mRNA_H-akashiwo_Contig118.32.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig118.32.1
Unique NamemRNA_H-akashiwo_Contig118.32.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig118.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig118contigH-akashiwo_Contig118:977259..978021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size764
Hectar predicted targeting categoryother localisation
Exons1
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387107.8076286-UTR-H-akashiwo_Contig118:977258..9775681681387107.8076286-UTR-H-akashiwo_Contig118:977258..977568Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig118 977259..977568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387107.815661-CDS-H-akashiwo_Contig118:977568..9780211681387107.815661-CDS-H-akashiwo_Contig118:977568..978021Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig118 977569..978021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig118.32.1prot_H-akashiwo_Contig118.32.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig118 977569..978021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig118.32.1

>prot_H-akashiwo_Contig118.32.1 ID=prot_H-akashiwo_Contig118.32.1|Name=mRNA_H-akashiwo_Contig118.32.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=151bp
MIASTIYERSQSHHFWLLFSGDIDSELKRSKIAETGRQRMAHIVFIPPVS
LQLAFGTACSIGNLLEIGHVQSSAHVTSFHSVKSLLHNIIDDKKAKVPIK
GINMIMLTAGERLHLVIIGVSMVIDSRKAPRSVASCPVTLPYFHPLVKTM
S
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mRNA from alignment at H-akashiwo_Contig118:977259..978021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig118.32.1 ID=mRNA_H-akashiwo_Contig118.32.1|Name=mRNA_H-akashiwo_Contig118.32.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=763bp|location=Sequence derived from alignment at H-akashiwo_Contig118:977259..978021+ (Heterosigma akashiwo CCMP452)
TGCCTCAGAAAGTGTGAATGAAGTTTGAGCCCGCCGCTGCCTCAGAAAGA
GTGAATGAAGTGTGAAGTGTGACTGCCCGTCACGCCTCAGAAAGTGTGAG
TGAAGTGTGAGTACTCCGCCGTACAGCGTAGCAGAAGCATCACAAAGCCT
GAGGTTCAACTGAGTGTTTGGTAGGAAGACGAAAAAAATAGGAATGGCCA
GATACATGCTTGGGATGTAAATCATCAACACCAGAAACTGGTAGAAGCCC
AAAGGAACAAAGCGACAAGTTCCATCAATAAACAAATGTCTGGAACCTTC
ACTAGCAATCATGATAGCCTCAACAATCTATGAGAGAAGCCAGTCCCACC
ATTTTTGGCTTCTTTTCAGTGGAGATATTGACAGTGAACTGAAAAGGTCG
AAGATCGCCGAGACAGGTCGCCAGAGGATGGCCCATATTGTCTTCATACC
ACCAGTCAGCTTGCAATTGGCGTTTGGTACGGCGTGCAGCATAGGCAACC
TGCTTGAGATTGGGCATGTTCAGAGTTCTGCCCATGTGACAAGCTTTCAC
AGTGTCAAGAGCCTGCTTCACAACATCATTGACGACAAAAAGGCGAAGGT
CCCTATCAAAGGCATCAACATGATTATGTTGACAGCAGGAGAACGTCTTC
ATCTAGTTATTATCGGAGTCAGCATGGTTATTGACAGCAGGAAAGCCCCA
AGGTCTGTGGCCAGCTGCCCAGTCACGCTCCCCTACTTTCACCCATTAGT
GAAAACCATGTCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig118:977259..978021+

>mRNA_H-akashiwo_Contig118.32.1 ID=mRNA_H-akashiwo_Contig118.32.1|Name=mRNA_H-akashiwo_Contig118.32.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=453bp|location=Sequence derived from alignment at H-akashiwo_Contig118:977259..978021+ (Heterosigma akashiwo CCMP452)
ATGATAGCCTCAACAATCTATGAGAGAAGCCAGTCCCACCATTTTTGGCT
TCTTTTCAGTGGAGATATTGACAGTGAACTGAAAAGGTCGAAGATCGCCG
AGACAGGTCGCCAGAGGATGGCCCATATTGTCTTCATACCACCAGTCAGC
TTGCAATTGGCGTTTGGTACGGCGTGCAGCATAGGCAACCTGCTTGAGAT
TGGGCATGTTCAGAGTTCTGCCCATGTGACAAGCTTTCACAGTGTCAAGA
GCCTGCTTCACAACATCATTGACGACAAAAAGGCGAAGGTCCCTATCAAA
GGCATCAACATGATTATGTTGACAGCAGGAGAACGTCTTCATCTAGTTAT
TATCGGAGTCAGCATGGTTATTGACAGCAGGAAAGCCCCAAGGTCTGTGG
CCAGCTGCCCAGTCACGCTCCCCTACTTTCACCCATTAGTGAAAACCATG
TCA
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