mRNA_H-akashiwo_Contig1173.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1173.9.1
Unique NamemRNA_H-akashiwo_Contig1173.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1173.9.1 vs. uniprot
Match: UPI0010FBB0A7 (uncharacterized protein LOC114944459 n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FBB0A7)

HSP 1 Score: 92.4 bits (228), Expect = 2.610e-21
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 ELFDKFLKKLNGIHPKIKWEAVFEKFGQLPFLDVLVVKNEDGSFTTTVYRKPTHSDRYLHWTSNNHPV-KNKLPGIRTLVYRATHYCSTASLKMAELAHLRKNFADNGY 324
            E F +FL  LN  H  I++    E+  QLPFLDVLV KN+DG+    VYRKPTH+DRYLH TS++HP  KN +  I +L+YRA       SL   EL HL +    NGY
Sbjct:   48 ETFPQFLDFLNYQHRSIQFIMEIEQNNQLPFLDVLVKKNDDGTLGHRVYRKPTHTDRYLHSTSHHHPAQKNSV--ISSLIYRALTISEPTSLN-EELEHLNQVLTKNGY 153          
BLAST of mRNA_H-akashiwo_Contig1173.9.1 vs. uniprot
Match: UPI0005F5870B (uncharacterized protein LOC105568001 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F5870B)

HSP 1 Score: 92.0 bits (227), Expect = 7.070e-21
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 ELFDKFLKKLNGIHPKIKWEAVFEKFGQLPFLDVLVVKNEDGSFTTTVYRKPTHSDRYLHWTSNNHPV-KNKLPGIRTLVYRATHYCSTASLKMAELAHLRKNFADNGY 324
            E    FL  +N  HP I++    E+  Q+PFLDVLV +NEDG+ +  VYRKPTH+DRYLH  S++HP  KN +  I +LV+RA      A+L   EL HL +    NGY
Sbjct:   12 ETLPHFLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSV--ISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 117          
BLAST of mRNA_H-akashiwo_Contig1173.9.1 vs. uniprot
Match: A0A6J1QJD7_9HYME (uncharacterized protein LOC112461499 n=1 Tax=Temnothorax curvispinosus TaxID=300111 RepID=A0A6J1QJD7_9HYME)

HSP 1 Score: 94.0 bits (232), Expect = 1.430e-20
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   16 FLKKLNGIHPKIKWEAVFEKFGQLPFLDVLVVKNEDGSFTTTVYRKPTHSDRYLHWTSNNHPV-KNKLPGIRTLVYRATHYCSTASLKMAELAHLRKNFADNGY 324
            FL  LN  HP I++    E+  Q+PFLDVLV +N+DG+ +  VYRKPTH+DRYLH TS++HP  KN +  I +LVYRA     + SL   EL HL +    NGY
Sbjct:   53 FLAFLNSQHPNIQFTMEVEQNSQIPFLDVLVRRNDDGTLSHQVYRKPTHTDRYLHATSHHHPSQKNSV--ISSLVYRALTISESTSLN-GELEHLNQALTKNGY 153          
BLAST of mRNA_H-akashiwo_Contig1173.9.1 vs. uniprot
Match: UPI0005F425C1 (uncharacterized protein LOC105566767 n=2 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F425C1)

HSP 1 Score: 93.2 bits (230), Expect = 1.830e-20
Identity = 51/109 (46.79%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    1 ELFDKFLKKLNGIHPKIKWEAVFEKFGQLPFLDVLVVKNEDGSFTTTVYRKPTHSDRYLHWTSNNHPV-KNKLPGIRTLVYRATHYCSTASLKMAELAHLRKNFADNGY 324
            E   +FL  +N  HP I++    E+  Q+PFLDVLV +NEDG+ +  VYRKPTH+DRYLH  S++HP  KN +  I +LV+RA      A+L   EL HL +    NGY
Sbjct:   48 ETLPQFLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSI--ISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 153          
BLAST of mRNA_H-akashiwo_Contig1173.9.1 vs. uniprot
Match: A0A401QI04_SCYTO (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QI04_SCYTO)

HSP 1 Score: 94.7 bits (234), Expect = 2.390e-20
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   10 DKFLKKLNGIHPKIKWEAVFEKFGQLPFLDVLVVKNEDGSFTTTVYRKPTHSDRYLHWTSNNHPVKNKLPGIRTLVYRATHYCSTASLKMAELAHLRKNFADNGYLEEFVK 342
            ++FL  LN IHP IK+    E+ GQ+PFLDVLV +N +G+ + TVYRK TH+DRYLH  S++HP K K   + TL +R+        L+  EL HL++  A NGY +  ++
Sbjct:  327 EEFLGHLNSIHPNIKFTMEIEENGQIPFLDVLVKRNAEGTLSHTVYRKTTHTDRYLHAESHHHP-KQKRGILHTLAHRSKTISDKQHLR-EELQHLQQALASNGYTKTEIQ 435          
BLAST of mRNA_H-akashiwo_Contig1173.9.1 vs. uniprot
Match: UPI0005F52B34 (uncharacterized protein LOC105562568 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F52B34)

