mRNA_H-akashiwo_Contig120.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig120.9.1
Unique NamemRNA_H-akashiwo_Contig120.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig120.9.1 vs. uniprot
Match: A0A7S4DDW7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDW7_HETAK)

HSP 1 Score: 118 bits (295), Expect = 9.200e-33
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 GTDADTVVDCHPAAARSDGGREAEIAQAVEDVFFDEDELESDLAMLQTREEWKQAAKEYD 180
            GTDADTVVDCHPAAARSDGGREAEIAQAVEDVFFDEDELESDLAMLQTREEWKQAAKEYD
Sbjct:   44 GTDADTVVDCHPAAARSDGGREAEIAQAVEDVFFDEDELESDLAMLQTREEWKQAAKEYD 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig120.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DDW7_HETAK9.200e-33100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig120contigH-akashiwo_Contig120:704462..705085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size265
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387118.319366-UTR-H-akashiwo_Contig120:704461..7045411681387118.319366-UTR-H-akashiwo_Contig120:704461..704541Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig120 704462..704541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387118.331448-CDS-H-akashiwo_Contig120:704541..7046431681387118.331448-CDS-H-akashiwo_Contig120:704541..704643Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 704542..704643 -
1681387118.341612-CDS-H-akashiwo_Contig120:705004..7050851681387118.341612-CDS-H-akashiwo_Contig120:705004..705085Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig120 705005..705085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig120.9.1prot_H-akashiwo_Contig120.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig120 704542..705085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig120.9.1

>prot_H-akashiwo_Contig120.9.1 ID=prot_H-akashiwo_Contig120.9.1|Name=mRNA_H-akashiwo_Contig120.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=61bp
GTDADTVVDCHPAAARSDGGREAEIAQAVEDVFFDEDELESDLAMLQTRE
EWKQAAKEYD*
back to top

mRNA from alignment at H-akashiwo_Contig120:704462..705085-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig120.9.1 ID=mRNA_H-akashiwo_Contig120.9.1|Name=mRNA_H-akashiwo_Contig120.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=624bp|location=Sequence derived from alignment at H-akashiwo_Contig120:704462..705085- (Heterosigma akashiwo CCMP452)
GGCACCGACGCGGACACGGTGGTGGACTGCCACCCGGCGGCCGCGCGGTC
CGACGGGGGGCGCGAGGCGGAAATCGCGCAGGCAAGTCCCCCCCCACACA
CACACCTGCACATTTTCCCCTCCGTGCCCTTTGCTTTCCCCGTGCCGCCT
TTGCCTCTCGCGCAGGCGCCGCCGTTGCTCTGCGGGGAGGGTCGCTGCTG
CTGTCTATCCGTGGCAACTTCGTCGCTGACGGTGATCTTTGCAAGGGAGC
TAAGGAATTTGCTGAGAAAAGAAATTGGGGCACAGCTGAGTGTTTTTTTT
CATTATAGTGCATACTACCATTATCTCTACTTTTACTTCCCAAACACAAA
GTATACGCAATTGTTTTGGTGCCTTCAGAAACCTCTTCAAATTTGCTGTG
CACATTTTTTTTTGTGTATGAATCTCTTAAATCAAACCTCAGGCTGTCGA
GGATGTGTTTTTTGATGAAGATGAACTTGAGTCTGACCTTGCAATGCTGC
AAACGCGTGAAGAATGGAAGCAAGCAGCTAAAGAGTATGATTGATATTAT
GTGATGAGACCCCCTTTTTTTTGTCCTGGTGTTGAGGGTTTGGCATCAGA
AGGGAACAATTGGAGGTGTTGCGG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig120:704462..705085-

>mRNA_H-akashiwo_Contig120.9.1 ID=mRNA_H-akashiwo_Contig120.9.1|Name=mRNA_H-akashiwo_Contig120.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=183bp|location=Sequence derived from alignment at H-akashiwo_Contig120:704462..705085- (Heterosigma akashiwo CCMP452)
GGCACCGACGCGGACACGGTGGTGGACTGCCACCCGGCGGCCGCGCGGTC
CGACGGGGGGCGCGAGGCGGAAATCGCGCAGGCTGTCGAGGATGTGTTTT
TTGATGAAGATGAACTTGAGTCTGACCTTGCAATGCTGCAAACGCGTGAA
GAATGGAAGCAAGCAGCTAAAGAGTATGATTGA
back to top