mRNA_H-akashiwo_Contig119.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig119.6.1
Unique NamemRNA_H-akashiwo_Contig119.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig119.6.1 vs. uniprot
Match: A0A7S2UXH4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXH4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 7.870e-25
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 RGKCWKQSCKACPHGQTEKETISLTVDIHPGMRDGDEIRFENVADEAIGHTAGDLVMVVQASQHEFFERQ 210
            RGKCW++ CKACP+GQTE E ISLTVD+ PG+ +GD IRFE VA E IGH  GDLV++V   +HE+FER+
Sbjct:  222 RGKCWRRGCKACPNGQTETEQISLTVDLAPGLAEGDNIRFEGVASEQIGHIPGDLVLLVAPIRHEYFERR 291
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BLAST of mRNA_H-akashiwo_Contig119.6.1 vs. uniprot
Match: A0A4D9DAZ8_9STRA (J domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAZ8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 8.940e-23
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 RGKCWKQSCKACPHGQTEKETISLTVDIHPGMRDGDEIRFENVADEAIGHTAGDLVMVVQASQHEFFER 207
            RGK W++ C ACP+GQT+ E + LTVDI PGM+DG+ I F +VADE +GH+AGDLV+ VQA  HEF+ R
Sbjct:  201 RGKAWRKGCSACPNGQTQPEEVKLTVDIQPGMKDGEMITFSDVADEKVGHSAGDLVVHVQAIPHEFYTR 269
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BLAST of mRNA_H-akashiwo_Contig119.6.1 vs. uniprot
Match: A0A482T1Z3_9ARCH (J domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T1Z3_9ARCH)

HSP 1 Score: 95.5 bits (236), Expect = 3.580e-22
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 RGKCWKQSCKACPHGQTEKETISLTVDIHPGMRDGDEIRFENVADEAIGHTAGDLVMVVQASQHEFFERQ 210
            RGK WK  CKACP G TE+E I LT+DI PGM+DGD+I+F+ VADEA+GH  GDLV ++Q +    F R+
Sbjct:  128 RGKAWKSPCKACPKGMTEEEEIQLTLDILPGMKDGDQIKFDQVADEAVGHIPGDLVFIIQQAPDTDFRRE 197
[Close]
BLAST of mRNA_H-akashiwo_Contig119.6.1 vs. uniprot
Match: A0A7S1G004_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G004_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.270e-17
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 RGKCWKQSCKACPHGQTEKETISLTVDIHPGMRDGDEIRFENVADEAIGHTAGDLVMVVQASQHEFFER 207
            RGK WK++CKACP GQTE +TI LT+D++ GMR+ + I FE V DE +G +AGDLV V+       F R
Sbjct:  225 RGKKWKRNCKACPKGQTESDTIKLTIDVNKGMRNQEPIVFEGVTDEKVGMSAGDLVFVINEQPVSDFTR 293
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BLAST of mRNA_H-akashiwo_Contig119.6.1 vs. uniprot
Match: A0A7S1G0K1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G0K1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.510e-16
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 RGKCWKQSCKACPHGQTEKETISLTVDIHPGMRDGDEIRFENVADEAIGHTAGDLVMVVQASQHEFFER 207
            RGK WK++CKACP GQTE +TI LT+D++ GMR+ + I FE V DE +G +AGDLV V+       F R
Sbjct:  225 RGKKWKRNCKACPKGQTESDTIKLTIDVNKGMRNQEPIVFEGVTDEKVGMSAGDLVFVINEQPVSDFTR 293
[Close]
BLAST of mRNA_H-akashiwo_Contig119.6.1 vs. uniprot
Match: A0A7S2WHG1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WHG1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.510e-16
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    1 RGKCWKQSCKACPHGQTEKETISLTVDIHPGMRDGDEIRFENVADEAIGHTAGDLVMVVQASQHEFFER 207
            RGK WK +C+ACP G+T  E I L++D++ GMR+G+ I FE VADE  G  AGDL  V+Q   H+ + R
Sbjct:  213 RGKMWKPNCRACPSGKTSTENIDLSLDVNKGMRNGERITFEGVADEKPGFLAGDLHFVIQEIPHKSYHR 281
[Close]
BLAST of mRNA_H-akashiwo_Contig119.6.1 vs. uniprot
