mRNA_H-akashiwo_Contig1195.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1195.6.1
Unique NamemRNA_H-akashiwo_Contig1195.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1195.6.1 vs. uniprot
Match: A0A0K6FWB4_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6FWB4_9AGAM)

HSP 1 Score: 115 bits (287), Expect = 1.750e-31
Identity = 53/78 (67.95%), Postives = 67/78 (85.90%), Query Frame = 1
Query:   10 KLYVGNLSWNTDDESLRTAFSEYGNITDLIVMTERDTGRSRGFGYVTFETSEAMNAAMAAMDGQEVDGRNLRVNAANS 243
            KLYVGNLSW+T DE+LR AF EYGN+ D IVM +R+TGRSRGFG+VT+E+++  NAA+ A++G EVDGRNLRVN AN+
Sbjct:    3 KLYVGNLSWSTTDETLRHAFGEYGNVVDSIVMKDRETGRSRGFGFVTYESTDEANAAINALNGAEVDGRNLRVNLANA 80          
BLAST of mRNA_H-akashiwo_Contig1195.6.1 vs. uniprot
Match: A0A5B6YS47_DAVIN (RRM domain-containing protein n=3 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YS47_DAVIN)

HSP 1 Score: 116 bits (290), Expect = 2.480e-31
Identity = 53/77 (68.83%), Postives = 67/77 (87.01%), Query Frame = 1
Query:   10 KLYVGNLSWNTDDESLRTAFSEYGNITDLIVMTERDTGRSRGFGYVTFETSEAMNAAMAAMDGQEVDGRNLRVNAAN 240
            KL+VG LSW TDD+SLR AFS +G++TD+ V+T+RDTGRSRGFG+V F T EA NAAM+AMDGQ++DGRN+RV+ AN
Sbjct:   40 KLFVGGLSWGTDDQSLRDAFSGFGDVTDVRVITDRDTGRSRGFGFVNFSTDEAANAAMSAMDGQQLDGRNIRVSIAN 116          
BLAST of mRNA_H-akashiwo_Contig1195.6.1 vs. uniprot
Match: A0A5M3MTU9_CONPW (RNA-binding domain-containing protein n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3MTU9_CONPW)

HSP 1 Score: 111 bits (278), Expect = 1.550e-29
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    4 GNKLYVGNLSWNTDDESLRTAFSEYGNITDLIVMTERDTGRSRGFGYVTFETSEAMNAAMAAMDGQEVDGRNLRVNAANS 243
            G+KLYVGNLSW+T D+ LR AF  YG +TD IVM +R+TGRSRGFG+VTF T+E  NAAM  MD  E+DGR +RVN AN+
Sbjct:    2 GSKLYVGNLSWSTGDDGLRNAFGRYGAVTDSIVMRDRETGRSRGFGFVTFTTAEEANAAMGQMDQTELDGRTIRVNVANA 81          
BLAST of mRNA_H-akashiwo_Contig1195.6.1 vs. uniprot
Match: A0A8H5LV91_9AGAR (RRM domain-containing protein n=1 Tax=Tetrapyrgos nigripes TaxID=182062 RepID=A0A8H5LV91_9AGAR)

HSP 1 Score: 111 bits (277), Expect = 3.760e-29
Identity = 49/78 (62.82%), Postives = 67/78 (85.90%), Query Frame = 1
Query:   10 KLYVGNLSWNTDDESLRTAFSEYGNITDLIVMTERDTGRSRGFGYVTFETSEAMNAAMAAMDGQEVDGRNLRVNAANS 243
            K+YVGNLSWNT D++LR AFS+YGN+ D IVM +RDTGRSRGFG+VT+ T+E  +AA+++M+ QE+DGR ++VN AN+
Sbjct:    4 KIYVGNLSWNTTDDTLRQAFSQYGNVVDSIVMRDRDTGRSRGFGFVTYSTAEEASAAISSMNEQELDGRRIKVNLANA 81          
BLAST of mRNA_H-akashiwo_Contig1195.6.1 vs. uniprot
Match: A0A0N1J266_FUSLA (Rna--containing protein n=3 Tax=Fusarium TaxID=5506 RepID=A0A0N1J266_FUSLA)

HSP 1 Score: 110 bits (274), Expect = 4.590e-29
Identity = 49/78 (62.82%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 KLYVGNLSWNTDDESLRTAFSEYGNITDLIVMTERDTGRSRGFGYVTFETSEAMNAAMAAMDGQEVDGRNLRVNAANS 243
            KLYVGNLSWNT D++LRT FSE+G +TD I+M +R+TGR+RGFG+VTF + E  NAA+ A++ QE+DGR +RVN AN+
Sbjct:    3 KLYVGNLSWNTTDDTLRTTFSEFGEVTDSIIMRDRETGRARGFGFVTFASEEQANAAVDALNEQELDGRRIRVNVANA 80          
BLAST of mRNA_H-akashiwo_Contig1195.6.1 vs. uniprot
Match: A0A1B7N516_9AGAM (RNA-binding domain-containing protein n=1 Tax=Rhizopogon vinicolor AM-OR11-026 TaxID=1314800 RepID=A0A1B7N516_9AGAM)

