mRNA_H-akashiwo_Contig812.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig812.1.1
Unique NamemRNA_H-akashiwo_Contig812.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig812.1.1 vs. uniprot
Match: A0A7S2XUJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUJ6_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.130e-25
Identity = 46/91 (50.55%), Postives = 67/91 (73.63%), Query Frame = 3
Query:   12 MATMAFQGVLVSPEELRQELSSSPGSTVILDSSWHLGGARDGMTEFLEKRIKSAQFFDINAIADTSSDLPHMLPSEDLFASRVSEMGISND 284
            MA+M+F   L++P++L+  L ++P  T +LD+SWH+  +R+   EFL+ RI S+ FFDI+AIADTSS LPHMLP+ + FA+  +EMGI  D
Sbjct:   38 MASMSFTSTLITPQQLKTALDANPSKTRVLDASWHMNKSRNATAEFLDARIPSSVFFDIDAIADTSSSLPHMLPTPEFFANAAAEMGICKD 128          
BLAST of mRNA_H-akashiwo_Contig812.1.1 vs. uniprot
Match: A0A836CBP8_9STRA (Rhodanese-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.130e-21
Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 3
Query:   27 FQGVLVSPEELRQELSSSPGSTVILDSSWHLGGARDGMTEFLEKRIKSAQFFDINAIADTSSDLPHMLPSEDLFASRVSEMGISNDK 287
            F G LV+P EL+  L +   S  +LD+SWHLG    G  E+L+  I  A FFDI+A+ADTSS LPHMLPS  +F+ +VS MGI ND+
Sbjct:    4 FSGPLVTPSELQDALKTQRPSVKVLDASWHLGDRGRGKAEYLKGHIPGAMFFDIDAVADTSSSLPHMLPSAGVFSDKVSAMGIGNDQ 90          
BLAST of mRNA_H-akashiwo_Contig812.1.1 vs. uniprot
Match: A0A367KTM1_RHIST (Uncharacterized protein n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KTM1_RHIST)

HSP 1 Score: 89.4 bits (220), Expect = 2.190e-19
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 3
Query:   33 GVLVSPEELRQELSSSPGSTVILDSSWHLGGA-RDGMTEFLEKRIKSAQFFDINAIADTSSDLPHMLPSEDLFASRVSEMGISND 284
            G LVSP+EL+  L    GS  ILD SWH+    RD   EFL+KRI  +QFF I+ I DTSSDLPHMLPS ++FAS V  +GIS D
Sbjct:   19 GSLVSPKELKAAL----GSVKILDGSWHMPNTNRDPFAEFLQKRIIGSQFFGIDTIKDTSSDLPHMLPSPEVFASAVGNLGISED 99          
BLAST of mRNA_H-akashiwo_Contig812.1.1 vs. uniprot
Match: A0A8H7RDP2_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7RDP2_9FUNG)

HSP 1 Score: 89.0 bits (219), Expect = 3.270e-19
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 3
Query:   33 GVLVSPEELRQELSSSPGSTVILDSSWHLGGA-RDGMTEFLEKRIKSAQFFDINAIADTSSDLPHMLPSEDLFASRVSEMGISND 284
            G LVSP+EL+  L+S      +LD SWH+    RD   EFL+KRI S+QFF I+ I DTSSDLPHMLPS D FA  V +MGIS D
Sbjct:   24 GSLVSPKELKPALAS----VKVLDGSWHMPNTNRDPYQEFLQKRIASSQFFGIDTIKDTSSDLPHMLPSPDKFADAVGKMGISQD 104          
BLAST of mRNA_H-akashiwo_Contig812.1.1 vs. uniprot
Match: S2J745_MUCC1 (Uncharacterized protein n=4 Tax=Mucor TaxID=4830 RepID=S2J745_MUCC1)

HSP 1 Score: 85.1 bits (209), Expect = 9.150e-18
Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = 3
Query:   33 GVLVSPEELRQELSSSPGSTVILDSSWHLGGA-RDGMTEFLEKRIKSAQFFDINAIADTSSDLPHMLPSEDLFASRVSEMGISND 284
            G LVSP+EL+  LSS      +LD SWH+  A RD   E+L KRI  +QFF I+ I DTSSDLPHMLPS D FA  V ++GIS +
Sbjct:   24 GSLVSPKELKSALSS----VKVLDGSWHMPNANRDPYQEYLNKRIAGSQFFGIDTIKDTSSDLPHMLPSPDNFADAVGKLGISEN 104          
BLAST of mRNA_H-akashiwo_Contig812.1.1 vs. uniprot
Match: A0A0B7MYP3_9FUNG (Uncharacterized protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7MYP3_9FUNG)

