCCAACTGCATGCGGGCCTGCCTCCTACTTTCC
AGCGAGGGGATGAAGAAGGCAGACGAGTCCTCGAGCATCAGGACAGCACT
GCTTTGAACCCTGTCAAGTTTTTCGAGATATGGTGGCATGAAGGGAGAGG
TATCAGTAGCTGTCGGTCGGCCGTAGCTCCTATCGAGTATCGCAAATCGA
AAAACTGACCGTAGGTTCCACTACCCAGTTTTTTATGTTGTTTTCAGGGA
AAGTGTCCATTTTGTGTGATTTTAATTTTTTCTACGGTTTTCGGACCACC
CCCCTTGTAGCCTAATACCCGACGTGGTCATAAGAATCCTTGGAAAAAAC
GGTTATAAGAATGTATCCTCCATTTTTTTGGCTGGAATACTCGATAGGCG
TGAAAACTCTTTTAAGATCCAGCCATCTGGGGGGTTGGTGGTGGTGGTGG
GTGGTACCGGTTTTGGATTTCCGTAACCCGCAATTTCAAAAGCACGACAA
CCCCCTATTTCTTCTTCCTCTCGCATTTAATTCATGCAAAAAAAAAAAAA
AAAAACATAAAACAGTAGAAGAAGTGGAAGAAGCCGTTGAGTAACACCAT
GATAAGGATCTTCTCAACGTGGCAGTGGGAGGAACCACCGACCACGACGA
ACCCTATAGAACCACCGACCACGACGAACCAAATGGCACGACTCGGATTT
TACCACCATGGAGCCATTTTTCAAAGTATATTGGGTTCAGTGAATATCTA
CGTAGTGATCACTACATGTATCTTCGGGTGCAGTGGTTCTCGTCCATTGC
TTGATGTGCCTCTCCTTGGGCCCCTCATCCATATTTTTGATCAAACCCGC
AAAATTCGGCGATTAGTGGATGGCATGACATCACTTTTAACGGACAAAGA
AGGATCGACGCAGGTAAATTTTGATCAATACATGCAAAACATGATCGAAA
CATGTAATCCAATTCATATTGGCTCTGGGAAGTCGCTTTGCTAGGTGTAG
TTCGCTCCTTTTTTGCAATCCATTGATTACTGATGACCTAAACAATGGCC
ATACCCTCTTGTGGGCACAGAAAATCGCTAACTCCGCCACCCAAACGCTC
AAGTACCTTCCTTTTTACATCCTAAGGTATGAATAAATTGCATTGTGCTT
TTCATTCAAGCTTCCTGGGCCAAGATAACGGGGGGTACCTCTACTGATCA
GTCTTCCTTCATAACACCATAGCCCTCGGCCGCCCCCCAGTAGATGAGGT
TGCCGTACTCAATCTTTGATCGTACAAAAGCCTTGTAGGCCATCATCTTG
GCACGATCATCCAGCATGTGGGCGGTCCTCCTAATGGCACCAAGCCTCTA
TACATATATATATATATATATAGCTTAAAGTATTTAATCAAAAAGTAATG
TATGTTGATGGTCCAGGCATGCTAGGAGAGATCAACATTTGAAATATAAT
TGACTTCAGGTGTATTTTTGATGAACAAGTTGATCAAGCTTCCATCTCCC
ACCATCCATGATCGATATCCTTTCTTTCACACAGTACTACGGAGCTTGTT
TGGGTCGGCTCCGACAACAAGGGGTGGAGGGCCTGGATCGAACTGATCAG
TTGGTGGCACTTCCAGCATCTGAGAGAGCAGTAGCTGCGACC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig814:178214..182055+

>mRNA_H-akashiwo_Contig814.3.1 ID=mRNA_H-akashiwo_Contig814.3.1|Name=mRNA_H-akashiwo_Contig814.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=285bp|location=Sequence derived from alignment at H-akashiwo_Contig814:178214..182055+ (Heterosigma akashiwo CCMP452)
ATGAAAAATGATGATTTGAGAAATTGCCGCTACAGCGAAAGAAAAAGGAG
GGGGCGGCCACGAAGTCGATGGGATAATCAACTAGAAATTATGGCAGTGA
CATCAGGTGTATCCAGAGCCCATTCTGCGTACCTTGATCATTACTGCAGA
AGGTTTGGCATGGTTTATGACCCTCAGTACTACGGAGCTTGTTTGGGTCG
GCTCCGACAACAAGGGGTGGAGGGCCTGGATCGAACTGATCAGTTGGTGG
CACTTCCAGCATCTGAGAGAGCAGTAGCTGCGACC
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