mRNA_H-akashiwo_Contig1173.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1173.8.1
Unique NamemRNA_H-akashiwo_Contig1173.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1173.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1173contigH-akashiwo_Contig1173:153513..154053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size376
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.9070225-CDS-H-akashiwo_Contig1173:153512..1538071681387105.9070225-CDS-H-akashiwo_Contig1173:153512..153807Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1173 153513..153807 -
1681387105.9161983-CDS-H-akashiwo_Contig1173:153972..1539801681387105.9161983-CDS-H-akashiwo_Contig1173:153972..153980Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1173 153973..153980 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.9247446-UTR-H-akashiwo_Contig1173:153980..1540531681387105.9247446-UTR-H-akashiwo_Contig1173:153980..154053Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1173 153981..154053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1173.8.1prot_H-akashiwo_Contig1173.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1173 153513..153980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1173.8.1

>prot_H-akashiwo_Contig1173.8.1 ID=prot_H-akashiwo_Contig1173.8.1|Name=mRNA_H-akashiwo_Contig1173.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=101bp
MHRVGAVVAIKEQRKEKKDKDEDIPIEQYRENLLVKFREAKTKSKEEPVV
STKSEKESIVFPTPYDRLAYECKLITTSGKFNGMIIGFILIAAVIVGIQT
*
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mRNA from alignment at H-akashiwo_Contig1173:153513..154053-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1173.8.1 ID=mRNA_H-akashiwo_Contig1173.8.1|Name=mRNA_H-akashiwo_Contig1173.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=541bp|location=Sequence derived from alignment at H-akashiwo_Contig1173:153513..154053- (Heterosigma akashiwo CCMP452)
TACTGCTGCCGAGGTACAAGAAGCCTTGAAGCTTTGCTGGGGTCTTAAAC
CCTAGCAAACATCCCGTGAAATAATGCATAGGTAATCATTTTAAAGCGTG
CCCGCTACTCTAGCATCTTCCTCAACATTTCAAAGCTTCAATGAGAAATA
AAAGCTGAGCGTGTTTTTACCACCAGACGCCCAAAATTTTTGCTCAGGGA
CTTGACAAAACCGTGCCTGATTATCTTTTTAATGTTTAATGCACAGGGTG
GGAGCTGTTGTTGCAATCAAAGAACAAAGGAAAGAAAAAAAGGACAAAGA
TGAAGATATACCCATCGAGCAGTACAGAGAAAATCTCCTGGTTAAATTCC
GAGAAGCCAAAACAAAATCAAAAGAAGAACCCGTAGTTTCCACCAAGTCT
GAAAAAGAATCAATTGTCTTCCCAACACCCTACGACCGGCTGGCTTACGA
ATGTAAACTTATCACAACAAGTGGCAAATTCAATGGCATGATTATCGGAT
TCATTTTGATTGCAGCGGTCATTGTTGGCATTCAAACGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1173:153513..154053-

>mRNA_H-akashiwo_Contig1173.8.1 ID=mRNA_H-akashiwo_Contig1173.8.1|Name=mRNA_H-akashiwo_Contig1173.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig1173:153513..154053- (Heterosigma akashiwo CCMP452)
ATGCATAGGGTGGGAGCTGTTGTTGCAATCAAAGAACAAAGGAAAGAAAA
AAAGGACAAAGATGAAGATATACCCATCGAGCAGTACAGAGAAAATCTCC
TGGTTAAATTCCGAGAAGCCAAAACAAAATCAAAAGAAGAACCCGTAGTT
TCCACCAAGTCTGAAAAAGAATCAATTGTCTTCCCAACACCCTACGACCG
GCTGGCTTACGAATGTAAACTTATCACAACAAGTGGCAAATTCAATGGCA
TGATTATCGGATTCATTTTGATTGCAGCGGTCATTGTTGGCATTCAAACG
TGA
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