mRNA_H-akashiwo_Contig1203.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1203.12.1
Unique NamemRNA_H-akashiwo_Contig1203.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1203.12.1 vs. uniprot
Match: A0A7S4D6U0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6U0_HETAK)

HSP 1 Score: 287 bits (734), Expect = 3.780e-96
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 1
Query:    1 AEPVPWRPAAYYQRLKILQINAQHKKDAMAWLWQHVTQHDIDVVLIQEPYITGTNVVAGVPSGYKSAIGDRPRGANGQSRGTQLACLVYKAGLPLMQDGVVTTSHTVGAVMRTNPRLLLVCSYMAKDTEVTREAQRWTES 420
            AEPVPWRPAAYYQRLKILQIN QHKKDAMAWLWQHVTQHDIDVVLIQEPY+TGTNVVAGVPSGYKSAIGDRPRGANGQSRGTQLACLVYKAGLPLMQDGVVTTSHTVGAVMRTNPRLLLVCSYMAKDTEVTREAQRWTES
Sbjct:   28 AEPVPWRPAAYYQRLKILQINTQHKKDAMAWLWQHVTQHDIDVVLIQEPYVTGTNVVAGVPSGYKSAIGDRPRGANGQSRGTQLACLVYKAGLPLMQDGVVTTSHTVGAVMRTNPRLLLVCSYMAKDTEVTREAQRWTES 167          
BLAST of mRNA_H-akashiwo_Contig1203.12.1 vs. uniprot
Match: A0A7S4DDE4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDE4_HETAK)

HSP 1 Score: 206 bits (524), Expect = 8.670e-62
Identity = 97/213 (45.54%), Postives = 140/213 (65.73%), Query Frame = 1
Query:    4 EPVPWRPAAYYQRLKILQINAQHKKDAMAWLWQHVTQHDIDVVLIQEPYITGTNVVAGVPSGYKSAIGDRPRGANGQSRGTQLACLVYKAGLPLMQDGVVTTSHTVGAVMRTNPRLLLVCSYMAKDTEVTREAQRWTESDNW--KSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQGSSNIDLTLAGHSL 636
            E VP++PA ++  L ++Q N QHKK A+  LW ++ + D+DV L+QEPY+ G N + G+P+ Y  AI  +PR   G   G QLAC+VYK  LP+MQDG +T+  TV AV+++NP +LLV +Y+ + + +  E ++W  S NW    +R LV  D NA S +W S   D RG+E+E F++ QGL V NR S   TF+GA+G++NID+ LAG  L
Sbjct:   21 ESVPYKPAEWFGSLSVVQANIQHKKSALDALWMYMVKEDVDVALVQEPYVLGENHLPGMPAVYARAIAPKPRDDEGVVIGMQLACIVYKQALPMMQDGELTSRGTVAAVLKSNPPMLLVSAYLPRSSNIEHETRKWVSSGNWVRHKTRALVGCDANAHSPMWCSTTRDRRGREIEDFVIEQGLGVANRPSEFTTFDGARGATNIDVVLAGGEL 233          
BLAST of mRNA_H-akashiwo_Contig1203.12.1 vs. uniprot
Match: A0A7S3Y8U4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8U4_HETAK)

HSP 1 Score: 192 bits (487), Expect = 7.030e-59
Identity = 102/124 (82.26%), Postives = 103/124 (83.06%), Query Frame = 1
Query:  358 VCSYMAKDTEVTREAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQGSSNIDLTLAGHSLAN-----ASLAGEYWG*VRGRPQLCAFDLDL 714
            VCSYMAKDTEVT EAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQ SSNIDLTLAGHSLA        L GE    V     +C FDLDL
Sbjct:    1 VCSYMAKDTEVTWEAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQESSNIDLTLAGHSLAQHITGWRVLGGES---VADHNYVC-FDLDL 120          
BLAST of mRNA_H-akashiwo_Contig1203.12.1 vs. uniprot
Match: A0A7S4DEI5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEI5_HETAK)

HSP 1 Score: 195 bits (495), Expect = 1.300e-58
Identity = 103/124 (83.06%), Postives = 104/124 (83.87%), Query Frame = 1
Query:  358 VCSYMAKDTEVTREAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQGSSNIDLTLAGHSLANAS-----LAGEYWG*VRGRPQLCAFDLDL 714
            VCSYMAKDTEVT EAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQGSSNIDLTLAGHSLA        L GE    V     +C FDLDL
Sbjct:    1 VCSYMAKDTEVTWEAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQGSSNIDLTLAGHSLAQRITGWRVLGGES---VADHNYVC-FDLDL 120          
BLAST of mRNA_H-akashiwo_Contig1203.12.1 vs. uniprot
Match: A0A7S3Y8X9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8X9_HETAK)