HSP 1 Score: 110 bits (275), Expect = 4.690e-29
Identity = 51/78 (65.38%), Postives = 66/78 (84.62%), Query Frame = 1
Query:   10 KLYVGNLSWNTDDESLRTAFSEYGNITDLIVMTERDTGRSRGFGYVTFETSEAMNAAMAAMDGQEVDGRNLRVNAANS 243
            K+YVGNLSWNT D++LR AFSE+G +TD IVM++R+TGRSRGFG+VTF +SE  +AA+  M+ QE+DGR LRVN AN+
Sbjct:    4 KVYVGNLSWNTTDDTLRAAFSEFGEVTDAIVMSDRETGRSRGFGFVTFVSSEIADAAVNGMNEQELDGRRLRVNLANA 81          
BLAST of mRNA_H-akashiwo_Contig1195.6.1 vs. uniprot
Match: A0A4Q4Q6I7_9PLEO (RRM domain-containing protein n=1 Tax=Alternaria arborescens TaxID=156630 RepID=A0A4Q4Q6I7_9PLEO)

HSP 1 Score: 108 bits (270), Expect = 6.580e-29
Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   10 KLYVGNLSWNTDDESLRTAFSEYGNITDLIVMTERDTGRSRGFGYVTFETSEAMNAAMAAMDGQEVDGRNLRVNAAN 240
            K+YVGNL W+T D+SLR AF+EYGN+ D IVM +RDTGRSRGFG+VTFE+S  +  A+ +M+ QE+DGR +RVN AN
Sbjct:    4 KIYVGNLGWSTTDDSLRYAFAEYGNVVDAIVMRDRDTGRSRGFGFVTFESSTEVETAVLSMNDQELDGRRIRVNRAN 80          
BLAST of mRNA_H-akashiwo_Contig1195.6.1 vs. uniprot
Match: A0A2H3G0A4_FUSOX (RRM domain-containing protein n=7 Tax=Fusarium oxysporum TaxID=5507 RepID=A0A2H3G0A4_FUSOX)

HSP 1 Score: 109 bits (272), Expect = 6.920e-29
Identity = 49/78 (62.82%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   10 KLYVGNLSWNTDDESLRTAFSEYGNITDLIVMTERDTGRSRGFGYVTFETSEAMNAAMAAMDGQEVDGRNLRVNAANS 243
            K+YVGNLSWNTDDESLR+ FS YGN+ D IVM +RDTGRSRGFG+VT+  S    +A+ AM+ QE+DG++++VN AN+
Sbjct:    4 KVYVGNLSWNTDDESLRSHFSNYGNVLDSIVMRDRDTGRSRGFGFVTYSNSNEAESAIGAMNEQEIDGKHVKVNLANA 81          
BLAST of mRNA_H-akashiwo_Contig1195.6.1 vs. uniprot
Match: K3VTG2_FUSPC (RRM domain-containing protein n=10 Tax=Fusarium TaxID=5506 RepID=K3VTG2_FUSPC)

HSP 1 Score: 109 bits (273), Expect = 7.090e-29
Identity = 49/78 (62.82%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   10 KLYVGNLSWNTDDESLRTAFSEYGNITDLIVMTERDTGRSRGFGYVTFETSEAMNAAMAAMDGQEVDGRNLRVNAANS 243
            KLYVGNLSWNT D++LR  FSE+G +TD I+M +R+TGR+RGFG+VTF T E  NAA+ A++ QE+DGR +RVN AN+
Sbjct:    3 KLYVGNLSWNTTDDTLRQTFSEFGEVTDSIIMRDRETGRARGFGFVTFSTEEQANAAVDALNEQELDGRRIRVNVANA 80          
BLAST of mRNA_H-akashiwo_Contig1195.6.1 vs. uniprot
Match: UPI001B86CFB7 (uncharacterized protein n=6 Tax=Suillus TaxID=5379 RepID=UPI001B86CFB7)