HSP 1 Score: 84.3 bits (207), Expect = 1.530e-17
Identity = 48/85 (56.47%), Postives = 55/85 (64.71%), Query Frame = 3
Query:   33 GVLVSPEELRQELSSSPGSTVILDSSWHLGGA-RDGMTEFLEKRIKSAQFFDINAIADTSSDLPHMLPSEDLFASRVSEMGISND 284
            G LVS +EL+  L S      ILD SWH+    RD   EFL+KRI  +QFF I+ I DTSSDLPHMLPS D FA  V +MGIS D
Sbjct:   12 GSLVSSKELKSALPS----VKILDGSWHMPNTNRDPYQEFLDKRIAGSQFFGIDTIKDTSSDLPHMLPSPDKFADAVGKMGISQD 92          
BLAST of mRNA_H-akashiwo_Contig812.1.1 vs. uniprot
Match: UPI001FD0EED3 (sulfurtransferase n=1 Tax=Acuticoccus sp. I52.16.1 TaxID=2928472 RepID=UPI001FD0EED3)

HSP 1 Score: 83.6 bits (205), Expect = 2.520e-17
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 3
Query:   36 VLVSPEELRQELSSSPGSTVILDSSWHLGGA-RDGMTEFLEKRIKSAQFFDINAIADTSSDLPHMLPSEDLFASRVSEMGISND 284
            +L++PEEL   L    G  V+LD+SWH+    RDG  EF+  RI  A+ FDI+AIADTSS LPH LPS ++FA  V  +G+SND
Sbjct:    1 MLITPEELNARL----GEVVVLDASWHMPDTGRDGNAEFVAARIPGARRFDIDAIADTSSGLPHTLPSPEVFARMVGALGVSND 80          
BLAST of mRNA_H-akashiwo_Contig812.1.1 vs. uniprot
Match: A0A367KVV2_RHIST (Uncharacterized protein n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KVV2_RHIST)

HSP 1 Score: 82.8 bits (203), Expect = 5.670e-17
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:   63 QELSSSPGSTVILDSSWHLGGA-RDGMTEFLEKRIKSAQFFDINAIADTSSDLPHMLPSEDLFASRVSEMGISND 284
            ++L S+ G   ILDSSWH+  A RD   EFL+KRI  ++FFDI+ I DTSSDLPHMLPS ++FA  V +MGI  +
Sbjct:   15 KQLGSALGCVKILDSSWHMPNANRDPYQEFLQKRIVRSRFFDIDGIKDTSSDLPHMLPSPEVFAEAVGKMGIDEN 89          
BLAST of mRNA_H-akashiwo_Contig812.1.1 vs. uniprot
Match: A0A2H6BAX5_9HYPH (Rhodanese domain-containing protein n=3 Tax=Methylopila TaxID=61653 RepID=A0A2H6BAX5_9HYPH)

HSP 1 Score: 82.4 bits (202), Expect = 7.240e-17
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 3
Query:   39 LVSPEELRQELSSSPGSTVILDSSWHLGGA-RDGMTEFLEKRIKSAQFFDINAIADTSSDLPHMLPSEDLFASRVSEMGISN 281
            LVS E L + L     + + +D SW+L  A RDG +EFL+ RI  A FFDINA+ADTS+DLPHMLP+ D+FA+ V E+GI +
Sbjct:    6 LVSTEWLAERLGDP--TVIPVDGSWYLPAANRDGPSEFLDARIPGAVFFDINAVADTSTDLPHMLPAPDVFAAAVGELGIGD 85          
BLAST of mRNA_H-akashiwo_Contig812.1.1 vs. uniprot
Match: UPI00036416DF (3-mercaptopyruvate sulfurtransferase n=1 Tax=Methylopila sp. M107 TaxID=1101190 RepID=UPI00036416DF)