HSP 1 Score: 177 bits (450), Expect = 4.880e-51
Identity = 94/117 (80.34%), Postives = 97/117 (82.91%), Query Frame = 1
Query:  379 DTEVTREAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQGSSNIDLTLAGHSLAN-----ASLAGEYWG*VRGRPQLCAFDLDL 714
            +TEVTREAQRWTESDNW+SSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQ SSNIDLTLAGHSLA        L GE    V     +C FDLDL
Sbjct:   74 ETEVTREAQRWTESDNWRSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQESSNIDLTLAGHSLAQHITGWRVLGGES---VADHNYVC-FDLDL 186          
BLAST of mRNA_H-akashiwo_Contig1203.12.1 vs. uniprot
Match: J9K5I1_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9K5I1_ACYPI)

HSP 1 Score: 79.7 bits (195), Expect = 2.100e-13
Identity = 56/204 (27.45%), Postives = 92/204 (45.10%), Query Frame = 1
Query:   19 RPAAYYQRLKILQINAQHKKDAMAWLWQHVTQHDIDVVLIQEPYITGTNVVAGVPSGYKSAIGDRPRGANGQSRGTQLACLVYKAGLPLMQDGVVTTSHTV--GAVMRTNPRLLLVCSYMAKDTEVTREAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQGSSNIDLTLA 624
            +P    + +KI+QIN          L  +   ++ID+ L+QEPY T    +  +       I    R    +  G   A +V+   L ++    +TT+HTV           +  V SY           +  +      S R+++ AD NA S  W   R + +G+ +E  I+GQ L V NR    ++F GA+G+SN+D+TL+
Sbjct:  600 KPVMNERTMKIVQINMARSMAVSVELRSYCILNNIDLALVQEPY-TRNGRLTDLEDNNTRVI----RSHTNEQHGVWAAIVVFNDNLDIICRKNLTTTHTVVLSVAHPGQTPIDFVSSYFQFRKNTADSVRELSSIIQVLSERIIIGADVNAFSPWWFDPRRNDKGRLVEQMIIGQNLIVENRDISGWSFHGARGNSNVDVTLS 798          
BLAST of mRNA_H-akashiwo_Contig1203.12.1 vs. uniprot
Match: J9LPJ1_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LPJ1_ACYPI)

HSP 1 Score: 75.9 bits (185), Expect = 4.690e-12
Identity = 61/208 (29.33%), Postives = 93/208 (44.71%), Query Frame = 1
Query:   34 YQRLKILQINAQHKKDAMAWLWQHVTQHDIDVVLIQEPYITGTNVVAGVPSGYKSAIGDRPRGANGQSRGTQLACLVYKAGLPLMQDGVVTTSHTV--GAVMRTNPRLLLVCSYMA--KDT-EVTREAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQGSSNIDLTLAGHSLAN 642
            Y+ LKI Q+N    +     L  H  ++ IDV L+QEPY      + G   G +       +    +  G   A +V  + L ++    +TT HTV  G        + LV SY    K T + T E  R   S      R ++  D NA S  W+    + +G  +E  I   GL ++N+    +TF+GA+G SN+D+T A   + N
Sbjct: 5626 YKELKIAQLNMARSRAVSDELLHHCIKNKIDVALVQEPY-----TLRGSLHGLEHKGTRTVKSKVNEHHGIWAAIVVLNSQLDIISKPQLTTEHTVVLGVAYPGQEPIDLVSSYFQFRKPTRDFTNEIIRIHTS---LQERSILGIDVNAFSTKWYDHITNEKGLIVENMIRELGLIIINKDGYDYTFQGARGRSNVDVTFASPGITN 5825          
BLAST of mRNA_H-akashiwo_Contig1203.12.1 vs. uniprot
Match: J9LQ69_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LQ69_ACYPI)

HSP 1 Score: 74.7 bits (182), Expect = 1.110e-11
Identity = 51/177 (28.81%), Postives = 79/177 (44.63%), Query Frame = 1
Query:  121 IDVVLIQEPYITGTNVVAGVPSGYKSAIGDRPRGANGQSRGTQLACLVYKAGLPLMQDGVVTTSHTV--GAVMRTNPRLLLVCSYMAKDTEVTREAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQGSSNIDLTLAGHSLANA 645
            ID+ ++QEPY     +     S  + A             G   A +V+ + L ++    +TT+HTV  G        L LV SY           Q         SSR ++  D NA SH W   R + +G+ +E+ I    L + NR    +TF+GA+G SN+D+TL+   + N+
Sbjct: 1085 IDLAIVQEPYTRYGRLSDLEDSSTRVAWSH-----TNDQHGVWAAIVVFNSSLDILLKPHLTTTHTVTMGVAFPGQSPLDLVSSYFQYRKPTDIFTQEIHTIHTLLSSRSILGMDVNAFSHKWFDHRRNDKGRIVESMITDLDLVIQNREGNEYTFQGARGRSNVDITLSSRCMVNS 1256          
BLAST of mRNA_H-akashiwo_Contig1203.12.1 vs. uniprot
Match: A0A142LX24_BACRY (Uncharacterized protein n=1 Tax=Bactrocera tryoni TaxID=59916 RepID=A0A142LX24_BACRY)

