mRNA_H-akashiwo_Contig118.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig118.1.1
Unique NamemRNA_H-akashiwo_Contig118.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig118.1.1 vs. uniprot
Match: A0A7S4UGY1_9DINO (Ribosomal protein L15 n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UGY1_9DINO)

HSP 1 Score: 416 bits (1070), Expect = 1.780e-146
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1 
Query:   40 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHRLGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQSVAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINWICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQESMRRYR 654
            MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHRLGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQSVAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINWICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQESMRRYR
Sbjct:    1 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHRLGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQSVAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINWICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQESMRRYR 205
[Close]
BLAST of mRNA_H-akashiwo_Contig118.1.1 vs. uniprot
Match: A0A7S2UVW3_9STRA (Ribosomal protein L15 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVW3_9STRA)

HSP 1 Score: 357 bits (915), Expect = 7.330e-123
Identity = 173/205 (84.39%), Postives = 187/205 (91.22%), Query Frame = 1 
Query:   40 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHRLGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQSVAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINWICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQESMRRYR 654
            MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQ+PK+    +PTRTDKAHRLG+KAKQG+VVYRVAVRRGGRKRPNPKG+V+GKPKHQGINQLKF RNLQSVAE+RAGKRCANLRVLNSYW+NQDATYKY+EVIMVDP HK IR DPRINW+ KAVHKHRE RGLTSAGRK RGLRK GHRA K+QG STR NW RRN  S++RYR
Sbjct:    1 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQLPKVYKCTKPTRTDKAHRLGYKAKQGYVVYRVAVRRGGRKRPNPKGIVYGKPKHQGINQLKFVRNLQSVAEQRAGKRCANLRVLNSYWVNQDATYKYYEVIMVDPQHKVIRNDPRINWLVKAVHKHRECRGLTSAGRKHRGLRKKGHRAHKLQGSSTRGNWLRRNTLSLKRYR 205
[Close]
BLAST of mRNA_H-akashiwo_Contig118.1.1 vs. uniprot
Match: A0A812N8C6_SYMMI (Ribosomal protein L15 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812N8C6_SYMMI)

HSP 1 Score: 335 bits (858), Expect = 3.500e-114
Identity = 163/205 (79.51%), Postives = 181/205 (88.29%), Query Frame = 1 
Query:   40 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHRLGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQSVAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINWICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQESMRRYR 654
            MGAYKYLEE+WRKKQSDVLRFLLRVRAWEYRQ  K+  ++RPTRTDKAH+LG+KAKQGFV+YRVAVRRGGRKRP  +G+VHGKPK+QG+NQLKF RNL+SVAEERAG+   NLRVLNSYW+NQDATYKY+EVI++DP H  IR DPRINWICK V KHRE RGLTSAGRKGRGLRKSGHRA    GGST A WKRRN +SMRRYR
Sbjct:    1 MGAYKYLEEVWRKKQSDVLRFLLRVRAWEYRQAKKVVRVNRPTRTDKAHKLGYKAKQGFVIYRVAVRRGGRKRPVGRGIVHGKPKNQGVNQLKFQRNLRSVAEERAGRVAGNLRVLNSYWVNQDATYKYYEVILIDPQHVVIRNDPRINWICKPVMKHRERRGLTSAGRKGRGLRKSGHRANNSIGGSTYAAWKRRNTQSMRRYR 205
[Close]
BLAST of mRNA_H-akashiwo_Contig118.1.1 vs. uniprot
Match: F0WIA3_9STRA (Ribosomal protein L15 n=2 Tax=Albugo TaxID=65356 RepID=F0WIA3_9STRA)