HSP 1 Score: 90.9 bits (224), Expect = 2.730e-20
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 ELFDKFLKKLNGIHPKIKWEAVFEKFGQLPFLDVLVVKNEDGSFTTTVYRKPTHSDRYLHWTSNNHPV-KNKLPGIRTLVYRATHYCSTASLKMAELAHLRKNFADNGY 324
            E   +FL  +N  HP I++    E+  Q+PFLDVLV +NEDG+    VYRKPTH+DRYLH  S++HP  KN +  I +LV+RA      A+L   +L HL +    NGY
Sbjct:   48 ETLPQFLTFINSQHPNIQFTIEIEQNSQIPFLDVLVCRNEDGTLGHNVYRKPTHTDRYLHANSHHHPAQKNSV--INSLVHRALSISEPAALD-GKLNHLHRALTRNGY 153          
BLAST of mRNA_H-akashiwo_Contig1173.9.1 vs. uniprot
Match: UPI0005F54FC3 (uncharacterized protein LOC105562922 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F54FC3)

HSP 1 Score: 92.4 bits (228), Expect = 2.930e-20
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    1 ELFDKFLKKLNGIHPKIKWEAVFEKFGQLPFLDVLVVKNEDGSFTTTVYRKPTHSDRYLHWTSNNHPV-KNKLPGIRTLVYRATHYCSTASLKMAELAHLRKNFADNGY 324
            E   +FL  +N  HP I++    E+  Q+PFLDVL+ +NEDG+ +  VYRKPTH+DRYLH  S++HP  KN +  I +LV+RA      A+L   EL HL +    NGY
Sbjct:   35 ETLPQFLTFINSQHPNIQFTMETEQNSQIPFLDVLIRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSV--ISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 140          
BLAST of mRNA_H-akashiwo_Contig1173.9.1 vs. uniprot
Match: UPI00193D6260 (uncharacterized protein LOC105202200 n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193D6260)

HSP 1 Score: 91.3 bits (225), Expect = 1.210e-19
Identity = 51/108 (47.22%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 ELFDKFLKKLNGIHPKIKWEAVFEKFGQLPFLDVLVVKNEDGSFTTTVYRKPTHSDRYLHWTSNNHPVKNKLPGIRTLVYRATHYCSTASLKMAELAHLRKNFADNGY 324
            E F  FL  LN  HP IK+    E+  Q+PFLDVLV +N DG+    VYRKP H+D+YLH TS++HP +  L  I +LVYRA    S  +    EL HL +    NGY
Sbjct:  193 ETFSPFLAFLNAQHPNIKFTMEVEQENQIPFLDVLVRRNGDGTLDHRVYRKPIHTDQYLHATSHHHPSQKNLV-INSLVYRALTV-SVPTFLNKELQHLNQTLTRNGY 298          
BLAST of mRNA_H-akashiwo_Contig1173.9.1 vs. uniprot
Match: UPI0005F49CD5 (uncharacterized protein LOC105556100 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F49CD5)

HSP 1 Score: 92.0 bits (227), Expect = 2.240e-19
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 ELFDKFLKKLNGIHPKIKWEAVFEKFGQLPFLDVLVVKNEDGSFTTTVYRKPTHSDRYLHWTSNNHPV-KNKLPGIRTLVYRATHYCSTASLKMAELAHLRKNFADNGY 324
            E    FL  +N  HP I++    E+  Q+PFLDVLV +NEDG+ +  VYRKPTH+DRYLH  S++HP  KN +  I +LV+RA      A+L   EL HL +    NGY
Sbjct:  349 ETLPHFLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSV--ISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 454          
BLAST of mRNA_H-akashiwo_Contig1173.9.1 vs. uniprot
Match: A0A654GVG9_9CEST (Reverse transcriptase domain-containing protein n=3 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A654GVG9_9CEST)