HSP 1 Score: 74.3 bits (181), Expect = 1.390e-11
Identity = 60/204 (29.41%), Postives = 97/204 (47.55%), Query Frame = 1
Query:   43 LKILQINAQHKKDAMAWLWQHVTQHDIDVVLIQEPYITGTNVVAGVPSGYKSAIGDRPRGANGQSRGTQLACLVYKAGLPLMQDGVVTTSHTVGAVMRTNPR-LLLVCSYMAKDTEVTREA---QRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRV-SPHFTFEGAQGSSNIDLTLAGHSLA 639
            +K LQIN QH K A A L   + Q   DVVLIQEP++TG N ++G+ +     +  +  G N        AC++ +  L +      + +  V A +  +     L+ +YM  D  V       +R     +   + V++ +D N++  +W S   + RG+ L  FI+ + L + NR  SP F   G +    +DLTLA   +A
Sbjct:    1 MKFLQINLQHAKAASANLLLRLEQDGADVVLIQEPWLTG-NGISGLRTKSHRLLAAKDAGRN-------RACMLVRNELTVFLLPNFSNADVVTAKLECDTGDFWLISAYMPHDDVVEPPPLLLRRTLAEASRNGAGVIIGSDANSRHSIWGSSDTNTRGESLFDFIVSENLRICNRGNSPTFVTAGRE--EVLDLTLASQGIA 194          
BLAST of mRNA_H-akashiwo_Contig1203.12.1 vs. uniprot
Match: UPI000C6DE9BD (uncharacterized protein LOC111636752 n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DE9BD)

HSP 1 Score: 71.2 bits (173), Expect = 5.890e-11
Identity = 58/212 (27.36%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   43 LKILQINAQHKKDAMAWLWQHVTQHDIDVVLIQEPYITGTNVVAGVPSGYKSAIGDRPRGANGQSRGTQLACLVYKAGLPLMQDGVVTT-----SHTVGAVMRTNPR---LLLVCSYMAKDTEVTREAQRWTES-DNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQGSSNIDLTLAGHSLANASL 651
            L ILQIN Q  K A     Q V    +D+++IQEPY+    +         + +G      N +   T  +    K G+    + ++T      S+     ++ + R   + ++  Y + D ++T      + + +  K ++V+V  D NAKSHLWHS +ED RG +L   I    L  +N  SP  TF    G S +D+ L   +L   ++
Sbjct:   13 LNILQINLQRSKAASTEALQMVQDLKVDILVIQEPYVYNKKI---------AMLG------NNKIHNTITSDNRIKTGIIAYNNSIMTQLIAQHSNNYFTTVKVDTRDDGIYIISFYCSPDEDLTHPLDLLSLTMEQLKGNKVIVMGDFNAKSHLWHSPKEDPRGYKLCELIAAFSLTSLND-SPLPTFSTVLGDSWVDVCLGNPNLLKQNI 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1203.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4D6U0_HETAK3.780e-9698.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DDE4_HETAK8.670e-6245.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8U4_HETAK7.030e-5982.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DEI5_HETAK1.300e-5883.06Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y8X9_HETAK4.880e-5180.34Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
J9K5I1_ACYPI2.100e-1327.45Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
J9LPJ1_ACYPI4.690e-1229.33Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
J9LQ69_ACYPI1.110e-1128.81Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
A0A142LX24_BACRY1.390e-1129.41Uncharacterized protein n=1 Tax=Bactrocera tryoni ... [more]
UPI000C6DE9BD5.890e-1127.36uncharacterized protein LOC111636752 n=1 Tax=Centr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1203contigH-akashiwo_Contig1203:208636..209349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7029.ACYPI38355-PA
PFAMsExo_endo_phos_2,RVT_1
Model size714
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.78e-16
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39XVS@33154|Opisthokonta,3BXBC@33208|Metazoa,3DBAC@33213|Bilateria,421D4@6656|Arthropoda,3SR4B@50557|Insecta,3ED43@33342|Paraneoptera
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size588
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387119.9362912-UTR-H-akashiwo_Contig1203:208635..2087191681387119.9362912-UTR-H-akashiwo_Contig1203:208635..208719Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1203 208636..208719 +
1681387119.9626603-UTR-H-akashiwo_Contig1203:209307..2093491681387119.9626603-UTR-H-akashiwo_Contig1203:209307..209349Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1203 209308..209349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387119.9544733-CDS-H-akashiwo_Contig1203:208719..2093071681387119.9544733-CDS-H-akashiwo_Contig1203:208719..209307Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1203 208720..209307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1203.12.1prot_H-akashiwo_Contig1203.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1203 208720..209307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1203.12.1