HSP 1 Score: 328 bits (842), Expect = 9.860e-112
Identity = 163/205 (79.51%), Postives = 177/205 (86.34%), Query Frame = 1 
Query:   40 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHRLGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQSVAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINWICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQESMRRYR 654
            MGAYKYLEELW++KQSDVLRFL+RVRAWEYRQ P I    RPTR DKA RLG+KAKQG+V+ R AVRRGGRKRPN KG+V+GKPKH GINQLKFARNL+SVAEERAG R  NLRVLNSYWINQDATYKYFEVIMVD +HK IR+DPRINWI    HK RE RGLTSAGR+GRGLRK GHRA KIQGGS+R NWKRRN  S+RRYR
Sbjct:    1 MGAYKYLEELWKRKQSDVLRFLIRVRAWEYRQQPVIYRTTRPTRIDKARRLGYKAKQGYVIVRAAVRRGGRKRPNSKGIVYGKPKHHGINQLKFARNLRSVAEERAGARFTNLRVLNSYWINQDATYKYFEVIMVDHSHKVIRQDPRINWIVNPTHKRREKRGLTSAGRQGRGLRKRGHRANKIQGGSSRHNWKRRNTLSLRRYR 205
[Close]
BLAST of mRNA_H-akashiwo_Contig118.1.1 vs. uniprot
Match: A0A7S2D6X5_9STRA (Ribosomal protein L15 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6X5_9STRA)

HSP 1 Score: 328 bits (841), Expect = 1.350e-111
Identity = 161/205 (78.54%), Postives = 176/205 (85.85%), Query Frame = 1 
Query:   40 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHRLGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQSVAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINWICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQESMRRYR 654
            MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQ+PKI    +PTRTDKAHRLG+KAK+G+ VYRVAVRRGGRKRPN KGMV GKPKHQGIN+LKF RNLQSVAEER G+R  NLRVLNSYW+NQDATYK+FEVI+VD  HK +R DP+INW+C  VHKHRE RGLTSAGRK RG RK GHRA    GGS+ A WKRRN  S+RRYR
Sbjct:    1 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQLPKIYRCTKPTRTDKAHRLGYKAKEGYCVYRVAVRRGGRKRPNHKGMVFGKPKHQGINELKFNRNLQSVAEERIGRRAGNLRVLNSYWVNQDATYKFFEVILVDVQHKTVRVDPKINWLCNPVHKHRECRGLTSAGRKARGFRKGGHRANNRIGGSSFAAWKRRNNLSLRRYR 205
[Close]
BLAST of mRNA_H-akashiwo_Contig118.1.1 vs. uniprot
Match: A0A7S1UIX1_9STRA (Ribosomal protein L15 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIX1_9STRA)

HSP 1 Score: 326 bits (835), Expect = 1.110e-110
Identity = 158/205 (77.07%), Postives = 178/205 (86.83%), Query Frame = 1 
Query:   40 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHRLGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQSVAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINWICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQESMRRYR 654
            MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQ+P++ +LHRPTRT+KAHRLG+KAKQG+ + RVAVRRGGRKRPN KG+V GKPKH GIN LKFARNLQSVAEERAG++ ANLRVLNSYW+NQDATYKY+EVIMVDP+H AIR DPRINWI     KHRENRGLTSAGRK RG+R+ GH+A  I GGS +A WKRRN   ++  R
Sbjct:    1 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQLPRVMSLHRPTRTEKAHRLGYKAKQGYTIVRVAVRRGGRKRPNNKGIVFGKPKHHGINHLKFARNLQSVAEERAGRKAANLRVLNSYWVNQDATYKYYEVIMVDPSHNAIRNDPRINWIVAPTMKHRENRGLTSAGRKARGMRQKGHKANNIIGGSWKAAWKRRNTLKLKLRR 205
[Close]
BLAST of mRNA_H-akashiwo_Contig118.1.1 vs. uniprot
Match: A0A835ZF84_9STRA (Ribosomal protein L15 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF84_9STRA)

HSP 1 Score: 325 bits (834), Expect = 1.570e-110
Identity = 160/205 (78.05%), Postives = 180/205 (87.80%), Query Frame = 1 
Query:   40 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHRLGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQSVAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINWICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQESMRRYR 654
            MGAYKY+EELWRKKQSDVLRFLLRVRAWEYRQ+PK+    +PTRTDKAHRLG+KAKQG+ V+RVAVRRGGRKRPN KG+V+GKPK+QGI QLKF R+L+SVAEERAG +CAN+RVLNSYW+NQDATYKY+EVI+VDP HKAIR D RINWI K V KHRE RGLTSAGR  RGLRKSGHRA  I GGS RA W++RN  S+RRYR
Sbjct:    1 MGAYKYMEELWRKKQSDVLRFLLRVRAWEYRQLPKVYKCTKPTRTDKAHRLGYKAKQGYSVFRVAVRRGGRKRPNYKGIVYGKPKNQGITQLKFVRSLRSVAEERAGAKCANMRVLNSYWVNQDATYKYYEVILVDPQHKAIRNDSRINWIAKPVMKHRECRGLTSAGRTSRGLRKSGHRANNIIGGSHRAAWRKRNTLSLRRYR 205
[Close]
BLAST of mRNA_H-akashiwo_Contig118.1.1 vs. uniprot
Match: W7U484_9STRA (Ribosomal protein L15 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U484_9STRA)