HSP 1 Score: 109 bits (272), Expect = 1.260e-28
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   10 KLYVGNLSWNTDDESLRTAFSEYGNITDLIVMTERDTGRSRGFGYVTFETSEAMNAAMAAMDGQEVDGRNLRVNAANS 243
            K+YVGNLSWNT D+SLR+AF ++GN+TD IVM +R+TGRSRGFG+VTF  +E   AA+  M+ QE+DGR LRVN AN+
Sbjct:    4 KVYVGNLSWNTTDDSLRSAFGDFGNVTDAIVMKDRETGRSRGFGFVTFNGTEEAEAAIQGMNEQELDGRRLRVNLANA 81          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1195.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0K6FWB4_9AGAM1.750e-3167.95Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A5B6YS47_DAVIN2.480e-3168.83RRM domain-containing protein n=3 Tax=Davidia invo... [more]
A0A5M3MTU9_CONPW1.550e-2965.00RNA-binding domain-containing protein n=1 Tax=Coni... [more]
A0A8H5LV91_9AGAR3.760e-2962.82RRM domain-containing protein n=1 Tax=Tetrapyrgos ... [more]
A0A0N1J266_FUSLA4.590e-2962.82Rna--containing protein n=3 Tax=Fusarium TaxID=550... [more]
A0A1B7N516_9AGAM4.690e-2965.38RNA-binding domain-containing protein n=1 Tax=Rhiz... [more]
A0A4Q4Q6I7_9PLEO6.580e-2963.64RRM domain-containing protein n=1 Tax=Alternaria a... [more]
A0A2H3G0A4_FUSOX6.920e-2962.82RRM domain-containing protein n=7 Tax=Fusarium oxy... [more]
K3VTG2_FUSPC7.090e-2962.82RRM domain-containing protein n=10 Tax=Fusarium Ta... [more]
UPI001B86CFB71.260e-2864.10uncharacterized protein n=6 Tax=Suillus TaxID=5379... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1195contigH-akashiwo_Contig1195:267915..268214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog80637.XP_007766487.1
PFAMsRRM_1
Model size300
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.55e-30
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota,3A0CS@33154|Opisthokonta,3P3AV@4751|Fungi,3V0WZ@5204|Basidiomycota,229J7@155619|Agaricomycetes
DescriptionRNA-binding domain-containing protein
Cds size300
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387113.653134-CDS-H-akashiwo_Contig1195:267914..2682141681387113.653134-CDS-H-akashiwo_Contig1195:267914..268214Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1195 267915..268214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1195.6.1prot_H-akashiwo_Contig1195.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1195 267915..268214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1195.6.1

>prot_H-akashiwo_Contig1195.6.1 ID=prot_H-akashiwo_Contig1195.6.1|Name=mRNA_H-akashiwo_Contig1195.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=100bp
AGNKLYVGNLSWNTDDESLRTAFSEYGNITDLIVMTERDTGRSRGFGYVT
FETSEAMNAAMAAMDGQEVDGRNLRVNAANSGGGRGGGGGGYNSRASGW*
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mRNA from alignment at H-akashiwo_Contig1195:267915..268214-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1195.6.1 ID=mRNA_H-akashiwo_Contig1195.6.1|Name=mRNA_H-akashiwo_Contig1195.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=300bp|location=Sequence derived from alignment at H-akashiwo_Contig1195:267915..268214- (Heterosigma akashiwo CCMP452)
GCCGGCAACAAGCTCTACGTGGGAAACCTCTCTTGGAACACTGATGACGA AAGTCTTAGAACTGCTTTTTCTGAGTATGGCAACATCACCGACCTCATCG TGATGACCGAGCGTGATACTGGCAGATCTCGTGGATTTGGATACGTGACC TTCGAGACGAGCGAAGCTATGAATGCTGCTATGGCTGCAATGGACGGCCA AGAGGTGGACGGTAGAAATCTACGCGTCAACGCTGCCAACAGCGGCGGCG GCCGTGGCGGTGGCGGTGGTGGCTACAATTCAAGAGCATCTGGATGGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1195:267915..268214-

>mRNA_H-akashiwo_Contig1195.6.1 ID=mRNA_H-akashiwo_Contig1195.6.1|Name=mRNA_H-akashiwo_Contig1195.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=300bp|location=Sequence derived from alignment at H-akashiwo_Contig1195:267915..268214- (Heterosigma akashiwo CCMP452)
GCCGGCAACAAGCTCTACGTGGGAAACCTCTCTTGGAACACTGATGACGA
AAGTCTTAGAACTGCTTTTTCTGAGTATGGCAACATCACCGACCTCATCG
TGATGACCGAGCGTGATACTGGCAGATCTCGTGGATTTGGATACGTGACC
TTCGAGACGAGCGAAGCTATGAATGCTGCTATGGCTGCAATGGACGGCCA
AGAGGTGGACGGTAGAAATCTACGCGTCAACGCTGCCAACAGCGGCGGCG
GCCGTGGCGGTGGCGGTGGTGGCTACAATTCAAGAGCATCTGGATGGTAA
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