Match: A0A7R9W0X6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W0X6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.010e-15
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 RGKCWKQSCKACPHGQTEKETISLTVDIHPGMRDGDEIRFENVADEAIGHTAGDLVMVVQASQHEFFER 207
            RGK W+ +C+ CP+GQTE E I LT+D+  GMR G+ I FE VADE  G TAGDL  ++     E + R
Sbjct:  314 RGKMWRSNCRECPNGQTETEKIDLTIDVQKGMRPGERITFEGVADEKPGLTAGDLEFIIAEIPDENYHR 382
[Close]
BLAST of mRNA_H-akashiwo_Contig119.6.1 vs. uniprot
Match: B6KB69_TOXGV (DnaJ protein, putative n=16 Tax=Sarcocystidae TaxID=5809 RepID=B6KB69_TOXGV)

HSP 1 Score: 77.0 bits (188), Expect = 7.090e-15
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 RGKCWKQSCKACPHGQTEKETISLTVDIHPGMRDGDEIRFENVADEAIGHTAGDLVMVVQASQHEFFER 207
            +GK W+  CK CP+G TE E   L+  +  GMRDGDEI F+ V ++ +GH  GDLV+V+Q   H+ + R
Sbjct:  227 QGKAWRPRCKECPNGITEPEVTQLSATVEAGMRDGDEIVFDGVGEQKLGHEPGDLVLVIQELPHKRYSR 295
[Close]
BLAST of mRNA_H-akashiwo_Contig119.6.1 vs. uniprot
Match: A0A1E7F2F4_9STRA (DnaJ-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2F4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.210e-14
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 RGKCWKQSCKACPHGQTEKETISLTVDIHPGMRDGDEIRFENVADEAIGHTAGDLVMVVQASQHEFFERQ 210
            RGK W  +C  C +GQTE E I LT+D   G+RDG+ I FE+VADE  G+ AGDL  V+   QH  + R+
Sbjct:  201 RGKMWLSNCSECKNGQTESEKIELTIDAFKGIRDGEAITFEDVADEKPGYKAGDLNFVMVEKQHPEYHRE 270
[Close]
BLAST of mRNA_H-akashiwo_Contig119.6.1 vs. uniprot
Match: A0A7S0GKJ3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKJ3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.080e-13
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 RGKCWKQSCKACPHGQTEKETISLTVDIHPGMRDGDEIRFENVADEAIGHTAGDLVMVV 177
            RGK WK +C+ CP G+T+ E ISL+V++ PGMR G+ + FE+VADE  G  AGDL  V+
Sbjct:  195 RGKMWKPNCRDCPKGKTQPEKISLSVEVTPGMRAGERVSFESVADEKPGMEAGDLHFVI 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig119.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A7S2UXH4_9STRA7.870e-2564.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9DAZ8_9STRA8.940e-2360.87J domain-containing protein n=2 Tax=Monodopsidacea... [more]
A0A482T1Z3_9ARCH3.580e-2258.57J domain-containing protein n=1 Tax=archaeon TaxID... [more]
A0A7S1G004_9STRA8.270e-1753.62Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1G0K1_9STRA1.510e-1653.62Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2WHG1_9STRA9.510e-1650.72Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7R9W0X6_9STRA2.010e-1550.72Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
B6KB69_TOXGV7.090e-1546.38DnaJ protein, putative n=16 Tax=Sarcocystidae TaxI... [more]
A0A1E7F2F4_9STRA1.210e-1450.00DnaJ-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S0GKJ3_9STRA2.080e-1354.24Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig119contigH-akashiwo_Contig119:342496..343919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5855.PVX_114560
PFAMsDnaJ,DnaJ_C
Model size220
Max annot lvl422676|Aconoidasida
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.17e-16
EggNOG OGsCOG0484@1|root,KOG0713@2759|Eukaryota,3Y9SC@5794|Apicomplexa,3KAHY@422676|Aconoidasida,3YYB2@5819|Haemosporida
Ec32 ortholog descriptionEsV-1-173 heat shock protein 40
Ec32 orthologEc-06_005190.1
DescriptionDnaJ C terminal domain
Cds size219