HSP 1 Score: 322 bits (825), Expect = 3.680e-109
Identity = 156/205 (76.10%), Postives = 178/205 (86.83%), Query Frame = 1 
Query:   40 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHRLGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQSVAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINWICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQESMRRYR 654
            MGAYK+LEELWRKKQ+D+LRFLLRVRAWEYRQ+PKI  ++RPTRTDKAHRLG+KAKQGFVVYRVAVRRGGRKRPNPKG+V+GKPK+QGINQLK+ RNL+S AEERAG++   LRVLNSYW+NQDATYKY+EVI+VDP HKAIR D R+NWI    HKHRE RGLTS+GR  RGLRK GHRA  I G S   +WKRRN  S++RYR
Sbjct:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205
[Close]
BLAST of mRNA_H-akashiwo_Contig118.1.1 vs. uniprot
Match: F0Y8J7_AURAN (Ribosomal protein L15 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8J7_AURAN)

HSP 1 Score: 321 bits (823), Expect = 7.420e-109
Identity = 154/205 (75.12%), Postives = 174/205 (84.88%), Query Frame = 1 
Query:   40 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHRLGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQSVAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINWICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQESMRRYR 654
            MGAYKYLEE+W++KQ DVLR+L+R+RAW+YRQ  K+    RPTR DKAH+LG+KAK+G+V+YR AVRRGGRKRPN KG+V+GKPKHQGINQLKFARNLQSVAEER GK+C NLRVLNSYW+NQDATYKY+EVI VDP+H  IR DPRINWI    HKHRE RGLTSAGRK RGLRK GHRA  I G S RA WKRRN  S+RRYR
Sbjct:    1 MGAYKYLEEMWKRKQCDVLRYLMRIRAWQYRQQTKVCRCTRPTRHDKAHKLGYKAKEGYVIYRSAVRRGGRKRPNGKGIVYGKPKHQGINQLKFARNLQSVAEERVGKKCGNLRVLNSYWVNQDATYKYYEVIAVDPSHAVIRNDPRINWIVNPTHKHRECRGLTSAGRKSRGLRKQGHRANNIIGSSRRAAWKRRNNLSLRRYR 205
[Close]
BLAST of mRNA_H-akashiwo_Contig118.1.1 vs. uniprot
Match: A0A7S1G6L6_9STRA (Ribosomal protein L15 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6L6_9STRA)