>prot_H-akashiwo_Contig1203.12.1 ID=prot_H-akashiwo_Contig1203.12.1|Name=mRNA_H-akashiwo_Contig1203.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=196bp
MAWLWQHVTQHDIDVVLIQEPYITGTNVVAGVPSGYKSAIGDRPRGANGQ
SRGTQLACLVYKAGLPLMQDGVVTTSHTVGAVMRTNPRLLLVCSYMAKDT
EVTREAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFIL
GQGLAVVNRVSPHFTFEGAQGSSNIDLTLAGHSLANASLAGEYWG*
back to top

mRNA from alignment at H-akashiwo_Contig1203:208636..209349+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1203.12.1 ID=mRNA_H-akashiwo_Contig1203.12.1|Name=mRNA_H-akashiwo_Contig1203.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=714bp|location=Sequence derived from alignment at H-akashiwo_Contig1203:208636..209349+ (Heterosigma akashiwo CCMP452)
GCGGAGCCGGTCCCGTGGCGGCCGGCTGCCTACTACCAGCGGCTGAAAAT CCTGCAGATCAACGCCCAACACAAAAAGGATGCTATGGCGTGGCTCTGGC AGCACGTCACCCAGCACGACATTGATGTGGTGCTCATCCAAGAACCATAC ATCACTGGGACAAACGTGGTTGCGGGCGTGCCTTCGGGGTACAAGAGTGC TATTGGCGACAGGCCGCGGGGGGCCAACGGCCAGTCACGGGGCACGCAGC TGGCTTGCCTAGTGTACAAGGCCGGCCTCCCGCTGATGCAGGACGGGGTT GTGACCACCAGTCACACGGTGGGCGCAGTGATGCGCACCAACCCCAGGTT GCTCCTCGTCTGCAGCTATATGGCAAAGGACACCGAGGTCACACGGGAGG CACAGCGCTGGACTGAGTCGGACAACTGGAAGTCTAGCAGAGTACTGGTG GCGGCCGACACCAACGCGAAGTCGCACCTCTGGCACAGCGGCAGGGAGGA CGGCCGCGGCCAGGAGCTCGAGGCCTTCATATTGGGCCAGGGGCTGGCAG TGGTGAATCGCGTGTCACCCCATTTCACCTTCGAGGGAGCCCAGGGCTCC TCAAACATCGACCTAACCCTGGCTGGCCACAGTCTGGCGAACGCATCACT GGCTGGCGAGTACTGGGGGTGAGTCCGTGGCCGACCACAACTATGTGCGT TCGACCTGGATCTG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1203:208636..209349+

>mRNA_H-akashiwo_Contig1203.12.1 ID=mRNA_H-akashiwo_Contig1203.12.1|Name=mRNA_H-akashiwo_Contig1203.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=588bp|location=Sequence derived from alignment at H-akashiwo_Contig1203:208636..209349+ (Heterosigma akashiwo CCMP452)
ATGGCGTGGCTCTGGCAGCACGTCACCCAGCACGACATTGATGTGGTGCT
CATCCAAGAACCATACATCACTGGGACAAACGTGGTTGCGGGCGTGCCTT
CGGGGTACAAGAGTGCTATTGGCGACAGGCCGCGGGGGGCCAACGGCCAG
TCACGGGGCACGCAGCTGGCTTGCCTAGTGTACAAGGCCGGCCTCCCGCT
GATGCAGGACGGGGTTGTGACCACCAGTCACACGGTGGGCGCAGTGATGC
GCACCAACCCCAGGTTGCTCCTCGTCTGCAGCTATATGGCAAAGGACACC
GAGGTCACACGGGAGGCACAGCGCTGGACTGAGTCGGACAACTGGAAGTC
TAGCAGAGTACTGGTGGCGGCCGACACCAACGCGAAGTCGCACCTCTGGC
ACAGCGGCAGGGAGGACGGCCGCGGCCAGGAGCTCGAGGCCTTCATATTG
GGCCAGGGGCTGGCAGTGGTGAATCGCGTGTCACCCCATTTCACCTTCGA
GGGAGCCCAGGGCTCCTCAAACATCGACCTAACCCTGGCTGGCCACAGTC
TGGCGAACGCATCACTGGCTGGCGAGTACTGGGGGTGA
back to top