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387111.154096-CDS-H-akashiwo_Contig119:342495..3426211681387111.154096-CDS-H-akashiwo_Contig119:342495..342621Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig119 342496..342621 +
1681387111.167597-CDS-H-akashiwo_Contig119:343826..3439191681387111.167597-CDS-H-akashiwo_Contig119:343826..343919Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig119 343827..343919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig119.6.1prot_H-akashiwo_Contig119.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig119 342496..343919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig119.6.1

>prot_H-akashiwo_Contig119.6.1 ID=prot_H-akashiwo_Contig119.6.1|Name=mRNA_H-akashiwo_Contig119.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=73bp
RGKCWKQSCKACPHGQTEKETISLTVDIHPGMRDGDEIRFENVADEAIGH
TAGDLVMVVQASQHEFFERQVTT
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mRNA from alignment at H-akashiwo_Contig119:342496..343919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig119.6.1 ID=mRNA_H-akashiwo_Contig119.6.1|Name=mRNA_H-akashiwo_Contig119.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1424bp|location=Sequence derived from alignment at H-akashiwo_Contig119:342496..343919+ (Heterosigma akashiwo CCMP452)
CGGGGCAAGTGCTGGAAGCAGAGCTGCAAGGCCTGCCCGCACGGCCAGAC
CGAGAAGGAGACGATCAGCCTCACCGTGGACATCCACCCGGGCATGCGCG
ACGGCGACGAGATCCGATTCGAAAACGTGAGCGCTCCCCCTCCTGCGCCG
TCTTCCTTAGAAACAGGCTTTGGTAAAGTTGGTACGTAACAACATACTTG
CCTCAGTAATCCTCCACGTGTGCAGAGATACTTTGACGCACTTTTGCTGA
TTGTGAGCAGGTAGGAAGGATGGAGGGTCAGCTGAGAGCAACCACGTTTG
AGGCTGAATATATGACAATGCACGAGAAGATTTCTCCGGAAGGAGGCACC
TAGCCCAATAGCCTCCCACCTTTTAAGCAAGCACCTTAAGAAGGGTAAAT
GAAAAGGCCACATAGACCACATGCATGCTCCAGTTCACTCACCAAGAAGG
AAAAATTGCACTGCTGAGTTTATAGTTTATGTTTGCAATCATATATTTCT
GTGGCAGCATTGGCACTTCTGCTCTATACTTATCACCTGTGCTCACAATG
ATGTATCTGGCAGAACCTCCTGGTGCCCACATGTTGGCTATTTTTTTTTG
TCTACGTGTAAGCACAAAGTGGAGAAAATGGTTCAGCTAGGCTATAATGC
TACCTCTGCTCATATCATTTGCATTTTTCTTTCTTTCCTTTTTTGTTTCT
TTTTTTCTTTTTCTTCTTTTTCTAAGACTTCTGATGTGCCTGGGAGACAA
TATGGCGTTGAAGCTGCTTTCTGAGTGGGATGGAACCCTCTATGCGCTGC
TGTTGAAGAGTTTCATAGTCGAGGCTATATTCCTCTCTGGGATTCTTGCT
CTGTAGCTCCTTCTGTATGTCATCAGTGAGCGCCTGTTCCCTGTGTGGCG
GATTGCAGCAGCCTTCGTTGTACCTTGACACTGTGCTAGGTCACATCATG
ATAGTATTGTTGCGTATAGTTTGATATGCATGTATAAAACATGTCATAAC
ATAATTATATGGTGATTTTAGATTTCAAGTTTCAAATCAAGGCTCTTTTC
AAAACGCTCACACTTTCGAGACCAACCAGCAAACCAGCCACCCAAATAAC
GAACAGTAGCATATATAAGCAACCGCACCAAACAAAAAGCACATGGACCA
GCAGCCAACAAACCCAGGCCACGGCAGACGCAGAGATGCGTGCTATTGAA
GGCCCCCCCTCCCCTCTCCCCCCTGCGGGGCCGGGCCCGGCATCCGCGGG
CGGCAACGGGCGGCGGTAACGGCGGGCGGCGGCGGCGACGGCGGGGGCGG
CGACGGCGGCGGCGGCGGCGGGGGGCTATAGGTGGCGGACGAGGCCATTG
GGCACACGGCCGGGGACCTTGTCATGGTCGTGCAGGCCTCGCAGCACGAG
TTTTTTGAGCGCCAGGTGACCACC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig119:342496..343919+

>mRNA_H-akashiwo_Contig119.6.1 ID=mRNA_H-akashiwo_Contig119.6.1|Name=mRNA_H-akashiwo_Contig119.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=219bp|location=Sequence derived from alignment at H-akashiwo_Contig119:342496..343919+ (Heterosigma akashiwo CCMP452)
CGGGGCAAGTGCTGGAAGCAGAGCTGCAAGGCCTGCCCGCACGGCCAGAC
CGAGAAGGAGACGATCAGCCTCACCGTGGACATCCACCCGGGCATGCGCG
ACGGCGACGAGATCCGATTCGAAAACGTGGCGGACGAGGCCATTGGGCAC
ACGGCCGGGGACCTTGTCATGGTCGTGCAGGCCTCGCAGCACGAGTTTTT
TGAGCGCCAGGTGACCACC
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