HSP 1 Score: 321 bits (822), Expect = 1.900e-108
Identity = 157/205 (76.59%), Postives = 174/205 (84.88%), Query Frame = 1 
Query:   40 MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHRLGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQSVAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINWICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQESMRRYR 654
            MGAYKYLEELW+KKQSDV+RFLLRVRAWEYRQ+ KI  +  P+R DKA RLG+KAKQG+VVYRVAVRRGGRKRPNPKG+V GKPKHQGINQLKF R+L+S AEER G+RC NLRVLNSYW+N D+TYKYFEVI+VDP HKAIR DPRINWI   VHKHRE RGLTSAGR GRGLRK GHRA+K+ G S RANWKR N   +   R
Sbjct:   18 MGAYKYLEELWKKKQSDVMRFLLRVRAWEYRQLNKITRVPHPSRPDKARRLGYKAKQGYVVYRVAVRRGGRKRPNPKGIVFGKPKHQGINQLKFRRSLRSTAEERIGRRCGNLRVLNSYWVNADSTYKYFEVILVDPQHKAIRRDPRINWIVNPVHKHRELRGLTSAGRAGRGLRKRGHRASKLIGSSRRANWKRNNTLKLHHRR 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig118.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4UGY1_9DINO1.780e-146100.00Ribosomal protein L15 n=1 Tax=Alexandrium monilatu... [more]
A0A7S2UVW3_9STRA7.330e-12384.39Ribosomal protein L15 n=1 Tax=Fibrocapsa japonica ... [more]
A0A812N8C6_SYMMI3.500e-11479.51Ribosomal protein L15 n=1 Tax=Symbiodinium microad... [more]
F0WIA3_9STRA9.860e-11279.51Ribosomal protein L15 n=2 Tax=Albugo TaxID=65356 R... [more]
A0A7S2D6X5_9STRA1.350e-11178.54Ribosomal protein L15 n=1 Tax=Florenciella parvula... [more]
A0A7S1UIX1_9STRA1.110e-11077.07Ribosomal protein L15 n=1 Tax=Phaeomonas parva Tax... [more]
A0A835ZF84_9STRA1.570e-11078.05Ribosomal protein L15 n=2 Tax=Tribonema minus TaxI... [more]
W7U484_9STRA3.680e-10976.10Ribosomal protein L15 n=2 Tax=Monodopsidaceae TaxI... [more]
F0Y8J7_AURAN7.420e-10975.12Ribosomal protein L15 n=1 Tax=Aureococcus anophage... [more]
A0A7S1G6L6_9STRA1.900e-10876.59Ribosomal protein L15 n=1 Tax=Bicosoecida sp. CB-2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig118contigH-akashiwo_Contig118:53883..55142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog653948.CCA20982
Preferred nameRPL15
PFAMsRibosomal_L15e
Model size762
Max annot lvl2759|Eukaryota
KEGG koko:K02877,ko:K15276
KEGG TC2.A.7.11.2,2.A.7.11.3
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009636,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016236,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0031672,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042493,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0045471,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061919,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097305,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1990904
Exons3
Evalue8.24e-112
EggNOG OGsCOG1632@1|root,KOG1678@2759|Eukaryota
Descriptionstructural constituent of ribosome
Cds size618
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko02000,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387107.8401818-UTR-H-akashiwo_Contig118:53882..539211681387107.8401818-UTR-H-akashiwo_Contig118:53882..53921Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig118 53883..53921 +
1681387107.875611-UTR-H-akashiwo_Contig118:55037..551421681387107.875611-UTR-H-akashiwo_Contig118:55037..55142Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig118 55038..55142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387107.8499837-CDS-H-akashiwo_Contig118:53921..542221681387107.8499837-CDS-H-akashiwo_Contig118:53921..54222Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig118 53922..54222 +
1681387107.860017-CDS-H-akashiwo_Contig118:54451..546561681387107.860017-CDS-H-akashiwo_Contig118:54451..54656Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig118 54452..54656 +
1681387107.8677053-CDS-H-akashiwo_Contig118:54925..550371681387107.8677053-CDS-H-akashiwo_Contig118:54925..55037Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig118 54926..55037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig118.1.1prot_H-akashiwo_Contig118.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig118 53922..55037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig118.1.1

