mRNA_H-akashiwo_Contig121.22.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig121.22.1
Unique NamemRNA_H-akashiwo_Contig121.22.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig121.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig121contigH-akashiwo_Contig121:1536972..1537526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size314
Hectar predicted targeting categoryother localisation
Exons2
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387121.569184-CDS-H-akashiwo_Contig121:1536972..15370621681387121.569184-CDS-H-akashiwo_Contig121:1536972..1537062Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1536973..1537062 -
1681387121.57936-CDS-H-akashiwo_Contig121:1537304..15375261681387121.57936-CDS-H-akashiwo_Contig121:1537304..1537526Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig121 1537305..1537526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig121.22.1prot_H-akashiwo_Contig121.22.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig121 1536973..1537526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig121.22.1

>prot_H-akashiwo_Contig121.22.1 ID=prot_H-akashiwo_Contig121.22.1|Name=mRNA_H-akashiwo_Contig121.22.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=104bp
TPSPTGADRWCLYDYPIKDTSLGYKASYVDGNTQVSLTQSAAASQGQAVI
GKTFVEDIGLSASEFNVAASFSLLMEGSDCHDEAERFVFTWGTSTECVTS
NSGD
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mRNA from alignment at H-akashiwo_Contig121:1536972..1537526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig121.22.1 ID=mRNA_H-akashiwo_Contig121.22.1|Name=mRNA_H-akashiwo_Contig121.22.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=555bp|location=Sequence derived from alignment at H-akashiwo_Contig121:1536972..1537526- (Heterosigma akashiwo CCMP452)
ACGCCATCGCCCACCGGGGCGGACCGCTGGTGCCTGTACGACTACCCCAT
CAAGGACACCAGCCTGGGGTACAAGGCCTCCTACGTCGACGGCAACACGC
AGGTCAGCTTGACGCAGAGCGCCGCGGCCAGCCAGGGCCAGGCGGTGATC
GGCAAGACCTTTGTGGAGGACATTGGCCTCTCGGCGTCCGAGTTCAACGT
TGCGGCCAGCTTCAGCCTGCTGGTAAGAGTCCATCACGCGTGCAAAATGG
TGTGATGATAAGACCTTGCTCAAGGAATGATTTCAAGTTGTTGTGTTTCC
ATGTGACTCACTGGATGTGGGATCCATGTTGTCCATGTTGTATTTTCGTA
TATACTACACCAACGAGAGGATACTACTCTATAATTTTTTTTGACAACAA
CAACTTGACCAATGATGACGTGTTATTGATCGTTGCTGTTTTCAAATCCA
ACCAATATGGTCAGATGGAAGGCTCCGACTGCCACGATGAAGCTGAGCGA
TTTGTGTTCACTTGGGGAACTTCCACCGAGTGTGTGACCTCAAACTCTGG
CGACA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig121:1536972..1537526-

>mRNA_H-akashiwo_Contig121.22.1 ID=mRNA_H-akashiwo_Contig121.22.1|Name=mRNA_H-akashiwo_Contig121.22.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=312bp|location=Sequence derived from alignment at H-akashiwo_Contig121:1536972..1537526- (Heterosigma akashiwo CCMP452)
ACGCCATCGCCCACCGGGGCGGACCGCTGGTGCCTGTACGACTACCCCAT
CAAGGACACCAGCCTGGGGTACAAGGCCTCCTACGTCGACGGCAACACGC
AGGTCAGCTTGACGCAGAGCGCCGCGGCCAGCCAGGGCCAGGCGGTGATC
GGCAAGACCTTTGTGGAGGACATTGGCCTCTCGGCGTCCGAGTTCAACGT
TGCGGCCAGCTTCAGCCTGCTGATGGAAGGCTCCGACTGCCACGATGAAG
CTGAGCGATTTGTGTTCACTTGGGGAACTTCCACCGAGTGTGTGACCTCA
AACTCTGGCGAC
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