HSP 1 Score: 91.3 bits (225), Expect = 2.490e-19
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   16 FLKKLNGIHPKIKWEAVFEKFGQLPFLDVLVVKNEDGSFTTTVYRKPTHSDRYLHWTSNNHPVKNKLPGIRTLVYRATHYCSTASLKMAELAHLRKNFADNGYLEEFVK 342
            F + LN I P I++    EK  QLPFLDVLV + EDG   TTVYRK T++ R L + SN HP+ +K   +RTL  R   +C+  + K AE   LRK FA NGY   FV+
Sbjct:  117 FTQHLNSIFPDIQFTMEEEKDCQLPFLDVLVQRKEDGGLKTTVYRKATNTSRILSFLSN-HPLSHKRSCVRTLYRRVETHCTEPADKKAEAQFLRKLFAMNGYPGNFVE 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1173.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0010FBB0A72.610e-2149.54uncharacterized protein LOC114944459 n=1 Tax=Nylan... [more]
UPI0005F5870B7.070e-2146.79uncharacterized protein LOC105568001 n=1 Tax=Volle... [more]
A0A6J1QJD7_9HYME1.430e-2050.00uncharacterized protein LOC112461499 n=1 Tax=Temno... [more]
UPI0005F425C11.830e-2046.79uncharacterized protein LOC105566767 n=2 Tax=Volle... [more]
A0A401QI04_SCYTO2.390e-2045.05Reverse transcriptase domain-containing protein (F... [more]
UPI0005F52B342.730e-2045.87uncharacterized protein LOC105562568 n=1 Tax=Volle... [more]
UPI0005F54FC32.930e-2045.87uncharacterized protein LOC105562922 n=1 Tax=Volle... [more]
UPI00193D62601.210e-1947.22uncharacterized protein LOC105202200 n=1 Tax=Solen... [more]
UPI0005F49CD52.240e-1946.79uncharacterized protein LOC105556100 n=1 Tax=Volle... [more]
A0A654GVG9_9CEST2.490e-1947.71Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1173contigH-akashiwo_Contig1173:251539..251880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28377.ENSACAP00000021908
PFAMsRVT_1
Model size342
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.12e-20
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria,48H4M@7711|Chordata
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387106.0540931-CDS-H-akashiwo_Contig1173:251538..2518801681387106.0540931-CDS-H-akashiwo_Contig1173:251538..251880Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1173 251539..251880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1173.9.1prot_H-akashiwo_Contig1173.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1173 251539..251880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1173.9.1

>prot_H-akashiwo_Contig1173.9.1 ID=prot_H-akashiwo_Contig1173.9.1|Name=mRNA_H-akashiwo_Contig1173.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp
ELFDKFLKKLNGIHPKIKWEAVFEKFGQLPFLDVLVVKNEDGSFTTTVYR
KPTHSDRYLHWTSNNHPVKNKLPGIRTLVYRATHYCSTASLKMAELAHLR
KNFADNGYLEEFVK
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mRNA from alignment at H-akashiwo_Contig1173:251539..251880-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1173.9.1 ID=mRNA_H-akashiwo_Contig1173.9.1|Name=mRNA_H-akashiwo_Contig1173.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig1173:251539..251880- (Heterosigma akashiwo CCMP452)
GAGCTTTTTGACAAGTTTTTGAAGAAGCTCAATGGCATACACCCGAAGAT CAAGTGGGAAGCAGTGTTTGAGAAGTTTGGGCAGTTGCCGTTTCTGGACG TGTTGGTGGTGAAAAATGAGGATGGCTCTTTTACTACTACGGTCTACCGG AAACCCACACACTCTGACAGGTATCTCCATTGGACTTCCAACAACCATCC TGTGAAGAACAAGCTTCCTGGTATCAGAACTTTGGTCTATCGTGCTACCC ACTACTGCTCTACGGCGAGCCTGAAGATGGCGGAGTTGGCTCATTTGAGG AAGAATTTTGCTGACAACGGGTATTTGGAGGAGTTTGTGAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1173:251539..251880-

>mRNA_H-akashiwo_Contig1173.9.1 ID=mRNA_H-akashiwo_Contig1173.9.1|Name=mRNA_H-akashiwo_Contig1173.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig1173:251539..251880- (Heterosigma akashiwo CCMP452)
GAGCTTTTTGACAAGTTTTTGAAGAAGCTCAATGGCATACACCCGAAGAT
CAAGTGGGAAGCAGTGTTTGAGAAGTTTGGGCAGTTGCCGTTTCTGGACG
TGTTGGTGGTGAAAAATGAGGATGGCTCTTTTACTACTACGGTCTACCGG
AAACCCACACACTCTGACAGGTATCTCCATTGGACTTCCAACAACCATCC
TGTGAAGAACAAGCTTCCTGGTATCAGAACTTTGGTCTATCGTGCTACCC
ACTACTGCTCTACGGCGAGCCTGAAGATGGCGGAGTTGGCTCATTTGAGG
AAGAATTTTGCTGACAACGGGTATTTGGAGGAGTTTGTGAAG
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