>prot_H-akashiwo_Contig118.1.1 ID=prot_H-akashiwo_Contig118.1.1|Name=mRNA_H-akashiwo_Contig118.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=206bp
MGAYKYLEELWRKKQSDVLRFLLRVRAWEYRQMPKIKALHRPTRTDKAHR
LGFKAKQGFVVYRVAVRRGGRKRPNPKGMVHGKPKHQGINQLKFARNLQS
VAEERAGKRCANLRVLNSYWINQDATYKYFEVIMVDPNHKAIREDPRINW
ICKAVHKHRENRGLTSAGRKGRGLRKSGHRATKIQGGSTRANWKRRNQES
MRRYR*
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mRNA from alignment at H-akashiwo_Contig118:53883..55142+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig118.1.1 ID=mRNA_H-akashiwo_Contig118.1.1|Name=mRNA_H-akashiwo_Contig118.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1260bp|location=Sequence derived from alignment at H-akashiwo_Contig118:53883..55142+ (Heterosigma akashiwo CCMP452)
ATATTGGAAGAAGAAATTGAAAGCAACACTTTTTGAACAATGGGAGCTTA
CAAGTACCTGGAAGAGCTCTGGAGGAAGAAGCAAAGCGACGTGCTTCGCT
TTCTCCTCCGTGTCAGGGCATGGGAGTACCGCCAGATGCCCAAGATCAAG
GCCCTGCACCGTCCCACCCGCACGGACAAGGCCCACAGACTTGGCTTCAA
GGCTAAGCAGGGTTTCGTCGTCTACCGGGTTGCCGTGAGGAGAGGTGGCC
GGAAGCGCCCGAACCCCAAGGGTATGGTGCACGGAAAGCCCAAGCACCAG
GGTATCAACCAGCTCAAGTTCGCCAGAAACCTGCAGTCGGGTGAGCGCTT
TGGGATTTGTAATTTTTTGTCTGTTATATTTTTTTTGCCTTGTATATTTT
TGTCCGCATTGCAACATTATCACTAGTCGGAACATCAACTTAGCGTGGTG
GAGTACACTATGATTGATCAGTGAATGGAACGGGCGACAGTTTCAACTTC
CCAAAAATATGTGTTATTCTTCAAAGTTCTATTACCTCCTTATCGCGTAA
AATAAACAAAATACAACAGTGGCTGAGGAGCGCGCGGGCAAGAGATGTGC
CAACCTGAGGGTGCTGAACTCTTACTGGATCAACCAGGATGCCACCTACA
AATACTTCGAGGTGATCATGGTTGACCCAAACCACAAGGCCATCCGGGAG
GATCCTCGCATCAATTGGATCTGCAAGGCTGTGCACAAGCACAGAGAAAA
CCGCGGCCTTACCTCGGCTGGCAGGTTTGAATAAGATTATTATGCACCTA
TCACTATTGTTGGTCCTGCATGCTTTACTTGTACTTTGGTAATGTTGTAC
AATATATGATAATGGTGATGGTCACATGTTGTATAGTATATTATACAACA
TTTATGATCAATTCATGACTTCTTCTGAAAGTGCTGACAAGCAGAGAGAT
ATTCCTCCCTTCAAAATGCTGACTCAAAAGCTTGTGTAATAATCTGAAAA
TGTTTTGATGATCAAGTTTTTTTTTTTTTTTTTTTCACTACAGGAAGGGA
CGCGGGCTCCGCAAGAGCGGGCACAGAGCCACCAAGATCCAGGGTGGCTC
CACCAGAGCCAACTGGAAGCGCAGAAACCAGGAGTCCATGCGCAGATACC
GTTAAGCTGTGGTCATGGGAAGATGCTGGGGAACAGATTAAGGCTGTTCT
TCTTGCCTTGGTCTCTGATTTCTCTGCTTCTTCCTCATCACTGGCTTTGG
TGCTCTGCCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig118:53883..55142+

>mRNA_H-akashiwo_Contig118.1.1 ID=mRNA_H-akashiwo_Contig118.1.1|Name=mRNA_H-akashiwo_Contig118.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=618bp|location=Sequence derived from alignment at H-akashiwo_Contig118:53883..55142+ (Heterosigma akashiwo CCMP452)
ATGGGAGCTTACAAGTACCTGGAAGAGCTCTGGAGGAAGAAGCAAAGCGA
CGTGCTTCGCTTTCTCCTCCGTGTCAGGGCATGGGAGTACCGCCAGATGC
CCAAGATCAAGGCCCTGCACCGTCCCACCCGCACGGACAAGGCCCACAGA
CTTGGCTTCAAGGCTAAGCAGGGTTTCGTCGTCTACCGGGTTGCCGTGAG
GAGAGGTGGCCGGAAGCGCCCGAACCCCAAGGGTATGGTGCACGGAAAGC
CCAAGCACCAGGGTATCAACCAGCTCAAGTTCGCCAGAAACCTGCAGTCG
GTGGCTGAGGAGCGCGCGGGCAAGAGATGTGCCAACCTGAGGGTGCTGAA
CTCTTACTGGATCAACCAGGATGCCACCTACAAATACTTCGAGGTGATCA
TGGTTGACCCAAACCACAAGGCCATCCGGGAGGATCCTCGCATCAATTGG
ATCTGCAAGGCTGTGCACAAGCACAGAGAAAACCGCGGCCTTACCTCGGC
TGGCAGGAAGGGACGCGGGCTCCGCAAGAGCGGGCACAGAGCCACCAAGA
TCCAGGGTGGCTCCACCAGAGCCAACTGGAAGCGCAGAAACCAGGAGTCC
ATGCGCAGATACCGTTAA
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