HSP 1 Score: 81.6 bits (200), Expect = 1.370e-16
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 3
Query:   39 LVSPEELRQELSSSPGSTVILDSSWHLGGA-RDGMTEFLEKRIKSAQFFDINAIADTSSDLPHMLPSEDLFASRVSEMGISN 281
            LVS E L + L     + + +D SWHL    RDG TEF E+ +  A FFDINAIADTS+ LPHMLPS +LFAS V ++GI +
Sbjct:    6 LVSTEWLAERLGDP--NVIAVDGSWHLPDVGRDGRTEFRERHVPGAVFFDINAIADTSTGLPHMLPSPELFASEVGKLGIGD 85          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig812.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XUJ6_9STRA4.130e-2550.55Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836CBP8_9STRA1.130e-2152.87Rhodanese-like domain-containing protein n=1 Tax=T... [more]
A0A367KTM1_RHIST2.190e-1957.65Uncharacterized protein n=1 Tax=Rhizopus stolonife... [more]
A0A8H7RDP2_9FUNG3.270e-1957.65Uncharacterized protein n=1 Tax=Mucor plumbeus Tax... [more]
S2J745_MUCC19.150e-1855.29Uncharacterized protein n=4 Tax=Mucor TaxID=4830 R... [more]
A0A0B7MYP3_9FUNG1.530e-1756.47Uncharacterized protein n=1 Tax=Parasitella parasi... [more]
UPI001FD0EED32.520e-1752.38sulfurtransferase n=1 Tax=Acuticoccus sp. I52.16.1... [more]
A0A367KVV2_RHIST5.670e-1756.00Uncharacterized protein n=1 Tax=Rhizopus stolonife... [more]
A0A2H6BAX5_9HYPH7.240e-1753.66Rhodanese domain-containing protein n=3 Tax=Methyl... [more]
UPI00036416DF1.370e-1653.663-mercaptopyruvate sulfurtransferase n=1 Tax=Methy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig812contigH-akashiwo_Contig812:74362..75027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G7N9
PFAMsADH_N,ADH_zinc_N,AMP-binding,Rhodanese,Tic110
Model size289
Max annot lvl2759|Eukaryota
KEGG rclassRC00214
KEGG koko:K01011
KEGG ReactionR01931,R03105,R03106
KEGG Pathwayko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.23e-20
EggNOG OGsCOG2897@1|root,KOG1529@2759|Eukaryota
EC2.8.1.1,2.8.1.2
Descriptionthiosulfate sulfurtransferase activity
Cds size276
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387995.0615013-CDS-H-akashiwo_Contig812:74361..744221681387995.0615013-CDS-H-akashiwo_Contig812:74361..74422Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig812 74362..74422 -
1681387995.0748906-CDS-H-akashiwo_Contig812:74589..747591681387995.0748906-CDS-H-akashiwo_Contig812:74589..74759Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig812 74590..74759 -
1681387995.0854187-CDS-H-akashiwo_Contig812:74971..750161681387995.0854187-CDS-H-akashiwo_Contig812:74971..75016Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig812 74972..75016 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387995.095657-UTR-H-akashiwo_Contig812:75016..750271681387995.095657-UTR-H-akashiwo_Contig812:75016..75027Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig812 75017..75027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig812.1.1prot_H-akashiwo_Contig812.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig812 74362..75016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig812.1.1

>prot_H-akashiwo_Contig812.1.1 ID=prot_H-akashiwo_Contig812.1.1|Name=mRNA_H-akashiwo_Contig812.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=92bp
MATMAFQGVLVSPEELRQELSSSPGSTVILDSSWHLGGARDGMTEFLEKR
IKSAQFFDINAIADTSSDLPHMLPSEDLFASRVSEMGISNDK
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mRNA from alignment at H-akashiwo_Contig812:74362..75027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig812.1.1 ID=mRNA_H-akashiwo_Contig812.1.1|Name=mRNA_H-akashiwo_Contig812.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=666bp|location=Sequence derived from alignment at H-akashiwo_Contig812:74362..75027- (Heterosigma akashiwo CCMP452)
CAACGGCCCGGATGGCCACCATGGCTTTTCAGGGTGTACTTGTATCACCT GAAGAGGTTGTTTGCTGCTGTAAATTATGATATCATCCAATTAATTATAC TTGGAACATCGTGCAATTTTTCCGTGACATCGTGCAATTTTTCCGTCAAA TTTATTTCTATTGGCTGATTGTATAGCATATTCAGCTAAAAACGGAGTGA AGAAGGTCACGACTGCCTGATCACTGTGCATAATTATGCATAATATACAA TATTTCTTACATGCACAGTTGAGGCAAGAGCTTTCCAGTTCTCCAGGATC AACAGTCATTCTTGATAGCTCATGGCATCTAGGTGGTGCTAGGGATGGAA TGACTGAGTTTCTTGAAAAAAGGATCAAGAGCGCGCAGTTCTTTGACATA AATGCTATTGCTGACACATCCAGTGACTTGCCTCACATGTATGTATGTAA TAATATTTAAGGTACAACAATCTTCATCATTTTGCTACCTGCTTACTACT GTATTGAACAGTTCCCAGTATTTCTACTATAATGCTATACCTCATACAAT AAAAGGGCTGTTTTCCTGCTTTTGGGGTGGATGAAATATACTTTTTTGCT TCAAGGCTTCCTAGTGAGGACCTATTTGCTTCAAGGGTTTCAGAGATGGG GATCAGTAATGATAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig812:74362..75027-

>mRNA_H-akashiwo_Contig812.1.1 ID=mRNA_H-akashiwo_Contig812.1.1|Name=mRNA_H-akashiwo_Contig812.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=276bp|location=Sequence derived from alignment at H-akashiwo_Contig812:74362..75027- (Heterosigma akashiwo CCMP452)
ATGGCCACCATGGCTTTTCAGGGTGTACTTGTATCACCTGAAGAGTTGAG
GCAAGAGCTTTCCAGTTCTCCAGGATCAACAGTCATTCTTGATAGCTCAT
GGCATCTAGGTGGTGCTAGGGATGGAATGACTGAGTTTCTTGAAAAAAGG
ATCAAGAGCGCGCAGTTCTTTGACATAAATGCTATTGCTGACACATCCAG
TGACTTGCCTCACATGCTTCCTAGTGAGGACCTATTTGCTTCAAGGGTTT
CAGAGATGGGGATCAGTAATGATAAA
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